BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0251.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777350.1| signal peptide protein [Herbaspirillum serop... 287 4e-76 ref|YP_004751124.1| ABC transporter periplasmic-binding protein ... 246 1e-63 ref|YP_001101337.1| ABC transporter periplasmic substrate-bindin... 244 3e-63 ref|ZP_04577265.1| ABC transporter periplasmic substrate-binding... 236 1e-60 ref|ZP_08274229.1| Protein yhbN precursor [Oxalobacteraceae bact... 233 9e-60 >ref|YP_003777350.1| signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ65442.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 287 bits (735), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 133/161 (82%), Positives = 151/161 (93%) Query: 18 AGIARAERADTEKPTRIEAEQMVYDDVKQVKTFTGNVVLTRGTLLIKAGKVVLTTDPAGY 77 +G+ARAE+ADT KPT IEA+QMVYDDV+QVKTFTGNVV+TRGTL+IKAG+VVLTTD GY Sbjct: 16 SGVARAEKADTTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLIIKAGRVVLTTDQYGY 75 Query: 78 EFAILYAAPGQLASFRQKRDGGPNLWIEGQAERIEYSEKTEISKLFTRAHMQRMDGPRVT 137 E A+LYAAPG LA+FRQKRDGGP+LWIEGQAERIEYSE+TE+SKLF RAH+QRMDG R+T Sbjct: 76 ENAVLYAAPGSLATFRQKRDGGPDLWIEGQAERIEYSEQTEVSKLFQRAHIQRMDGKRIT 135 Query: 138 DEVNGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPR 178 DEVNGEFISYDSRAEFYSVNNT +G+SKPG GRITA+IQPR Sbjct: 136 DEVNGEFISYDSRAEFYSVNNTASGQSKPGAGRITAVIQPR 176 >ref|YP_004751124.1| ABC transporter periplasmic-binding protein [Collimonas fungivorans Ter331] gb|AEK60301.1| putative transport protein (ABC superfamily, peri_bind) [Collimonas fungivorans Ter331] Length = 211 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 112/159 (70%), Positives = 137/159 (86%) Query: 20 IARAERADTEKPTRIEAEQMVYDDVKQVKTFTGNVVLTRGTLLIKAGKVVLTTDPAGYEF 79 +A AE+AD+EKPT I+++Q+ YDDVKQV TGNVVLTRGTLL+KA +VV+TTDP+GY+F Sbjct: 48 LAHAEKADSEKPTLIDSDQLTYDDVKQVNVATGNVVLTRGTLLMKADRVVVTTDPSGYQF 107 Query: 80 AILYAAPGQLASFRQKRDGGPNLWIEGQAERIEYSEKTEISKLFTRAHMQRMDGPRVTDE 139 A LYA PG+LA+F+QKRDGGP+LWI+G AERIEY KTEI+KLF++A M+R+ G + TDE Sbjct: 108 ATLYADPGKLATFKQKRDGGPDLWIDGHAERIEYDGKTEITKLFSKAQMRRLQGDKPTDE 167 Query: 140 VNGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPR 178 VNGEFISYDSR EFYSVNNT G S+PG GRI A+IQPR Sbjct: 168 VNGEFISYDSRTEFYSVNNTVNGNSQPGAGRIRAVIQPR 206 >ref|YP_001101337.1| ABC transporter periplasmic substrate-binding protein [Herminiimonas arsenicoxydans] emb|CAL63216.1| Conserved hypothetical protein, putative organic solvent tolerance protein [Herminiimonas arsenicoxydans] Length = 185 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 110/169 (65%), Positives = 139/169 (82%) Query: 15 MSVAGIARAERADTEKPTRIEAEQMVYDDVKQVKTFTGNVVLTRGTLLIKAGKVVLTTDP 74 V A AE+AD KPT +EA+QM YDDVKQ+ TF GNVVLTRG++L+KA K+V+T DP Sbjct: 14 FCVMPAAHAEKADASKPTNVEADQMQYDDVKQINTFIGNVVLTRGSILMKANKMVVTQDP 73 Query: 75 AGYEFAILYAAPGQLASFRQKRDGGPNLWIEGQAERIEYSEKTEISKLFTRAHMQRMDGP 134 AGY+F ++YAAPG LASFRQKRDGGP+ WI+GQAERIEY +K EI KLF++A M+R++ Sbjct: 74 AGYQFVVMYAAPGTLASFRQKRDGGPDQWIDGQAERIEYDDKNEIMKLFSKARMRRLENG 133 Query: 135 RVTDEVNGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPRVDSSK 183 + TDEVNGE+ISYD+RAEF++V+NT +G+SKPG GRI AIIQPR +K Sbjct: 134 KTTDEVNGEYISYDTRAEFFTVHNTASGDSKPGAGRIKAIIQPRATDTK 182 >ref|ZP_04577265.1| ABC transporter periplasmic substrate-binding protein [Oxalobacter formigenes HOxBLS] gb|EEO28227.1| ABC transporter periplasmic substrate-binding protein [Oxalobacter formigenes HOxBLS] Length = 184 Score = 236 bits (602), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 108/178 (60%), Positives = 135/178 (75%) Query: 1 MKTTSLLPLFTVLLMSVAGIARAERADTEKPTRIEAEQMVYDDVKQVKTFTGNVVLTRGT 60 MK TS L + + +A A AERAD KPT IEA+QM DDVKQ+ TFTGNVV+T+GT Sbjct: 1 MKKTSFKLLALLFCIGLASNAAAERADANKPTNIEADQMTSDDVKQITTFTGNVVVTKGT 60 Query: 61 LLIKAGKVVLTTDPAGYEFAILYAAPGQLASFRQKRDGGPNLWIEGQAERIEYSEKTEIS 120 LLIKAGK V+ DP GY+F LYAAPG+LAS RQK+D GP++WIEG E+IEY K E++ Sbjct: 61 LLIKAGKAVIVEDPEGYQFITLYAAPGKLASLRQKQDAGPDIWIEGYGEKIEYDNKKEVA 120 Query: 121 KLFTRAHMQRMDGPRVTDEVNGEFISYDSRAEFYSVNNTNTGESKPGGGRITAIIQPR 178 K FTRA ++R+ G ++TD++ GEFISYD + E+YSV NTN G SKPG GR+ A+IQPR Sbjct: 121 KFFTRARVKRLQGTKITDDITGEFISYDGKTEYYSVYNTNEGVSKPGAGRVKAVIQPR 178 >ref|ZP_08274229.1| Protein yhbN precursor [Oxalobacteraceae bacterium IMCC9480] gb|EGF32297.1| Protein yhbN precursor [Oxalobacteraceae bacterium IMCC9480] Length = 184 Score = 233 bits (594), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 115/174 (66%), Positives = 135/174 (77%), Gaps = 4/174 (2%) Query: 9 LFTVLLMSVAGIA---RAERADTEKPTRIEAEQMVYDDVKQVKTFTGNVVLTRGTLLIKA 65 F LLM A AE+AD+ KPT ++A QM YDDVKQV TFTG+VV+ RGTLL+KA Sbjct: 5 FFAFLLMFNAAFVPAVHAEKADSNKPTVVDANQMAYDDVKQVNTFTGDVVVVRGTLLMKA 64 Query: 66 GKVVLTTDPAGYEFAILYAAPGQLASFRQKRDGGPNLWIEGQAERIEYSEKTEISKLFTR 125 +VV+ DPAGY+FA LYAAPG LASFRQKRDGG NLWIEG+AERIEY KTE+ KLF++ Sbjct: 65 ARVVVVQDPAGYQFATLYAAPGSLASFRQKRDGGENLWIEGEAERIEYDGKTELVKLFSK 124 Query: 126 AHMQRMDGPRVTDEVNGEFISYDSRAEFYSVNNTNTGE-SKPGGGRITAIIQPR 178 A M+R++G TDEV GEFISYDSR EF+SVNNT G+ S+ GGGRI A IQPR Sbjct: 125 AKMRRLNGTTPTDEVEGEFISYDSRTEFFSVNNTPAGQDSEAGGGRIKATIQPR 178