BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0244.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003319755.1| binding-protein-dependent transport systems ... 273 1e-71 ref|YP_004334208.1| ABC transporter integral membrane subunit [P... 252 4e-65 ref|YP_004814678.1| ABC transporter permease [Streptomyces viola... 250 1e-64 ref|ZP_07300914.1| putative ABC transporter, permease protein [S... 249 5e-64 ref|YP_003836844.1| binding-protein-dependent transport systems ... 237 2e-60 >ref|YP_003319755.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] gb|ACZ38933.1| binding-protein-dependent transport systems inner membrane component [Sphaerobacter thermophilus DSM 20745] Length = 279 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 131/259 (50%), Positives = 189/259 (72%), Gaps = 5/259 (1%) Query: 21 SLRR-TLKARPELLLIPAVFVAVVVVWEAIIRCFEIPIYIMPAPSNIALA----LVNTSY 75 SLRR L+ RPE+LL+P +FV +V VWE +++ +PIYI+P P+ I A L + S Sbjct: 15 SLRRYMLRNRPEILLVPTIFVLIVAVWELLVKLLAVPIYILPPPTEIWRAFRDGLGSGSL 74 Query: 76 LDNALYTLGEAMLGFLLAALLGIVLGGLIAQFPLAEKTLYPYLIAIQTTPKVAVAPLFIM 135 +++ TL E +LGF + ++ G+V+G ++ +F L E+T+YPY++A QT PKVA+APL + Sbjct: 75 VEHTWVTLQEVLLGFAVGSVAGLVVGVIVTRFRLVERTVYPYVVAFQTVPKVALAPLIVT 134 Query: 136 WFGFGMTSKVIIAATIAFFPILVNVISGLRTTDPARLELMRSLRATRWQIFTMVRLPGAL 195 WFGFGMTSKV+ A IAFFP+LVNVI+GL++ D R++L+RS+ A+ WQIF MVR P AL Sbjct: 135 WFGFGMTSKVVTTALIAFFPLLVNVIAGLQSVDQDRIDLLRSVNASEWQIFRMVRFPSAL 194 Query: 196 PMIFAGLNIAIIFSILGAIVGEFLGSRKGLGNAIMQMNVNLDTAGVFATLFVLSAIGVCL 255 P IFAGL++AI+FS++GAIV EF+G+R GLG I N NL+ +G FA L VLS +G+ L Sbjct: 195 PFIFAGLDVAIVFSVIGAIVSEFVGARAGLGYLIQVNNYNLNVSGTFAVLVVLSVMGLTL 254 Query: 256 HVLMSFLQRKALFWADSSR 274 H+++ ++ R+ +FW R Sbjct: 255 HLVVQWVNRRVVFWQRDDR 273 >ref|YP_004334208.1| ABC transporter integral membrane subunit [Pseudonocardia dioxanivorans CB1190] gb|AEA26355.1| ABC-type transporter, integral membrane subunit [Pseudonocardia dioxanivorans CB1190] Length = 288 Score = 252 bits (644), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 131/259 (50%), Positives = 188/259 (72%), Gaps = 9/259 (3%) Query: 23 RRTLKARPELLLIPAVFVAVVVVWEAIIRCFEIPIYIMPAPSNIALALVNTSYLDNALY- 81 R ++ RPELLL+PAVFV +++VW+ +I F + Y++P PS+I +L+ L + L+ Sbjct: 30 RFDVRERPELLLVPAVFVVLILVWQFLIPLF-VDDYVLPVPSSIVDSLIQQ--LTDPLFW 86 Query: 82 -----TLGEAMLGFLLAALLGIVLGGLIAQFPLAEKTLYPYLIAIQTTPKVAVAPLFIMW 136 TL E+++GFL+ I+LG I+Q L EKTL PY++A QT PKVA+APLF++W Sbjct: 87 GHLEVTLRESLIGFLIGVGSAILLGTAISQVRLVEKTLMPYVVAFQTVPKVALAPLFVVW 146 Query: 137 FGFGMTSKVIIAATIAFFPILVNVISGLRTTDPARLELMRSLRATRWQIFTMVRLPGALP 196 FGFG+TSK+++AA I+FFP+L+NVI GLR D R++++ A++ QIF MVRLP A+P Sbjct: 147 FGFGLTSKIVMAAVISFFPMLINVIEGLRAADADRIQMLTVFGASKLQIFRMVRLPSAMP 206 Query: 197 MIFAGLNIAIIFSILGAIVGEFLGSRKGLGNAIMQMNVNLDTAGVFATLFVLSAIGVCLH 256 IFAGL+I I+F+ILGA+VGEF+G+++GLG ++Q N N D AG+FA L VLS +G+ H Sbjct: 207 FIFAGLDIGIVFAILGAVVGEFIGAKEGLGYLLLQTNYNFDIAGMFAVLVVLSVLGLLAH 266 Query: 257 VLMSFLQRKALFWADSSRI 275 L+ F QRK FWA+ SR+ Sbjct: 267 FLIRFAQRKIAFWAEESRV 285 >ref|YP_004814678.1| ABC transporter permease [Streptomyces violaceusniger Tu 4113] gb|AEM84398.1| ABC-type transporter, integral membrane subunit [Streptomyces violaceusniger Tu 4113] Length = 269 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 131/259 (50%), Positives = 183/259 (70%), Gaps = 6/259 (2%) Query: 22 LRRTLKARPELLLIPAVFVAVVVVWEAIIRCFEIPIYIMPAPSNIALALVNTSYLDNALY 81 LR L+ARPELLL PAVFV ++ WE + F I Y++P PS I AL T D + Sbjct: 9 LRVDLRARPELLLAPAVFVVTMLAWEFAVPAFGIDDYVLPRPSQIFDAL-RTQLADPLFW 67 Query: 82 -----TLGEAMLGFLLAALLGIVLGGLIAQFPLAEKTLYPYLIAIQTTPKVAVAPLFIMW 136 T+ E++ GFLL +VLG I+Q L E+T PY++A QT PKVA+APLF++W Sbjct: 68 GHLKVTVLESLYGFLLGVAAALVLGTAISQVRLIERTFMPYVVAFQTVPKVALAPLFVVW 127 Query: 137 FGFGMTSKVIIAATIAFFPILVNVISGLRTTDPARLELMRSLRATRWQIFTMVRLPGALP 196 FGFGMTSKV++AA I+FFP+L+NVI GLR+ D R++++ A R+Q+F MVRLP ALP Sbjct: 128 FGFGMTSKVVMAAVISFFPVLINVIEGLRSADADRIQMLTVFGAGRFQVFRMVRLPSALP 187 Query: 197 MIFAGLNIAIIFSILGAIVGEFLGSRKGLGNAIMQMNVNLDTAGVFATLFVLSAIGVCLH 256 +FAGL+I I+F+ILGA+VGEF+G+++GLG ++Q N N D AG+FA L VLS +G+ H Sbjct: 188 FLFAGLDIGIVFAILGAVVGEFIGAKEGLGYLLLQTNYNFDIAGMFAVLVVLSVLGLIAH 247 Query: 257 VLMSFLQRKALFWADSSRI 275 ++ F Q++ +FWA+ +R+ Sbjct: 248 FIIRFAQKRLVFWAEENRV 266 >ref|ZP_07300914.1| putative ABC transporter, permease protein [Streptomyces hygroscopicus ATCC 53653] gb|EFL29283.1| putative ABC transporter, permease protein [Streptomyces himastatinicus ATCC 53653] Length = 276 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 131/257 (50%), Positives = 179/257 (69%), Gaps = 6/257 (2%) Query: 24 RTLKARPELLLIPAVFVAVVVVWEAIIRCFEIPIYIMPAPSNIALALVNTSYLDNALY-- 81 R L+ RPELLL+P VFV ++ WE + F I Y++P PS I AL T D + Sbjct: 18 RDLRERPELLLVPTVFVVTMLAWEFAVPAFGIDDYVLPRPSQIFDAL-RTQLADPLFWGH 76 Query: 82 ---TLGEAMLGFLLAALLGIVLGGLIAQFPLAEKTLYPYLIAIQTTPKVAVAPLFIMWFG 138 T+ E+ GFLL +VLG I+Q L E+T PY++A QT PKVA+APLF++WFG Sbjct: 77 LKVTVLESGYGFLLGVAAALVLGTAISQVRLIERTFMPYVVAFQTVPKVALAPLFVVWFG 136 Query: 139 FGMTSKVIIAATIAFFPILVNVISGLRTTDPARLELMRSLRATRWQIFTMVRLPGALPMI 198 FGMTSKV++AA I+FFP+LVNVI GLR+ D R++++ A R Q+F MVRLP ALP I Sbjct: 137 FGMTSKVVMAAVISFFPVLVNVIEGLRSADADRIQMLMVFGAGRIQVFRMVRLPSALPFI 196 Query: 199 FAGLNIAIIFSILGAIVGEFLGSRKGLGNAIMQMNVNLDTAGVFATLFVLSAIGVCLHVL 258 FAGL+I I+FSILGA+VGEF+G+++GLG ++Q N N D AG+FA L VLS +G+ H + Sbjct: 197 FAGLDIGIVFSILGAVVGEFIGAKEGLGYLLLQTNYNFDIAGMFAVLVVLSVLGLIAHFI 256 Query: 259 MSFLQRKALFWADSSRI 275 + F Q++ +FWA+ +R+ Sbjct: 257 IRFAQKRLVFWAEENRV 273 >ref|YP_003836844.1| binding-protein-dependent transport systems inner membrane component [Micromonospora aurantiaca ATCC 27029] ref|YP_004084284.1| binding-protein-dependent transport systems inner membrane component [Micromonospora sp. L5] gb|ADL47268.1| binding-protein-dependent transport systems inner membrane component [Micromonospora aurantiaca ATCC 27029] gb|ADU10133.1| binding-protein-dependent transport systems inner membrane component [Micromonospora sp. L5] Length = 286 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 122/264 (46%), Positives = 184/264 (69%), Gaps = 5/264 (1%) Query: 17 PASFSLRR-TLKARPELLLIPAVFVAVVVVWEAIIRCFEIPIYIMPAPSNIALALV---- 71 PA + R+ L+ +P+L L+P VFV VV+ WE ++ + Y++P PS++ +L Sbjct: 20 PAKPARRKFDLREKPQLWLVPTVFVVVVLAWEYGVQLIGVDEYVLPLPSSVVESLWQQLG 79 Query: 72 NTSYLDNALYTLGEAMLGFLLAALLGIVLGGLIAQFPLAEKTLYPYLIAIQTTPKVAVAP 131 + + + T EA+LGF++ +VLG I+Q + E TL PY++A QT PKVA+AP Sbjct: 80 DDQFWGHFWVTTQEALLGFVIGVGAALVLGTFISQIKIVEATLMPYIVAFQTVPKVALAP 139 Query: 132 LFIMWFGFGMTSKVIIAATIAFFPILVNVISGLRTTDPARLELMRSLRATRWQIFTMVRL 191 LF++WFGFG+TSKV++AA I+FFP+LVNVI GLR D +++++ A++ QIF MVRL Sbjct: 140 LFVVWFGFGLTSKVVMAAVISFFPMLVNVIEGLRAADADKIQMLTVFGASKTQIFRMVRL 199 Query: 192 PGALPMIFAGLNIAIIFSILGAIVGEFLGSRKGLGNAIMQMNVNLDTAGVFATLFVLSAI 251 P ALP IFAGL+I I+F+ILGA+VGEF+G+++GLG ++Q N N D AG+FA L VLS + Sbjct: 200 PSALPFIFAGLDIGIVFAILGAVVGEFIGAKEGLGYLLLQTNYNFDIAGMFAVLVVLSVM 259 Query: 252 GVCLHVLMSFLQRKALFWADSSRI 275 G+ H ++ LQ++ FWA+ +++ Sbjct: 260 GLVAHFVIRLLQKRLAFWAEDTKV 283