BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0234.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001796783.1| acyl CoA dehydrogenase oxidoreductase protei... 322 3e-86 ref|YP_003836872.1| acyl-CoA dehydrogenase domain-containing pro... 303 2e-80 ref|NP_881749.1| putative acyl-CoA dehyrdogenase [Bordetella per... 302 4e-80 ref|NP_887745.1| acyl-CoA dehydrogenase [Bordetella bronchisepti... 302 4e-80 ref|YP_003979490.1| acyl-CoA dehydrogenase [Achromobacter xyloso... 301 6e-80 >ref|YP_001796783.1| acyl CoA dehydrogenase oxidoreductase protein [Cupriavidus taiwanensis LMG 19424] emb|CAP63546.1| putative ACYL COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 391 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 158/279 (56%), Positives = 199/279 (71%) Query: 1 LLCAGTDKQKDTYIRAMVAGRKSISFALSEREAGSDPSNMQTLATPENGGWRLRGEKRWI 60 +L AG++ QK + + ++++FALSEREAGSDPS +Q A E GWR+RGEK W+ Sbjct: 101 ILLAGSEAQKQALLGGLAGRGEAVNFALSEREAGSDPSAIQATAVREGDGWRIRGEKCWL 160 Query: 61 GGGGECAYYVVFAQTEPGAGRRGIAAFMVAADAEGVRDDAREDKMGMRGTVNSTVVLDTW 120 G GG +++VFA+T A R+ I+AF+V D EG+ D EDKMG+RGT + + LD W Sbjct: 161 GNGGHSKHFIVFARTGDVAARKAISAFVVPRDTEGLVVDFYEDKMGIRGTTTTNLRLDVW 220 Query: 121 VAADCMIATPGKALRLALEALNVGRVVVAAQSNGIARAAYDAAARRAAVRTTFGQCLLDH 180 V AD ++ G L+LAL L VGRVVVAAQ+NGIA AYDAA R A R TFG L+DH Sbjct: 221 VPADSIVGPEGDGLKLALATLTVGRVVVAAQANGIALCAYDAARRYAVTRKTFGHTLIDH 280 Query: 181 QGIGFKLADVATRLSAGRMLAYETARSFDTGQDVALIGAQAKLFCSEAAHDAVDIGVQVF 240 QG+GFKLAD A LSA RM YE AR +D G+D+ +GA AKL+ SEA+HD VD VQ+ Sbjct: 281 QGVGFKLADAAMHLSAARMFTYEAARGYDEGKDIGTLGAMAKLYASEASHDVVDDAVQIL 340 Query: 241 GGEGFVKPSLVERLYRDQRATEIYEGTSEIQRLVLARAI 279 GG G+VKP++VER YRDQR EIYEGTSEIQR+VLARA+ Sbjct: 341 GGRGYVKPNVVERCYRDQRIVEIYEGTSEIQRIVLARAV 379 >ref|YP_003836872.1| acyl-CoA dehydrogenase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gb|ADL47296.1| acyl-CoA dehydrogenase domain-containing protein [Micromonospora aurantiaca ATCC 27029] Length = 384 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 158/281 (56%), Positives = 201/281 (71%), Gaps = 1/281 (0%) Query: 1 LLCAGTDKQKDTYIRAMVAGRKSISFALSEREAGSDPSNMQTLATPENGGWRLRGEKRWI 60 L+ AGT +Q++ Y+ + G ++ISFAL+E AGSD + ++T A E GWRLRGEK +I Sbjct: 101 LVLAGTPEQRERYLGGLARG-EAISFALTEEGAGSDAARIRTTAEREGAGWRLRGEKIYI 159 Query: 61 GGGGECAYYVVFAQTEPGAGRRGIAAFMVAADAEGVRDDAREDKMGMRGTVNSTVVLDTW 120 G GG YYVVFA T+P AG RGI AF+V DA+GV D EDKMG+RGT+ S + LDTW Sbjct: 160 GNGGASRYYVVFALTDPQAGTRGITAFLVDKDADGVVIDRYEDKMGIRGTLTSNLKLDTW 219 Query: 121 VAADCMIATPGKALRLALEALNVGRVVVAAQSNGIARAAYDAAARRAAVRTTFGQCLLDH 180 V ++ + +RLA++ L+ GR+ VAAQS G+A A +D A+R AA R TFG+ ++D+ Sbjct: 220 VPDGDVLGDLNRGMRLAMQTLSAGRISVAAQSLGVALAGFDVASREAARRETFGRPIIDN 279 Query: 181 QGIGFKLADVATRLSAGRMLAYETARSFDTGQDVALIGAQAKLFCSEAAHDAVDIGVQVF 240 QGI F LADVAT ++A RM+ +E AR+ G DV ++GA AKL+ SE AH AVD VQVF Sbjct: 280 QGISFPLADVATGITAARMITFEAARTHQEGGDVGILGAMAKLYASEVAHRAVDTAVQVF 339 Query: 241 GGEGFVKPSLVERLYRDQRATEIYEGTSEIQRLVLARAIHA 281 GG+GF KP ERLYRDQR EIYEGTSEIQRLVL RAI A Sbjct: 340 GGDGFCKPCPAERLYRDQRILEIYEGTSEIQRLVLGRAIKA 380 >ref|NP_881749.1| putative acyl-CoA dehyrdogenase [Bordetella pertussis Tohama I] ref|NP_887305.1| acyl-CoA dehyrdogenase [Bordetella bronchiseptica RB50] emb|CAE43458.1| putative acyl-CoA dehyrdogenase [Bordetella pertussis Tohama I] emb|CAE31255.1| putative acyl-CoA dehyrdogenase [Bordetella bronchiseptica RB50] gb|AEE68368.1| putative acyl-CoA dehyrdogenase [Bordetella pertussis CS] Length = 387 Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 161/282 (57%), Positives = 200/282 (70%), Gaps = 1/282 (0%) Query: 1 LLCAGTDKQKDTYIRAMVAGRKSISFALSEREAGSDPSNMQTLATPENGGWRLRGEKRWI 60 +L AGTD QKD Y+R M GR + SFALSER AGSD + ++ AT E GWRLRGEK WI Sbjct: 101 ILLAGTDAQKDFYLREMTLGRAT-SFALSERIAGSDAAAIEATATREGDGWRLRGEKYWI 159 Query: 61 GGGGECAYYVVFAQTEPGAGRRGIAAFMVAADAEGVRDDAREDKMGMRGTVNSTVVLDTW 120 G GG YYVVFA+T+P AG RG++AFMV + G D DKMG+RGT S + LD Sbjct: 160 GNGGASRYYVVFAKTDPAAGGRGVSAFMVDKEQPGAEIDELSDKMGIRGTQTSNLKLDLV 219 Query: 121 VAADCMIATPGKALRLALEALNVGRVVVAAQSNGIARAAYDAAARRAAVRTTFGQCLLDH 180 V + +ALRLAL+ LNVGR++VAAQS G+A AY AA RA R FGQ + ++ Sbjct: 220 VPDSARVGELNRALRLALQTLNVGRIMVAAQSLGVALGAYREAAGRAVARRAFGQPIGEN 279 Query: 181 QGIGFKLADVATRLSAGRMLAYETARSFDTGQDVALIGAQAKLFCSEAAHDAVDIGVQVF 240 Q IGF+LAD+AT +SA RM+ YE AR++D GQDV+ +GA AKLF SE +H VD VQ++ Sbjct: 280 QAIGFRLADMATEISAARMMLYEAARAYDAGQDVSNLGAMAKLFSSEVSHRVVDNTVQIW 339 Query: 241 GGEGFVKPSLVERLYRDQRATEIYEGTSEIQRLVLARAIHAE 282 GG G+ KP++ ERLYRDQR EIYEG+SEIQRLVL+RA+ E Sbjct: 340 GGLGYCKPTVAERLYRDQRILEIYEGSSEIQRLVLSRAVRKE 381 >ref|NP_887745.1| acyl-CoA dehydrogenase [Bordetella bronchiseptica RB50] emb|CAE31697.1| probable acyl-CoA dehydrogenase [Bordetella bronchiseptica RB50] Length = 388 Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 153/279 (54%), Positives = 193/279 (69%) Query: 1 LLCAGTDKQKDTYIRAMVAGRKSISFALSEREAGSDPSNMQTLATPENGGWRLRGEKRWI 60 +L GT QK + + ++++FALSER AGSD +Q A E GWR+RGEK W+ Sbjct: 101 VLLGGTAAQKSALLGGLAREGRAVNFALSERGAGSDAGAVQATAEREGAGWRIRGEKCWL 160 Query: 61 GGGGECAYYVVFAQTEPGAGRRGIAAFMVAADAEGVRDDAREDKMGMRGTVNSTVVLDTW 120 G GG +++VFA+T P R I+AF+VA +AEGV D EDKMG+RGT + + LDTW Sbjct: 161 GNGGHSHHFIVFARTGPEGQRNNISAFVVAREAEGVAVDFYEDKMGIRGTTTTNLKLDTW 220 Query: 121 VAADCMIATPGKALRLALEALNVGRVVVAAQSNGIARAAYDAAARRAAVRTTFGQCLLDH 180 VA D ++ G L+LAL L +GRVVVAAQ+NGIA AY A A R TFG+ ++DH Sbjct: 221 VAEDALVGELGHGLKLALATLTIGRVVVAAQANGIALCAYAEACDFAVSRETFGRSIIDH 280 Query: 181 QGIGFKLADVATRLSAGRMLAYETARSFDTGQDVALIGAQAKLFCSEAAHDAVDIGVQVF 240 QGIGFKLAD T LS+ RM+ YE AR++D G+D++ +GA AKL SE +H VD +QV Sbjct: 281 QGIGFKLADAMTGLSSSRMMVYEAARAYDAGEDISTLGAMAKLLASEVSHTVVDDAMQVL 340 Query: 241 GGEGFVKPSLVERLYRDQRATEIYEGTSEIQRLVLARAI 279 GG G+VKPS ER YRDQR TEIYEGTSEIQR+VLARAI Sbjct: 341 GGRGYVKPSAAERCYRDQRITEIYEGTSEIQRVVLARAI 379 >ref|YP_003979490.1| acyl-CoA dehydrogenase [Achromobacter xylosoxidans A8] gb|ADP16775.1| acyl-CoA dehydrogenase FadE25 2 [Achromobacter xylosoxidans A8] Length = 387 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 152/280 (54%), Positives = 198/280 (70%), Gaps = 2/280 (0%) Query: 1 LLCAGTDKQKDTYIRAMVAGRKSISFALSEREAGSDPSNMQTLATPENGGWRLRGEKRWI 60 ++ G+ +QK + + +++FALSER AGSD + + T A PE GWR+RGEK W+ Sbjct: 101 IILGGSAEQKMVLLGGLARDGHAVNFALSERGAGSDAAALSTTAVPEGDGWRIRGEKCWL 160 Query: 61 GGGGECAYYVVFAQT-EPGAGRRGIAAFMVAADAEGVRDDAREDKMGMRGTVNSTVVLDT 119 G GG Y++VFA+T EPGA R I+AF+V DA GV D EDKMG+RGT + + +DT Sbjct: 161 GNGGHSRYFIVFARTGEPGA-RNNISAFVVDRDAPGVVVDHYEDKMGIRGTTTTNLKVDT 219 Query: 120 WVAADCMIATPGKALRLALEALNVGRVVVAAQSNGIARAAYDAAARRAAVRTTFGQCLLD 179 WV A+ ++ G+ L+LAL L++GRVVVAAQ+NGIA +Y A A R TFG+ ++D Sbjct: 220 WVGAESVVGALGEGLKLALATLSIGRVVVAAQANGIALCSYAEARDFAVQRQTFGRSIID 279 Query: 180 HQGIGFKLADVATRLSAGRMLAYETARSFDTGQDVALIGAQAKLFCSEAAHDAVDIGVQV 239 HQG+GFKLAD AT LS+ RM+ YE AR++D GQD+ +GA AKL SE +H VD +Q+ Sbjct: 280 HQGVGFKLADAATALSSSRMMTYEAARAYDAGQDIGTLGAMAKLLASETSHSVVDDAMQI 339 Query: 240 FGGEGFVKPSLVERLYRDQRATEIYEGTSEIQRLVLARAI 279 G G+VKPS VER YRDQR TEIYEGTSEIQR+VLARAI Sbjct: 340 LAGRGYVKPSAVERCYRDQRITEIYEGTSEIQRVVLARAI 379