BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0233.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003979489.1| TetR family transcriptional regulator [Achro... 188 6e-46 ref|YP_001630545.1| TetR family transcriptional regulator [Borde... 183 2e-44 ref|NP_887744.1| TetR family transcriptional regulator [Bordetel... 181 1e-43 ref|NP_883306.1| TetR family transcriptional regulator [Bordetel... 180 1e-43 ref|NP_890836.1| TetR family transcriptional regulator [Bordetel... 172 3e-41 >ref|YP_003979489.1| TetR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16774.1| bacterial regulatory protein, TetR family protein 13 [Achromobacter xylosoxidans A8] Length = 227 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 92/189 (48%), Positives = 124/189 (65%) Query: 25 EILDAAALAFMTKGYAATSIDDVADILSATKGKIYHHYRKKADLFFDVHKRGMEMDLAAV 84 E+LDAAA AF G+AAT+ID VAD++ TKG +Y++YR K DLFF VH+R M+++L V Sbjct: 18 ELLDAAAQAFTEMGFAATTIDSVADLIGVTKGSVYYYYRSKTDLFFAVHRRAMQLNLDRV 77 Query: 85 QEAASKSHARAIDKLRAMTLAHITVIMDHLPYQRVAVQGLEMHLAGETTAAQREVLSEIL 144 A + A +L M AH ++M HLPYQRV VQG+E+HLAG TTA QR L E++ Sbjct: 78 TPLAEDAGASPPQRLWNMAHAHTHLMMAHLPYQRVTVQGVELHLAGRTTAGQRAELEELV 137 Query: 145 VLRDQYENLFRDTIRQVMTEGHAPDQDLQIVVKAFFGALNWTTIWFRPRADQTEDEKLAV 204 RD+YE+LFR I M G + VK GALNWTT+W+RPR ++E ++ A+ Sbjct: 138 RQRDRYESLFRSVIEAGMAAGDFRRGPPALQVKPLLGALNWTTMWYRPREGESEVDREAI 197 Query: 205 ANSISTFAI 213 A I+ FA+ Sbjct: 198 ARDIADFAV 206 >ref|YP_001630545.1| TetR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP42276.1| transcriptional regulator, TetR-family [Bordetella petrii] Length = 589 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/193 (45%), Positives = 127/193 (65%) Query: 24 SEILDAAALAFMTKGYAATSIDDVADILSATKGKIYHHYRKKADLFFDVHKRGMEMDLAA 83 +EILDAAA AF Y AT++D + D L +KG IY+HYR KADL+ V++R MEM++ A Sbjct: 377 AEILDAAAAAFTQYSYDATTLDQIGDALGVSKGSIYYHYRSKADLWVAVYRRAMEMNIDA 436 Query: 84 VQEAASKSHARAIDKLRAMTLAHITVIMDHLPYQRVAVQGLEMHLAGETTAAQREVLSEI 143 + A ++ A+D+L M AH +M HL YQRVAVQGLE HL G + QR L+E+ Sbjct: 437 ITPIARQAGVHALDRLYRMAHAHSLQVMKHLSYQRVAVQGLEAHLMGRVSEEQRASLAEV 496 Query: 144 LVLRDQYENLFRDTIRQVMTEGHAPDQDLQIVVKAFFGALNWTTIWFRPRADQTEDEKLA 203 + LRD YE LF + Q + G P Q+ ++ +K FGA+NWTT+W++PR +T ++ A Sbjct: 497 ISLRDHYEELFVSVLTQAIEAGELPRQNPRLSIKPLFGAINWTTMWYQPRPGETAADRDA 556 Query: 204 VANSISTFAIRGL 216 +A+ ++TF + GL Sbjct: 557 LASRLATFVLSGL 569 >ref|NP_887744.1| TetR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE31696.1| putative TetR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 215 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 121/185 (65%) Query: 25 EILDAAALAFMTKGYAATSIDDVADILSATKGKIYHHYRKKADLFFDVHKRGMEMDLAAV 84 E+LDAAA AF G++A +ID VAD++ TKG +Y++YR K DLFF VH+R M+++L AV Sbjct: 18 ELLDAAARAFTEMGFSAATIDSVADLIGVTKGSVYYYYRSKTDLFFAVHRRAMQLNLDAV 77 Query: 85 QEAASKSHARAIDKLRAMTLAHITVIMDHLPYQRVAVQGLEMHLAGETTAAQREVLSEIL 144 + A+ +L M AH ++M +LPYQRV VQG+E+ LAG TTA QR L E++ Sbjct: 78 EPLAADLSVTPARRLWNMAHAHTHLMMAYLPYQRVTVQGIELRLAGRTTAGQRAELEELV 137 Query: 145 VLRDQYENLFRDTIRQVMTEGHAPDQDLQIVVKAFFGALNWTTIWFRPRADQTEDEKLAV 204 LRD+YE+LFR + + G + VK GALNWTT+W+RPR +TE E+ ++ Sbjct: 138 QLRDRYESLFRAVVEAGVAAGQFRAAPPALAVKPLLGALNWTTLWYRPREGETEAERESI 197 Query: 205 ANSIS 209 A I+ Sbjct: 198 ARGIA 202 >ref|NP_883306.1| TetR family transcriptional regulator [Bordetella parapertussis 12822] emb|CAE36286.1| putative TetR-family transcriptional regulator [Bordetella parapertussis] Length = 204 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 86/185 (46%), Positives = 122/185 (65%) Query: 25 EILDAAALAFMTKGYAATSIDDVADILSATKGKIYHHYRKKADLFFDVHKRGMEMDLAAV 84 E+LDAAA AF G++A +ID VAD++ TKG +Y++YR K DLFF VH+R M+++L AV Sbjct: 7 ELLDAAARAFTEMGFSAATIDSVADLIGVTKGSVYYYYRSKTDLFFAVHRRAMQLNLDAV 66 Query: 85 QEAASKSHARAIDKLRAMTLAHITVIMDHLPYQRVAVQGLEMHLAGETTAAQREVLSEIL 144 + A+ +L M AH ++M +LPYQRV VQG+E+ LAG TTA QR L E++ Sbjct: 67 EPLAADLSVTPARRLWNMAHAHTHLMMAYLPYQRVTVQGIELRLAGRTTAGQRAELEELV 126 Query: 145 VLRDQYENLFRDTIRQVMTEGHAPDQDLQIVVKAFFGALNWTTIWFRPRADQTEDEKLAV 204 LRD+YE+LFR + + G + VK GALNWTT+W+RPR +TE E+ ++ Sbjct: 127 QLRDRYESLFRAVVEAGVAAGQFRAAPPALAVKPLLGALNWTTLWYRPREGETEAERESI 186 Query: 205 ANSIS 209 A+ I+ Sbjct: 187 AHGIA 191 >ref|NP_890836.1| TetR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE34665.1| TetR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 222 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 87/192 (45%), Positives = 117/192 (60%) Query: 25 EILDAAALAFMTKGYAATSIDDVADILSATKGKIYHHYRKKADLFFDVHKRGMEMDLAAV 84 ++LDAAA AF T G+AATSID +A + ATKG +Y+HYR K DLFF VHK M M+L A Sbjct: 24 KLLDAAAKAFTTYGFAATSIDVIASQIGATKGSVYYHYRSKTDLFFAVHKCAMVMNLKAQ 83 Query: 85 QEAASKSHARAIDKLRAMTLAHITVIMDHLPYQRVAVQGLEMHLAGETTAAQREVLSEIL 144 A + KL M H ++MD L YQRV VQG+E+H + TT +RE L+E++ Sbjct: 84 VPVAFDASLDPRAKLYRMAYLHAMLMMDSLYYQRVTVQGVELHQSVSTTPMEREALAEVI 143 Query: 145 VLRDQYENLFRDTIRQVMTEGHAPDQDLQIVVKAFFGALNWTTIWFRPRADQTEDEKLAV 204 +RD YE LF +R M GH + D I K G LNW T+W+RPR ++ + V Sbjct: 144 AMRDIYEGLFSQVVRDGMASGHFAEADHSIAAKGILGILNWITVWYRPRETESPGFRQRV 203 Query: 205 ANSISTFAIRGL 216 A ++T AI+G+ Sbjct: 204 ATQLATQAIQGI 215