BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0228.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004155229.1| pirin domain-containing protein [Variovorax ...    82   3e-14
ref|YP_004359758.1| Pirin family protein [Burkholderia gladioli ...    80   7e-14
ref|YP_001628609.1| hypothetical protein Bpet0007 [Bordetella pe...    80   1e-13
ref|YP_002910863.1| Pirin family protein [Burkholderia glumae BG...    79   2e-13
ref|YP_003642977.1| Pirin domain protein [Thiomonas intermedia K...    77   1e-12

>ref|YP_004155229.1| pirin domain-containing protein [Variovorax paradoxus EPS]
 gb|ADU37118.1| Pirin domain protein [Variovorax paradoxus EPS]
          Length = 288

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 58/93 (62%)

Query: 1   VIAGDCLNRRGAMPTMSSFDVWQLQLKSRCLSEFNTVEGRTLLLAILSGSVLINGDHAAL 60
           VIAG+    RG   T ++ DVW L++    +  F+  EG TL L +L G+VL+NG   A 
Sbjct: 162 VIAGEFDGHRGPAQTFTAMDVWDLRIGQGGIGRFDAKEGHTLALVVLHGTVLVNGTTVAR 221

Query: 61  GGEVVMLDRPGAGLLLETRADTTGLLLSGEPVD 93
            G++V LDR G+G+ +E  +D T L LSGEP+D
Sbjct: 222 EGQLVHLDRAGSGVEIEANSDATVLWLSGEPID 254


>ref|YP_004359758.1| Pirin family protein [Burkholderia gladioli BSR3]
 gb|AEA59802.1| Pirin family protein [Burkholderia gladioli BSR3]
          Length = 288

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 57/93 (61%)

Query: 1   VIAGDCLNRRGAMPTMSSFDVWQLQLKSRCLSEFNTVEGRTLLLAILSGSVLINGDHAAL 60
           VIAG+    RG   T +  DVW ++L +   + F   EGRTL LA+L G+VL+NG   A 
Sbjct: 162 VIAGEFDGHRGPARTFTPIDVWDVRLAAGGQARFEIAEGRTLALAVLHGTVLVNGKEVAR 221

Query: 61  GGEVVMLDRPGAGLLLETRADTTGLLLSGEPVD 93
             +VV L R G+G+ +E   D T L+LSGEP+D
Sbjct: 222 EAQVVHLAREGSGVEIEANNDATLLVLSGEPID 254


>ref|YP_001628609.1| hypothetical protein Bpet0007 [Bordetella petrii DSM 12804]
 emb|CAP40338.1| unnamed protein product [Bordetella petrii]
          Length = 264

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/93 (45%), Positives = 56/93 (60%)

Query: 1   VIAGDCLNRRGAMPTMSSFDVWQLQLKSRCLSEFNTVEGRTLLLAILSGSVLINGDHAAL 60
           VIAG    RRG   T +  DVW ++L+ +  + F+  EGRTL LA+L G+V INGD    
Sbjct: 138 VIAGKFNGRRGPARTHTPLDVWDVRLRQQGTATFDLPEGRTLALAVLHGTVQINGDEIVR 197

Query: 61  GGEVVMLDRPGAGLLLETRADTTGLLLSGEPVD 93
            G++  L R G  + +E   D T LLLSGEP+D
Sbjct: 198 EGQLAHLAREGTRVQIEANNDVTLLLLSGEPID 230


>ref|YP_002910863.1| Pirin family protein [Burkholderia glumae BGR1]
 gb|ACR28159.1| Pirin family protein [Burkholderia glumae BGR1]
          Length = 288

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 56/93 (60%)

Query: 1   VIAGDCLNRRGAMPTMSSFDVWQLQLKSRCLSEFNTVEGRTLLLAILSGSVLINGDHAAL 60
           VIAG+     G   T +  DVW ++L S   + F   +GRTL LA+L G+VL+NG   A 
Sbjct: 162 VIAGEFDGHHGPARTFTPVDVWDVRLASGGRARFEIADGRTLALAVLRGTVLVNGSEVAR 221

Query: 61  GGEVVMLDRPGAGLLLETRADTTGLLLSGEPVD 93
             +V+ L R GAG+ +E   D T L+LSGEP+D
Sbjct: 222 EAQVIHLSRDGAGVEIEANNDATLLVLSGEPID 254


>ref|YP_003642977.1| Pirin domain protein [Thiomonas intermedia K12]
 gb|ADG30647.1| Pirin domain protein [Thiomonas intermedia K12]
          Length = 288

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 54/93 (58%)

Query: 1   VIAGDCLNRRGAMPTMSSFDVWQLQLKSRCLSEFNTVEGRTLLLAILSGSVLINGDHAAL 60
           VIAG   + RG   T +  DVW ++L +   + F+   GRTL L +L G+V +NGD    
Sbjct: 162 VIAGTYADHRGPARTFTPMDVWDVRLNAGAQTRFDIAAGRTLALVVLHGAVKVNGDAVVR 221

Query: 61  GGEVVMLDRPGAGLLLETRADTTGLLLSGEPVD 93
             +  +L R G G+L+E   D T LLLSGEP+D
Sbjct: 222 SAQFGLLSREGEGVLVEAEDDATLLLLSGEPID 254