BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0216.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_06839124.1| conserved hypothetical protein [Burkholderia ...   185   2e-45
ref|YP_555413.1| hypothetical protein Bxe_C0138 [Burkholderia xe...   176   7e-43
ref|ZP_02886254.1| conserved hypothetical protein [Burkholderia ...   171   3e-41
ref|YP_003609277.1| hypothetical protein BC1002_5883 [Burkholder...   166   2e-39
ref|ZP_03267622.1| conserved hypothetical protein [Burkholderia ...   165   2e-39

>ref|ZP_06839124.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gb|EFG73570.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 114

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/117 (79%), Positives = 102/117 (87%), Gaps = 3/117 (2%)

Query: 1   MSRDLLLLLEAGFTDPNHPGERFICPDGAPIEGLLAGDPEHAGRLDVQRLPFAKPRQKVV 60
           MSRDLLLLLE GFTDPNHPGERFICPDGAPIEGLLAGDPE   RLD++RLPF +PR  V+
Sbjct: 1   MSRDLLLLLEPGFTDPNHPGERFICPDGAPIEGLLAGDPERNARLDIRRLPFPRPRTAVI 60

Query: 61  AALDADHQSLPVLILGDEQPLPADSAHVQQLGDKRFITDTRRILDLLAERHGFFKVH 117
            ALDA+HQ LPVLILGDEQP PAD+   Q LG+KRF+TDTRRILDLLA+RHGF KVH
Sbjct: 61  EALDAEHQGLPVLILGDEQPAPADA---QTLGNKRFVTDTRRILDLLAQRHGFPKVH 114


>ref|YP_555413.1| hypothetical protein Bxe_C0138 [Burkholderia xenovorans LB400]
 gb|ABE36063.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 114

 Score =  176 bits (447), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 97/117 (82%), Gaps = 3/117 (2%)

Query: 1   MSRDLLLLLEAGFTDPNHPGERFICPDGAPIEGLLAGDPEHAGRLDVQRLPFAKPRQKVV 60
           MSRDLLLLLE GFTDPN PGERFICPDGAPIEGLLA DP    RLD+ RLPF +PR  VV
Sbjct: 1   MSRDLLLLLEPGFTDPNRPGERFICPDGAPIEGLLASDPALNARLDIHRLPFTRPRAAVV 60

Query: 61  AALDADHQSLPVLILGDEQPLPADSAHVQQLGDKRFITDTRRILDLLAERHGFFKVH 117
            ALDA+HQ LPVLI GDEQP PAD+   Q LGDKRF+TDTRRIL+LLA+RHGF KVH
Sbjct: 61  EALDAEHQGLPVLIFGDEQPAPADA---QTLGDKRFVTDTRRILELLAQRHGFPKVH 114


>ref|ZP_02886254.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gb|EDT08138.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 115

 Score =  171 bits (433), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 96/115 (83%), Gaps = 3/115 (2%)

Query: 3   RDLLLLLEAGFTDPNHPGERFICPDGAPIEGLLAGDPEHAGRLDVQRLPFAKPRQKVVAA 62
           RDLLLLLE GFTDP +PGERFICP GAPIEGLLA D     RLD++R+ FA+PR +VVAA
Sbjct: 4   RDLLLLLEPGFTDPKYPGERFICPAGAPIEGLLASDAPRNARLDIRRVAFARPRAEVVAA 63

Query: 63  LDADHQSLPVLILGDEQPLPADSAHVQQLGDKRFITDTRRILDLLAERHGFFKVH 117
           LDADHQ LPVLI GDEQP PAD+   Q LGDKRF+TDTRRILDLLAERHGF KVH
Sbjct: 64  LDADHQGLPVLIFGDEQPAPADA---QVLGDKRFVTDTRRILDLLAERHGFPKVH 115


>ref|YP_003609277.1| hypothetical protein BC1002_5883 [Burkholderia sp. CCGE1002]
 gb|ADG19766.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 114

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 94/117 (80%), Gaps = 3/117 (2%)

Query: 1   MSRDLLLLLEAGFTDPNHPGERFICPDGAPIEGLLAGDPEHAGRLDVQRLPFAKPRQKVV 60
           MSRDLL+LLE GFTDP+HPGERFICP GAPIEGLLA DP   GRLDV R+PF +PR+ V+
Sbjct: 1   MSRDLLILLEPGFTDPHHPGERFICPHGAPIEGLLASDPTRVGRLDVLRVPFERPRKAVI 60

Query: 61  AALDADHQSLPVLILGDEQPLPADSAHVQQLGDKRFITDTRRILDLLAERHGFFKVH 117
            ALD  HQ LP L+ GDEQP PAD+     LG++RF+TD RRILDLLAERHGF KVH
Sbjct: 61  EALDEAHQGLPALVFGDEQPAPADA---DSLGERRFVTDPRRILDLLAERHGFPKVH 114


>ref|ZP_03267622.1| conserved hypothetical protein [Burkholderia sp. H160]
 gb|EEA00820.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 114

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 93/117 (79%), Gaps = 3/117 (2%)

Query: 1   MSRDLLLLLEAGFTDPNHPGERFICPDGAPIEGLLAGDPEHAGRLDVQRLPFAKPRQKVV 60
           MSRD+L+LLE GFTDP HPGERFICPDGAPIEGLLA DP    RLDV R+PF +PR+ V+
Sbjct: 1   MSRDILILLEPGFTDPRHPGERFICPDGAPIEGLLASDPARVARLDVLRVPFERPRKAVI 60

Query: 61  AALDADHQSLPVLILGDEQPLPADSAHVQQLGDKRFITDTRRILDLLAERHGFFKVH 117
             LD  HQ LP L+ GDEQP PAD+   + LG++RF+TD RRILDLLAERHGF KVH
Sbjct: 61  EVLDEAHQGLPALVFGDEQPAPADA---ESLGERRFVTDPRRILDLLAERHGFPKVH 114