BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0212.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752757.1| putative fucose ABC transporter substrate-bi... 548 e-154 ref|YP_003774476.1| sugar ABC transporter periplasmic protein [H... 545 e-153 ref|ZP_02904703.1| periplasmic binding protein/LacI transcriptio... 543 e-152 ref|YP_371384.1| ABC sugar transporter, periplasmic ligand bindi... 528 e-148 ref|ZP_02888220.1| periplasmic binding protein/LacI transcriptio... 526 e-147 >ref|YP_004752757.1| putative fucose ABC transporter substrate-binding component [Collimonas fungivorans Ter331] gb|AEK61934.1| putative fucose ABC transporter, substrate-binding component [Collimonas fungivorans Ter331] Length = 327 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/313 (88%), Positives = 294/313 (93%), Gaps = 1/313 (0%) Query: 1 MIKRRALNIALGLSFAFGASGIAQAQEIYIPLVSKGFQHQFWQAVKAGANQAATDYKVKV 60 MIKRRA+NIA+GL+ A G S A A++IYIPL+SKGFQHQFWQAVK G+ QAA DY VKV Sbjct: 16 MIKRRAVNIAVGLALALGFSAAAVAEDIYIPLISKGFQHQFWQAVKTGSEQAAKDYNVKV 75 Query: 61 TFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAALPLLKKAQAAKIPVIAFDSGV 120 +FEGPETEAMVDKQIDMLSAAL KKP+AIGFAALDSKAALPLLKKAQAA IPV+AFDSGV Sbjct: 76 SFEGPETEAMVDKQIDMLSAALGKKPKAIGFAALDSKAALPLLKKAQAAHIPVVAFDSGV 135 Query: 121 DSDIPVTTTTTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFVDRMKSA 180 DSDIPVTT TTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFV+RMK A Sbjct: 136 DSDIPVTTATTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFVERMK-A 194 Query: 181 YPKIKIVSIQYGAGDQLKSTEVTKSILQAYPKLKGAFGTNEGSAIGVLNGAREMKRKVVI 240 YPKIKIVSIQYGAGDQLKSTE+TKSILQAYP LKGAFGTNEGSAIGVLNGA+E KRK+VI Sbjct: 195 YPKIKIVSIQYGAGDQLKSTEITKSILQAYPHLKGAFGTNEGSAIGVLNGAKETKRKLVI 254 Query: 241 IGFDSGKQQKDAIRDGQMAGAITQNPVGIGYKTVEAAVKALKGEKLPKIIDTGFYWYDKS 300 IG+DSGKQQKDAI+DG MAGAITQNPVGIGYKTVEAAVKALKGEKLPK+IDTGFYWYDKS Sbjct: 255 IGYDSGKQQKDAIKDGSMAGAITQNPVGIGYKTVEAAVKALKGEKLPKVIDTGFYWYDKS 314 Query: 301 NIADPKIAAVLYD 313 NI DPKI AVLYD Sbjct: 315 NINDPKIVAVLYD 327 >ref|YP_003774476.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62568.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 273/313 (87%), Positives = 296/313 (94%), Gaps = 1/313 (0%) Query: 1 MIKRRALNIALGLSFAFGASGIAQAQEIYIPLVSKGFQHQFWQAVKAGANQAATDYKVKV 60 M K + L ALGL+FA GAS AQAQE YIPL+SKGFQHQFWQAVKAGA+QA DYKVKV Sbjct: 1 MFKNKLLGAALGLAFAMGASA-AQAQEAYIPLISKGFQHQFWQAVKAGADQAGKDYKVKV 59 Query: 61 TFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAALPLLKKAQAAKIPVIAFDSGV 120 TFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAA+PLLKKAQAAKIPV+AFDSGV Sbjct: 60 TFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAAIPLLKKAQAAKIPVVAFDSGV 119 Query: 121 DSDIPVTTTTTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFVDRMKSA 180 DSDIPVTT TTDN+AAAALAADKMAEL+GKEGEVAVVAHDQTSRTG+DRRDGF++R+KSA Sbjct: 120 DSDIPVTTATTDNRAAAALAADKMAELVGKEGEVAVVAHDQTSRTGVDRRDGFLERIKSA 179 Query: 181 YPKIKIVSIQYGAGDQLKSTEVTKSILQAYPKLKGAFGTNEGSAIGVLNGAREMKRKVVI 240 YPKIK+VS+QYGAGDQLKSTEVTKSILQAYPK+KG FGTNEGSAIGV+NG +EMKRK++I Sbjct: 180 YPKIKVVSVQYGAGDQLKSTEVTKSILQAYPKIKGIFGTNEGSAIGVVNGVKEMKRKIII 239 Query: 241 IGFDSGKQQKDAIRDGQMAGAITQNPVGIGYKTVEAAVKALKGEKLPKIIDTGFYWYDKS 300 IG+DSGKQQKDAIR+G MAGAITQNPVGIGYKTVEAAVKA+KGEKLPK+IDTGFYWYDKS Sbjct: 240 IGYDSGKQQKDAIREGIMAGAITQNPVGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKS 299 Query: 301 NIADPKIAAVLYD 313 NI D KIAAVLYD Sbjct: 300 NIDDAKIAAVLYD 312 >ref|ZP_02904703.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria MEX-5] gb|EDT44201.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria MEX-5] Length = 313 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 262/313 (83%), Positives = 289/313 (92%) Query: 1 MIKRRALNIALGLSFAFGASGIAQAQEIYIPLVSKGFQHQFWQAVKAGANQAATDYKVKV 60 MI+ + LN +GL+FA G + AQAQE YIPL+SKGFQHQFWQAVKAGA QAA DYKVKV Sbjct: 1 MIRSKVLNAIVGLTFAVGVTAGAQAQETYIPLISKGFQHQFWQAVKAGAMQAAKDYKVKV 60 Query: 61 TFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAALPLLKKAQAAKIPVIAFDSGV 120 TFEGPETEAMVDKQIDMLSAA+AKKP A+GFAALDSKAALPLLKKAQA KIPVIAFDSGV Sbjct: 61 TFEGPETEAMVDKQIDMLSAAIAKKPAALGFAALDSKAALPLLKKAQAGKIPVIAFDSGV 120 Query: 121 DSDIPVTTTTTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFVDRMKSA 180 DSDIPVTT T+NK AA+LAADK+A LIG EGEVAVVAHDQTSRTGIDRRDGF++RMKSA Sbjct: 121 DSDIPVTTAATNNKTAASLAADKLAALIGDEGEVAVVAHDQTSRTGIDRRDGFLERMKSA 180 Query: 181 YPKIKIVSIQYGAGDQLKSTEVTKSILQAYPKLKGAFGTNEGSAIGVLNGAREMKRKVVI 240 +PK+++V++QYG GDQLKSTEVTKSILQAYPKLKG FGTNEGSAIGV+NG REMKRKVVI Sbjct: 181 HPKVRVVTVQYGEGDQLKSTEVTKSILQAYPKLKGLFGTNEGSAIGVVNGVREMKRKVVI 240 Query: 241 IGFDSGKQQKDAIRDGQMAGAITQNPVGIGYKTVEAAVKALKGEKLPKIIDTGFYWYDKS 300 +G+DSGKQQKDAIR G MAGAITQNP+GIGYKTVEAAVKA+KGEKLPK+IDTGFYWYDK+ Sbjct: 241 VGYDSGKQQKDAIRSGLMAGAITQNPIGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKT 300 Query: 301 NIADPKIAAVLYD 313 NI DPKI+AVLYD Sbjct: 301 NIDDPKISAVLYD 313 >ref|YP_371384.1| ABC sugar transporter, periplasmic ligand binding protein [Burkholderia sp. 383] gb|ABB10740.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Burkholderia sp. 383] Length = 313 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 264/313 (84%), Positives = 290/313 (92%) Query: 1 MIKRRALNIALGLSFAFGASGIAQAQEIYIPLVSKGFQHQFWQAVKAGANQAATDYKVKV 60 MI+ + LN +GL+FA G + AQAQE YIPL+SKGFQHQFWQAVKAGA QAA DYKVKV Sbjct: 1 MIRSKVLNAIVGLTFAVGVTAGAQAQETYIPLISKGFQHQFWQAVKAGAMQAAKDYKVKV 60 Query: 61 TFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAALPLLKKAQAAKIPVIAFDSGV 120 TFEGPETEAMVDKQIDMLSAA+AKKP A+GFAALDSKAALPLLKKAQA KIPVIAFDSGV Sbjct: 61 TFEGPETEAMVDKQIDMLSAAIAKKPAALGFAALDSKAALPLLKKAQAEKIPVIAFDSGV 120 Query: 121 DSDIPVTTTTTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFVDRMKSA 180 DSDIPVTT T+NKAAA+LAADK+A LIG EGEVAVVAHDQTSRTGIDRRDGF++RMKSA Sbjct: 121 DSDIPVTTAATNNKAAASLAADKLAALIGDEGEVAVVAHDQTSRTGIDRRDGFLERMKSA 180 Query: 181 YPKIKIVSIQYGAGDQLKSTEVTKSILQAYPKLKGAFGTNEGSAIGVLNGAREMKRKVVI 240 +PK+++V++QYG GDQLKSTEVTKSILQAYPKLKG FGTNEGSAIGV+NG REMKRKVVI Sbjct: 181 HPKVQVVTVQYGEGDQLKSTEVTKSILQAYPKLKGLFGTNEGSAIGVVNGVREMKRKVVI 240 Query: 241 IGFDSGKQQKDAIRDGQMAGAITQNPVGIGYKTVEAAVKALKGEKLPKIIDTGFYWYDKS 300 +G+DSGKQQKDAIR G MAGAITQNP+GIGYKTVEAAVKA+KGEKLPK+IDTGFYWYDK+ Sbjct: 241 VGYDSGKQQKDAIRSGLMAGAITQNPIGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKT 300 Query: 301 NIADPKIAAVLYD 313 NI DPKIAAVLYD Sbjct: 301 NIDDPKIAAVLYD 313 >ref|ZP_02888220.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria IOP40-10] gb|EDT06194.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia ambifaria IOP40-10] Length = 313 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 263/313 (84%), Positives = 290/313 (92%) Query: 1 MIKRRALNIALGLSFAFGASGIAQAQEIYIPLVSKGFQHQFWQAVKAGANQAATDYKVKV 60 MI+ + LN +GL+FA G + AQAQE YIPL+SKGFQHQFWQAVKAGA QAA DYKVKV Sbjct: 1 MIRSKVLNAIVGLTFAVGVTAGAQAQETYIPLISKGFQHQFWQAVKAGAMQAAKDYKVKV 60 Query: 61 TFEGPETEAMVDKQIDMLSAALAKKPQAIGFAALDSKAALPLLKKAQAAKIPVIAFDSGV 120 TFEGPETEAMVDKQIDMLSAA+AKKP A+GFAALDSKAALPLLKKAQA KIPVIAFDSGV Sbjct: 61 TFEGPETEAMVDKQIDMLSAAIAKKPAALGFAALDSKAALPLLKKAQAEKIPVIAFDSGV 120 Query: 121 DSDIPVTTTTTDNKAAAALAADKMAELIGKEGEVAVVAHDQTSRTGIDRRDGFVDRMKSA 180 DSDIPVTT T+NKAAA+LAADK+A LIG EGEVAVVAHDQTSRTGIDRRDGF++RMKSA Sbjct: 121 DSDIPVTTAATNNKAAASLAADKLAALIGDEGEVAVVAHDQTSRTGIDRRDGFLERMKSA 180 Query: 181 YPKIKIVSIQYGAGDQLKSTEVTKSILQAYPKLKGAFGTNEGSAIGVLNGAREMKRKVVI 240 +PK+++V++QYG GDQLKSTEVTKSILQAYPKLKG FGTNEGSAIGV+NG REMKRKVVI Sbjct: 181 HPKVRVVTVQYGEGDQLKSTEVTKSILQAYPKLKGLFGTNEGSAIGVVNGVREMKRKVVI 240 Query: 241 IGFDSGKQQKDAIRDGQMAGAITQNPVGIGYKTVEAAVKALKGEKLPKIIDTGFYWYDKS 300 +G+DSGKQQKDAIR G MAGAITQNP+GIGYKTVEAAVKA+KGEKLPK+IDTGFYWYDK+ Sbjct: 241 VGYDSGKQQKDAIRSGLMAGAITQNPIGIGYKTVEAAVKAIKGEKLPKVIDTGFYWYDKT 300 Query: 301 NIADPKIAAVLYD 313 NI DPKI+AVLYD Sbjct: 301 NIDDPKISAVLYD 313