BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0203.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751966.1| putative porin signal peptide protein [Colli... 424 e-117 ref|YP_004752017.1| putative porin signal peptide protein [Colli... 421 e-116 ref|YP_002982532.1| porin [Ralstonia pickettii 12D] >gi|24086619... 404 e-110 ref|YP_001900554.1| porin [Ralstonia pickettii 12J] >gi|18772695... 403 e-110 ref|ZP_07677829.1| outer membrane porin [Ralstonia sp. 5_7_47FAA... 402 e-110 >ref|YP_004751966.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61143.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 357 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 210/295 (71%), Positives = 236/295 (80%), Gaps = 10/295 (3%) Query: 1 MIGFKGTEDLGSGLNAFFLLESGFDATKGATNGTTLFNRRSYVGLSGSAGSLKFGKNLFI 60 M GFKGTEDLG GL AFFLLESGF+A G TNG+ LFNRRSYVGLSGSAGS+KFGKNLFI Sbjct: 73 MFGFKGTEDLGGGLGAFFLLESGFNAPTGQTNGSALFNRRSYVGLSGSAGSIKFGKNLFI 132 Query: 61 DNDIWFLDPTGQQFIGTATLVRGRNWQGADNVIEYQTPTWGGFNATFQTALGEQAGSIKN 120 ND+W+LDPTGQQFIGTA LV+GRNW GA+NVIEYQTPTW GFNAT QT+LGEQAGS +N Sbjct: 133 VNDVWYLDPTGQQFIGTANLVKGRNWPGANNVIEYQTPTWSGFNATVQTSLGEQAGSTRN 192 Query: 121 KRKDGVSLVYQNQGLELRAIYDLIRDSNGKYGTGINSDGTRNTVFDTSKELILGGTYTID 180 R DGVSLVY N GLELRAIYD+IRD NGKY SD ++ SK+LI+GGTYTI+ Sbjct: 193 GRSDGVSLVYTNAGLELRAIYDVIRDVNGKY-----SD-----IYAASKDLIVGGTYTIN 242 Query: 181 KLKLFLGYENLRAPDVAPGSPDKVNHYWLGANYQVTPALTLIGSVFRVNVNNGGGNANLF 240 LKLF YEN+ APD GSPDK+ HYW+GANY +TPALTLIG F +NN GG+ NLF Sbjct: 243 ALKLFAAYENVSAPDSVAGSPDKIQHYWIGANYVLTPALTLIGGAFHAKLNNDGGSGNLF 302 Query: 241 MAGANYSLSKRTLLYVGAGTVRNSSTANFSVEASNNNPLPGQNQNGAYAGISHSF 295 M GANY+LSKRTLLY GTVRN A+FSVE S +NPL G +QNG Y G+SHSF Sbjct: 303 MLGANYNLSKRTLLYASVGTVRNKGNADFSVEMSGDNPLAGHSQNGGYLGVSHSF 357 >ref|YP_004752017.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61194.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 343 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 206/296 (69%), Positives = 238/296 (80%), Gaps = 13/296 (4%) Query: 1 MIGFKGTEDLGSGLNAFFLLESGFDATKGATNGTTLFNRRSYVGLSGSAGSLKFGKNLFI 60 MIGFKGTEDLG GL AFFLLESGFDATKG TNG+ LFNRRSYVGL+G AGS+KFGKNLFI Sbjct: 60 MIGFKGTEDLGGGLGAFFLLESGFDATKGVTNGSALFNRRSYVGLNGGAGSIKFGKNLFI 119 Query: 61 DNDIWFLDPTGQQFIGTATLVRGRNWQGADNVIEYQTPTWGGFNATFQTALGEQAGSIKN 120 ND+W+LDPTGQQF+GTA+LV+GRNW GA+NVIEYQTPTW GFNAT QT+LGEQAGS KN Sbjct: 120 VNDVWYLDPTGQQFMGTASLVKGRNWPGANNVIEYQTPTWSGFNATAQTSLGEQAGSAKN 179 Query: 121 KRKDGVSLVYQNQGLELRAIYDLIRDSNGKYGTGINSDGTRNTVFDTSKELILGGTYTID 180 R DG+SLVY N GLELR IYD+IRD+NG+Y ++ SK+LI+GGTYTID Sbjct: 180 GRSDGISLVYTNGGLELRGIYDVIRDTNGRY----------TDIYTASKDLIVGGTYTID 229 Query: 181 KLKLFLGYENLRAPD-VAPGSPDKVNHYWLGANYQVTPALTLIGSVFRVNVNNGGGNANL 239 KLKL+ GYEN+ APD AP PDK+NHYW+GANY +TPALTLIG F +N+ G+A+L Sbjct: 230 KLKLYAGYENISAPDTAAPSDPDKLNHYWIGANYMLTPALTLIGGAFHAKINHDAGSASL 289 Query: 240 FMAGANYSLSKRTLLYVGAGTVRNSSTANFSVEASNNNPLPGQNQNGAYAGISHSF 295 FM GANY+LSKRTLLY GTVRN A+F E ++PLPG QNG YAGISH+F Sbjct: 290 FMVGANYNLSKRTLLYAAVGTVRNKGNADFGTEF--DSPLPGHAQNGGYAGISHTF 343 >ref|YP_002982532.1| porin [Ralstonia pickettii 12D] gb|ACS63860.1| porin Gram-negative type [Ralstonia pickettii 12D] Length = 358 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/296 (68%), Positives = 229/296 (77%), Gaps = 11/296 (3%) Query: 1 MIGFKGTEDLGSGLNAFFLLESGFDATKGATNGTTLFNRRSYVGLSGSA-GSLKFGKNLF 59 M GF G EDLG GL A F LESGF A +G TNG LFNRRSYVGLS G+L GKNLF Sbjct: 73 MFGFMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLF 132 Query: 60 IDNDIWFLDPTGQQFIGTATLVRGRNWQGADNVIEYQTPTWGGFNATFQTALGEQAGSIK 119 I ND+WFLDPTGQQFIG+ATLVRGRNW GA+N++EYQ+PTWGGF QT LGEQ GS Sbjct: 133 ISNDVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFT 192 Query: 120 NKRKDGVSLVYQNQGLELRAIYDLIRDSNGKYGTGINSDGTRNTVFDTSKELILGGTYTI 179 N R+DGVS VY LE+RAIYD+IRD NGK+ SD +F+ SKE GGTYTI Sbjct: 193 NSRRDGVSAVYSAGPLEVRAIYDVIRDGNGKF-----SD-----IFNFSKEATFGGTYTI 242 Query: 180 DKLKLFLGYENLRAPDVAPGSPDKVNHYWLGANYQVTPALTLIGSVFRVNVNNGGGNANL 239 K KLF YENL APD A G+P K NHYWLG NY++TPALTLIG+ +RVNVN+GGGNANL Sbjct: 243 GKAKLFAVYENLSAPDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNANL 302 Query: 240 FMAGANYSLSKRTLLYVGAGTVRNSSTANFSVEASNNNPLPGQNQNGAYAGISHSF 295 FMAGANY+LSKRT+LY GTV+NS+TANFSVEA+NNNP PG+NQ GAY GI HSF Sbjct: 303 FMAGANYNLSKRTMLYASVGTVQNSATANFSVEATNNNPAPGKNQLGAYTGIVHSF 358 >ref|YP_001900554.1| porin [Ralstonia pickettii 12J] gb|ACD28122.1| porin Gram-negative type [Ralstonia pickettii 12J] Length = 354 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/296 (68%), Positives = 230/296 (77%), Gaps = 11/296 (3%) Query: 1 MIGFKGTEDLGSGLNAFFLLESGFDATKGATNGTTLFNRRSYVGLSGSA-GSLKFGKNLF 59 M GF G EDLG GL A F LESGF A +G TNG LFNRRSYVGLS G+L GKNLF Sbjct: 69 MFGFMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLF 128 Query: 60 IDNDIWFLDPTGQQFIGTATLVRGRNWQGADNVIEYQTPTWGGFNATFQTALGEQAGSIK 119 I ND+WFLDPTGQQFIG+ATLVRGRNW GA+N++EYQ+PTWGGF QT LGEQ GS Sbjct: 129 ISNDVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFT 188 Query: 120 NKRKDGVSLVYQNQGLELRAIYDLIRDSNGKYGTGINSDGTRNTVFDTSKELILGGTYTI 179 N R+DGVS VY LE+RAIYD+IRD NGK+ SD +F+ SKE +GGTYTI Sbjct: 189 NSRRDGVSAVYSAGPLEVRAIYDVIRDGNGKF-----SD-----IFNFSKEATVGGTYTI 238 Query: 180 DKLKLFLGYENLRAPDVAPGSPDKVNHYWLGANYQVTPALTLIGSVFRVNVNNGGGNANL 239 K KLF YENL APD A G+P K NHYWLG NY++TPALTLIG+ +RVNVN+GGGNANL Sbjct: 239 GKAKLFAVYENLSAPDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNANL 298 Query: 240 FMAGANYSLSKRTLLYVGAGTVRNSSTANFSVEASNNNPLPGQNQNGAYAGISHSF 295 FMAGANY+LSKRT+LY GTV+NS+TANFSVEA+NNNP PG+NQ GAY GI HSF Sbjct: 299 FMAGANYNLSKRTMLYASVGTVQNSATANFSVEATNNNPAPGKNQLGAYTGIVHSF 354 >ref|ZP_07677829.1| outer membrane porin [Ralstonia sp. 5_7_47FAA] gb|EFP63896.1| outer membrane porin [Ralstonia sp. 5_7_47FAA] Length = 349 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 203/296 (68%), Positives = 228/296 (77%), Gaps = 11/296 (3%) Query: 1 MIGFKGTEDLGSGLNAFFLLESGFDATKGATNGTTLFNRRSYVGLSGSA-GSLKFGKNLF 59 M GF G EDLG GL A F LESGF A +G TNG LFNRRSYVGLS G+L GKNLF Sbjct: 64 MFGFMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLF 123 Query: 60 IDNDIWFLDPTGQQFIGTATLVRGRNWQGADNVIEYQTPTWGGFNATFQTALGEQAGSIK 119 I ND+WFLDPTGQQFIG+ATLVRGRNW GA+N++EYQ+PTWGGF QT LGEQ GS Sbjct: 124 ISNDVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFT 183 Query: 120 NKRKDGVSLVYQNQGLELRAIYDLIRDSNGKYGTGINSDGTRNTVFDTSKELILGGTYTI 179 N R+DGVS VY LE+RAIYD+IRD NGK+ SD +F+ SKE GGTYTI Sbjct: 184 NSRRDGVSAVYSAGPLEVRAIYDVIRDGNGKF-----SD-----IFNFSKEATFGGTYTI 233 Query: 180 DKLKLFLGYENLRAPDVAPGSPDKVNHYWLGANYQVTPALTLIGSVFRVNVNNGGGNANL 239 K KLF YENL APD A G+P K NHYWLG NY+VTPALTLIG+ +RVNVN+GGGNANL Sbjct: 234 GKAKLFAVYENLSAPDAAAGAPTKANHYWLGINYEVTPALTLIGAAYRVNVNHGGGNANL 293 Query: 240 FMAGANYSLSKRTLLYVGAGTVRNSSTANFSVEASNNNPLPGQNQNGAYAGISHSF 295 FMAGANY+LSKR +LY GTV+NS+TANFSVEA+NNNP PG+NQ GAY GI HSF Sbjct: 294 FMAGANYNLSKRMMLYASVGTVQNSATANFSVEATNNNPAPGKNQLGAYTGIVHSF 349