BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0202.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774470.1| transcription regulator protein [Herbaspiril... 313 9e-84 gb|EGP48463.1| IclR family transcriptional regulator [Achromobac... 221 4e-56 gb|EFV84592.1| IclR family Transcriptional regulator [Achromobac... 221 5e-56 ref|YP_004234152.1| IclR family transcriptional regulator [Acido... 202 3e-50 ref|ZP_01765900.1| transcriptional regulator, IclR family [Burkh... 199 2e-49 >ref|YP_003774470.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62562.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 313 bits (802), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 155/189 (82%), Positives = 169/189 (89%), Gaps = 2/189 (1%) Query: 1 MPRTKKIVPDADLEAVAEVSAIDSAADAGKVRYAAPALDKGLDILELLSKSEQMLTLNQI 60 MPRT+KI PD A + +A + + +GK RYAAPALDKGLDILELLS+SEQMLTLNQI Sbjct: 1 MPRTRKINPDD--AATVQTAAAEDDSSSGKTRYAAPALDKGLDILELLSRSEQMLTLNQI 58 Query: 61 SRQLGRSVNEIFRMVVTLEQRGYLIADNDQYRLSLKLFELAHNNQPIRSLVSTALPHMRE 120 SRQLGRSVNEIFRMVVTLEQRGYLIADND YRLSLKLFELAH++QPIRSLVSTALPHMRE Sbjct: 59 SRQLGRSVNEIFRMVVTLEQRGYLIADNDHYRLSLKLFELAHHHQPIRSLVSTALPHMRE 118 Query: 121 LANRTMQSTHLTVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLSFRDEAE 180 LA+R +QSTHLTVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLL+FRDEAE Sbjct: 119 LASRAVQSTHLTVYEAGRVIVVAQVDSPERWAFGLKVGALVSLTDTASGHVLLAFRDEAE 178 Query: 181 RGXIRPARL 189 R + A + Sbjct: 179 RAAMLAAHV 187 >gb|EGP48463.1| IclR family transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 282 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 104/160 (65%), Positives = 133/160 (83%), Gaps = 1/160 (0%) Query: 23 DSAADAGKVRYAAPALDKGLDILELLSKSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRG 82 D+A G RYAAPAL+KGLDILE L+ S TL ++++++GRSV+EIFRM VTL++RG Sbjct: 17 DAADSPGAQRYAAPALEKGLDILEALAASPAGYTLAELAQKIGRSVSEIFRMAVTLQRRG 76 Query: 83 YL-IADNDQYRLSLKLFELAHNNQPIRSLVSTALPHMRELANRTMQSTHLTVYEAGRVIV 141 ++ + DND+Y L+LK+FELAH QP++SLVS ALP +RELANR QS HL VY+AGRV+V Sbjct: 77 FVQVDDNDRYTLTLKMFELAHRQQPLKSLVSVALPLLRELANRARQSCHLAVYQAGRVVV 136 Query: 142 VAQVDSPERWAFGLKVGALVSLTDTASGHVLLSFRDEAER 181 +AQVDSPERW+FGLKVG ++ LTDT+SGHVLL+FRDE ER Sbjct: 137 IAQVDSPERWSFGLKVGVMMGLTDTSSGHVLLAFRDEVER 176 >gb|EFV84592.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 282 Score = 221 bits (563), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 106/159 (66%), Positives = 134/159 (84%), Gaps = 2/159 (1%) Query: 25 AADA-GKVRYAAPALDKGLDILELLSKSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGY 83 AADA G RYAAPAL+KGLDILE L+ S TL ++++++GRSV+EIFRM VTL++RG+ Sbjct: 18 AADAPGAQRYAAPALEKGLDILEALAASPAGYTLAELAQKIGRSVSEIFRMAVTLQRRGF 77 Query: 84 L-IADNDQYRLSLKLFELAHNNQPIRSLVSTALPHMRELANRTMQSTHLTVYEAGRVIVV 142 + + DND+Y L+LK+FELAH QP++SLVS ALP +RELANR QS HL VY+AGRV+V+ Sbjct: 78 VQVDDNDRYTLTLKMFELAHRQQPLKSLVSVALPLLRELANRARQSCHLAVYQAGRVVVI 137 Query: 143 AQVDSPERWAFGLKVGALVSLTDTASGHVLLSFRDEAER 181 AQVDSPERW+FGLKVG ++ LTDT+SGHVLL+FRDE ER Sbjct: 138 AQVDSPERWSFGLKVGVMMGLTDTSSGHVLLAFRDEVER 176 >ref|YP_004234152.1| IclR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX45585.1| transcriptional regulator, IclR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 273 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/158 (60%), Positives = 127/158 (80%), Gaps = 1/158 (0%) Query: 33 YAAPALDKGLDILELLSKSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGY-LIADNDQY 91 YAAPAL+KGL ILELLS LTLN+++RQLGRSV+EIFR+ VTL++ GY ++ DN++Y Sbjct: 23 YAAPALEKGLAILELLSSVRDGLTLNEMARQLGRSVSEIFRIAVTLQRCGYVMVDDNNRY 82 Query: 92 RLSLKLFELAHNNQPIRSLVSTALPHMRELANRTMQSTHLTVYEAGRVIVVAQVDSPERW 151 LS+K+FEL+H +RSLV+ A P ++ELA+R QS HL +Y+ GRV+V+AQVDSPERW Sbjct: 83 TLSIKMFELSHRQHALRSLVTVAQPLLQELAHRARQSCHLAMYQGGRVVVIAQVDSPERW 142 Query: 152 AFGLKVGALVSLTDTASGHVLLSFRDEAERGXIRPARL 189 +FGLK+G ++ LTDT+SGHVLL+FRDE ER + A + Sbjct: 143 SFGLKIGVMLGLTDTSSGHVLLAFRDEVERARMLAAHI 180 >ref|ZP_01765900.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] ref|ZP_02487611.1| Transcriptional regulator, IclR family protein [Burkholderia pseudomallei 7894] ref|ZP_02493151.1| Transcriptional regulator, IclR family protein [Burkholderia pseudomallei NCTC 13177] ref|ZP_02511773.1| Transcriptional regulator, IclR family protein [Burkholderia pseudomallei BCC215] ref|ZP_03450182.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] ref|ZP_04522822.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] ref|ZP_04889738.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gb|EBA49687.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 305] gb|EDU10722.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 1655] gb|EEC37994.1| transcriptional regulator, IclR family [Burkholderia pseudomallei 576] gb|EEP51736.1| transcriptional regulator, IclR family [Burkholderia pseudomallei MSHR346] Length = 268 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 93/150 (62%), Positives = 123/150 (82%) Query: 32 RYAAPALDKGLDILELLSKSEQMLTLNQISRQLGRSVNEIFRMVVTLEQRGYLIADNDQY 91 RY+APAL+KGLDI+ELL+ + L+L +++R LGR+ EIFRMVVTL+ RGYL+A ND+Y Sbjct: 5 RYSAPALEKGLDIIELLANHPEGLSLVELARALGRTTAEIFRMVVTLQNRGYLVAINDRY 64 Query: 92 RLSLKLFELAHNNQPIRSLVSTALPHMRELANRTMQSTHLTVYEAGRVIVVAQVDSPERW 151 LSL LF+L+H +QP+RSLVSTALP M +LAN QS HL+VY+AGRV+++A V+SPERW Sbjct: 65 ALSLLLFQLSHRHQPVRSLVSTALPLMTQLANDVRQSFHLSVYQAGRVLIIAGVESPERW 124 Query: 152 AFGLKVGALVSLTDTASGHVLLSFRDEAER 181 F LKVG L+ +TDTASG VL++F+ +ER Sbjct: 125 GFSLKVGTLIGMTDTASGQVLMAFQQPSER 154