BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0201.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774470.1| transcription regulator protein [Herbaspiril...   171   2e-41
ref|XP_002536436.1| carboxymethylenebutenolidase, putative [Rici...   109   2e-22
ref|YP_004234152.1| IclR family transcriptional regulator [Acido...   100   1e-19
gb|EGP48463.1| IclR family transcriptional regulator [Achromobac...    99   3e-19
gb|EFV84592.1| IclR family Transcriptional regulator [Achromobac...    99   3e-19

>ref|YP_003774470.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62562.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 94/103 (91%)

Query: 45  APGMPMHVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLA 104
           A  +  HVRMDGEQEI+ AQL+RQI +T++RG+SRMESRQIRGVVNLSYPV+GAN+RMLA
Sbjct: 180 AAMLAAHVRMDGEQEIETAQLMRQIEDTRKRGHSRMESRQIRGVVNLSYPVMGANNRMLA 239

Query: 105 ALNVPYIERIDKKVNPSLDEVQIIVHEISARLSKLMGSSSFGT 147
           ALNVPYIERIDKKVNPSLDEVQ IV EISARLS+LMG SSFG+
Sbjct: 240 ALNVPYIERIDKKVNPSLDEVQGIVQEISARLSRLMGDSSFGS 282


>ref|XP_002536436.1| carboxymethylenebutenolidase, putative [Ricinus communis]
 gb|EEF25946.1| carboxymethylenebutenolidase, putative [Ricinus communis]
          Length = 318

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 52/55 (94%)

Query: 1   MLILMGENDDWTPPEACESLEKKMQDSDTPITLRLYPDTYHDFDAPGMPMHVRMD 55
           +L+LMGENDDWTPP+ACE++EKKM+ SDT I LRLYPDTYHDFDAPG+P+HVRMD
Sbjct: 224 LLVLMGENDDWTPPQACEAMEKKMEGSDTEIALRLYPDTYHDFDAPGLPVHVRMD 278


>ref|YP_004234152.1| IclR family transcriptional regulator [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gb|ADX45585.1| transcriptional regulator, IclR family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 273

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 68/97 (70%)

Query: 48  MPMHVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLAALN 107
           +  H+++DGE  +D  +L   + + +E G++ M SRQIR V N ++P+LG   +++AALN
Sbjct: 176 LAAHIKVDGELTMDPGELFEILRQVREHGHAVMPSRQIRSVTNAAFPILGVGGQVIAALN 235

Query: 108 VPYIERIDKKVNPSLDEVQIIVHEISARLSKLMGSSS 144
           VPYIERID + NP+LDEV+ IV  I+AR+S  MG  S
Sbjct: 236 VPYIERIDAQANPTLDEVKGIVSSIAARISTSMGYQS 272


>gb|EGP48463.1| IclR family transcriptional regulator [Achromobacter xylosoxidans
           AXX-A]
          Length = 282

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 71/98 (72%)

Query: 48  MPMHVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLAALN 107
           +  H++++GE E D  +L   +A+ ++ G + M SRQIRG+ N++YPV+G  + ++AA+N
Sbjct: 180 LAAHIKVEGELESDPGELFPILADVRKNGCACMASRQIRGITNVAYPVMGVGNHVIAAIN 239

Query: 108 VPYIERIDKKVNPSLDEVQIIVHEISARLSKLMGSSSF 145
           VP+IERID+K +PS+ +VQ IV  ++ RLS LMG S +
Sbjct: 240 VPHIERIDRKESPSIAQVQEIVGNVAKRLSTLMGYSGY 277


>gb|EFV84592.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 282

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 72/98 (73%)

Query: 48  MPMHVRMDGEQEIDHAQLLRQIAETQERGYSRMESRQIRGVVNLSYPVLGANDRMLAALN 107
           +  H++++GE E D  +L   +A+ ++ G + M SRQIRG+ N++YPV+G  ++++AA+N
Sbjct: 180 LAAHIKVEGELESDPGELFPILADVRKNGCACMASRQIRGITNVAYPVMGEGNQVIAAIN 239

Query: 108 VPYIERIDKKVNPSLDEVQIIVHEISARLSKLMGSSSF 145
           VP+IERID+K +PS+ +VQ IV  ++ RLS LMG S +
Sbjct: 240 VPHIERIDRKESPSIAQVQEIVANVAQRLSTLMGYSGY 277