BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0198.p         (175 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004686607.1| cation/multidrug efflux system, mebrane-fusi...   127   6e-28
ref|YP_727319.1| cation/multidrug efflux system, mebrane-fusion ...   126   1e-27
ref|YP_294977.1| secretion protein HlyD [Ralstonia eutropha JMP1...   124   5e-27
ref|YP_002006351.1| secretion protein, hlyd family [Cupriavidus ...   119   3e-25
ref|YP_001796244.1| secretion protein, nolF homolog [Cupriavidus...   113   1e-23

>ref|YP_004686607.1| cation/multidrug efflux system, mebrane-fusion component AcrA
           [Cupriavidus necator N-1]
 gb|AEI78126.1| cation/multidrug efflux system, mebrane-fusion component AcrA
           [Cupriavidus necator N-1]
          Length = 370

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 94/135 (69%), Gaps = 2/135 (1%)

Query: 1   LIAFMALRKRPAA--PVAMVEKPVQVLEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAV 58
           L A +A+RK  +A  P A  +  V V+EFL  D+V    + LR  LPLSG LRALNQ +V
Sbjct: 17  LTATVAVRKAGSARQPQAPAQAAVNVVEFLQTDLVSVARQDLRVSLPLSGGLRALNQASV 76

Query: 59  KAKVGGEVREVLVRAGEAVALGQVLIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDN 118
           KAKV GEV+ VLVR GE V  GQV++R+D +EY+AKV QARG ++A+RGQ + + +T + 
Sbjct: 77  KAKVSGEVKAVLVREGEPVRTGQVIVRIDPTEYEAKVAQARGQMLATRGQFENSRQTWER 136

Query: 119 NLALLDKGFISRNAF 133
           N  L+ KGFISR AF
Sbjct: 137 NRELVGKGFISRTAF 151


>ref|YP_727319.1| cation/multidrug efflux system, mebrane-fusion component [Ralstonia
           eutropha H16]
 emb|CAJ93951.1| Cation/multidrug efflux system, mebrane-fusion component [Ralstonia
           eutropha H16]
          Length = 370

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 95/135 (70%), Gaps = 2/135 (1%)

Query: 1   LIAFMALRKRPAA--PVAMVEKPVQVLEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAV 58
           L A +A+RK  +A  P A  +  V V+EFL  D+V    + LR  LPLSG+LRALNQ +V
Sbjct: 17  LTATVAVRKAVSARQPQAPAQAAVNVVEFLQTDLVSVARQDLRVSLPLSGSLRALNQASV 76

Query: 59  KAKVGGEVREVLVRAGEAVALGQVLIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDN 118
           KAKV GEV+ VLVR GE V  GQV++R+D +EY+A+V QARG ++A+RGQ + + +T + 
Sbjct: 77  KAKVSGEVKAVLVREGEPVRAGQVIVRIDPTEYEARVAQARGQMLATRGQFENSRQTWER 136

Query: 119 NLALLDKGFISRNAF 133
           N  L+ KGFISR AF
Sbjct: 137 NRELVGKGFISRTAF 151


>ref|YP_294977.1| secretion protein HlyD [Ralstonia eutropha JMP134]
 gb|AAZ60133.1| Secretion protein HlyD [Ralstonia eutropha JMP134]
          Length = 370

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 94/134 (70%), Gaps = 1/134 (0%)

Query: 1   LIAFMALRKRPAAPVAMVEKPV-QVLEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAVK 59
           L A  A+RK  +A  A  +     V+EFL  D+V A  + LR  LPLSG+LRALNQ +VK
Sbjct: 18  LSATAAVRKVSSARQAPTQTAAPSVVEFLQSDLVQAGAQDLRVALPLSGSLRALNQASVK 77

Query: 60  AKVGGEVREVLVRAGEAVALGQVLIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDNN 119
           AKV GEV +VLVR GEAV  GQV++R+D +EY+AKV QARG ++A+RGQ + + +T + N
Sbjct: 78  AKVSGEVLQVLVREGEAVRAGQVIVRIDPTEYEAKVAQARGQMLAARGQYENSRQTWERN 137

Query: 120 LALLDKGFISRNAF 133
             L+ KGFIS+ AF
Sbjct: 138 RELVGKGFISKTAF 151


>ref|YP_002006351.1| secretion protein, hlyd family [Cupriavidus taiwanensis LMG 19424]
 emb|CAQ70288.1| Putative secretion protein, HlyD family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 369

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/111 (54%), Positives = 83/111 (74%)

Query: 23  QVLEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAVKAKVGGEVREVLVRAGEAVALGQV 82
            V+EFL  D+V    + L+  LPLSG+LRALNQ +VKAKV GEV++VLVR GE V  GQV
Sbjct: 40  NVVEFLQTDLVRVARQDLQLALPLSGSLRALNQASVKAKVSGEVKQVLVREGEPVRAGQV 99

Query: 83  LIRMDTSEYQAKVEQARGSLVASRGQLDIATKTRDNNLALLDKGFISRNAF 133
           ++R+D +EY+A+  QARG ++A+RGQ + + +T + N  L+DKGFIS+ AF
Sbjct: 100 IVRIDPTEYEARAAQARGQMLAARGQFENSRQTWERNRDLVDKGFISQTAF 150


>ref|YP_001796244.1| secretion protein, nolF homolog [Cupriavidus taiwanensis]
 emb|CAP64055.1| secretion protein, nolF homolog [Cupriavidus taiwanensis LMG 19424]
          Length = 368

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 81/109 (74%)

Query: 25  LEFLPGDIVVAHVEPLRQVLPLSGALRALNQVAVKAKVGGEVREVLVRAGEAVALGQVLI 84
           +EFL  D+V    + L+  LPLSG+LRALNQ +VKAKV GEV++VLVR GE V  GQV++
Sbjct: 41  VEFLQTDLVQVARQDLQLSLPLSGSLRALNQASVKAKVSGEVKQVLVREGEPVRAGQVIV 100

Query: 85  RMDTSEYQAKVEQARGSLVASRGQLDIATKTRDNNLALLDKGFISRNAF 133
           R+D +EY+A+  QARG ++A+RGQ + + +T + N  L+ KGFIS+ AF
Sbjct: 101 RIDPAEYEARAAQARGQMLAARGQFENSRQTWERNRELVGKGFISQTAF 149