BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0197.p (174 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_294977.1| secretion protein HlyD [Ralstonia eutropha JMP1... 166 1e-39 ref|YP_727319.1| cation/multidrug efflux system, mebrane-fusion ... 159 2e-37 ref|YP_004686607.1| cation/multidrug efflux system, mebrane-fusi... 157 6e-37 ref|YP_001796244.1| secretion protein, nolF homolog [Cupriavidus... 154 6e-36 ref|YP_002006351.1| secretion protein, hlyd family [Cupriavidus ... 153 8e-36 >ref|YP_294977.1| secretion protein HlyD [Ralstonia eutropha JMP134] gb|AAZ60133.1| Secretion protein HlyD [Ralstonia eutropha JMP134] Length = 370 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 3/171 (1%) Query: 1 VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60 VS D +L+DVVDLR +ELEAPVP AD+ + +GQ V + VEG AG +VRINPA Sbjct: 203 VSPDTRLIDVVDLRVLELEAPVPMADVARASVGQSVQLDVEG-AGQFAGALVRINPAVSQ 261 Query: 61 GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120 G+RSIMVYVR+ N D LRAGMFA +L L +R V++VPA+A++++G +A+VY IENG Sbjct: 262 GTRSIMVYVRVQNDDGKLRAGMFARGALVLGQRSGVVSVPASAVRSDGERAFVYVIENGV 321 Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVKILPA 171 L R V TG+R D VEI SGL G +V+ NLG L +G+ V+ + A Sbjct: 322 LAERAVQTGVR--DEGSGMVEIVSGLTTGTEVVRNNLGTLRSGSQVRRVKA 370 >ref|YP_727319.1| cation/multidrug efflux system, mebrane-fusion component [Ralstonia eutropha H16] emb|CAJ93951.1| Cation/multidrug efflux system, mebrane-fusion component [Ralstonia eutropha H16] Length = 370 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 3/167 (1%) Query: 1 VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60 VS D +L+DVVDLR +ELEAP+P AD+ + +GQ V + VEG GK+VRINPA Sbjct: 203 VSPDTRLVDVVDLRVLELEAPIPMADVARAAVGQPVALDVEG-AGRFTGKLVRINPAVSQ 261 Query: 61 GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120 G+RSIMVY+RI+N D LRAGMFA +L L +R V+ VP++A++ EG +A+VY I+ Sbjct: 262 GTRSIMVYIRIENADQTLRAGMFARGALVLGERAGVVAVPSSAVRTEGERAFVYAIDKDT 321 Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVK 167 L R V G+R D VEI SGL G IV+ NLG L +G+ VK Sbjct: 322 LAERPVQLGIR--DEASGMVEIVSGLDAGTEIVRNNLGTLRSGSQVK 366 >ref|YP_004686607.1| cation/multidrug efflux system, mebrane-fusion component AcrA [Cupriavidus necator N-1] gb|AEI78126.1| cation/multidrug efflux system, mebrane-fusion component AcrA [Cupriavidus necator N-1] Length = 370 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/171 (49%), Positives = 112/171 (65%), Gaps = 3/171 (1%) Query: 1 VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60 VS D +L+DVVDLR +ELEAP+P AD+ + +GQ V + VEG GK+VRINPA Sbjct: 203 VSPDTRLVDVVDLRVLELEAPIPMADVARAAVGQPVALDVEG-AGRFTGKLVRINPAVSQ 261 Query: 61 GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120 G+RSIMVY+R++N D LRAGMFA +L L +R V VP++A++ EG +A+VY I+ Sbjct: 262 GTRSIMVYIRVENADQTLRAGMFARGALVLGERAGVAAVPSSAVRTEGERAFVYAIDKDT 321 Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVKILPA 171 L R V G+R D VEI SGL G IV+ NLG L +G+ VK + A Sbjct: 322 LAERPVQLGIR--DEASGMVEIVSGLDAGTEIVRNNLGTLRSGSQVKRVKA 370 >ref|YP_001796244.1| secretion protein, nolF homolog [Cupriavidus taiwanensis] emb|CAP64055.1| secretion protein, nolF homolog [Cupriavidus taiwanensis LMG 19424] Length = 368 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 89/169 (52%), Positives = 116/169 (68%), Gaps = 3/169 (1%) Query: 1 VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60 VS D +L+DVVDLR +ELEAP+P A++ + +GQ V + VEG AGK+VRINPA Sbjct: 201 VSPDTRLVDVVDLRVLELEAPIPMAEVARAAVGQPVALEVEG-AGGFAGKLVRINPAVSE 259 Query: 61 GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120 G+RSIMVYVR+DN D LRAGMFA +L L +R AV+ VP +A++ EG +A+VY IE Sbjct: 260 GTRSIMVYVRVDNADQKLRAGMFARGALVLGQRAAVVAVPVSAVRTEGERAFVYAIERDT 319 Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVKIL 169 L R V GLR D G VEI +GL GA IV+ NLG L +G+ V+++ Sbjct: 320 LAERPVQLGLR--DEAGGMVEIVAGLDAGAEIVRNNLGTLRSGSQVRLV 366 >ref|YP_002006351.1| secretion protein, hlyd family [Cupriavidus taiwanensis LMG 19424] emb|CAQ70288.1| Putative secretion protein, HlyD family [Cupriavidus taiwanensis LMG 19424] Length = 369 Score = 153 bits (387), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 3/171 (1%) Query: 1 VSVDNKLLDVVDLRQMELEAPVPTADILKVKLGQEVLVRVEGLPDAVAGKVVRINPATQS 60 VS D +L+DVVDLR +ELEAP+P AD+ + +GQ V + VEG AG +VRINPA Sbjct: 202 VSPDTRLVDVVDLRVLELEAPIPMADVARAAVGQPVALEVEG-AGHFAGTLVRINPAVSE 260 Query: 61 GSRSIMVYVRIDNPDNLLRAGMFADASLTLDKRDAVLTVPATAIQNEGGKAYVYTIENGK 120 G+RSIMVY+R+DNP+ LRAGMFA +L L +R AV+ VP +A++ EG +A+VY IE Sbjct: 261 GTRSIMVYIRVDNPEQQLRAGMFARGALVLGQRAAVVAVPVSAVRTEGERAFVYAIERDT 320 Query: 121 LTRRDVVTGLRGVDSKGNAVEISSGLQEGARIVKANLGNLNAGTPVKILPA 171 L R V GLR D G VEI +GL GA IV+ NLG L +G+ V+ + A Sbjct: 321 LAERPVQLGLR--DEAGGMVEIVAGLDAGAEIVRNNLGTLRSGSQVRRVKA 369