BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0186.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-acid (KDO) trans... 537 e-150 gb|ADU90688.1| putative 3-deoxy-D-manno-octulosonic acid transfe... 534 e-149 ref|YP_004751485.1| 3-deoxy-D-manno-octulosonic-acid transferase... 523 e-146 ref|YP_001100961.1| 3-deoxy-D-manno-octulosonic-acid transferase... 511 e-142 ref|YP_001354632.1| 3-deoxy-D-manno-octulosonic-acid transferase... 505 e-141 >ref|YP_003773908.1| 3-deoxy-d-manno-octulosonic-acid (KDO) transferase [Herbaspirillum seropedicae SmR1] gb|ADJ62000.1| 3-deoxy-d-manno-octulosonic-acid (KDO) transferase protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 279/422 (66%), Positives = 323/422 (76%), Gaps = 1/422 (0%) Query: 1 MRLLYSALWWVGLPFVLLRLWRRGRKEPGYRQHIGERLGFYDQFRQRALSPLIWVHAVSV 60 MR LYSALWW +P VLLRLWRRGR+EPGYR H+ ERLGFY + + IWVHAVSV Sbjct: 1 MRWLYSALWWFAMPLVLLRLWRRGRQEPGYRAHVAERLGFYPRLPD-PQARFIWVHAVSV 59 Query: 61 GETRAAQPLIEALLQTYPQHTILLTHMTATGRATGQQLFAAHGERVIQSYFPYDTGWMCA 120 GETRAA+PL++ALL YP ILLT MTATGRATG Q+F HG RV+QS+ PYDTGWMC+ Sbjct: 60 GETRAAEPLVDALLSRYPDCKILLTCMTATGRATGAQVFGKHGARVVQSFLPYDTGWMCS 119 Query: 121 RFLRYFKPRICILMETEVWPNMVRQCVRAGVPVMLANARLSARSLRRGQRFGAILLEAAA 180 RFLR+F+P CILMETEVWPN++RQC R VPVMLANARLS RSLRRGQRF ++L AA Sbjct: 120 RFLRHFRPLACILMETEVWPNLIRQCRRHDVPVMLANARLSERSLRRGQRFASLLRPAAE 179 Query: 181 GIDCVAAQSEQDAERLRLFGARQVHVTGSIKFDVEAPAEMVALGRQWRAQFGERPVLLCA 240 ID V AQS+ DA RL FGAR V VTGS+KFDV+ P ++V GR+W+ GER VLLCA Sbjct: 180 AIDVVGAQSDGDARRLLAFGARHVEVTGSLKFDVQPPMQVVERGREWKRALGERKVLLCA 239 Query: 241 STREGEEALILDALRGVANRDFLTVIVPRHPQRFDEVAALATTRGFATQRRSSLGTASVA 300 STREGEE LILDAL + D+LTVIVPRHPQRFDEVAAL RG +RRS L Sbjct: 240 STREGEEVLILDALAKLGRPDWLTVIVPRHPQRFDEVAALIRARGLRLRRRSELAQDFAV 299 Query: 301 RAVDVVLGDSMGEMFAYYAACDVAFIGGSLLPLGGQNLIEACVLGKPVMIGAHTFNFQVI 360 VDVVLGDSMGEMFAYYA DV+FIGGSLLPLGGQNLIEA LGKPV+IG HTFNF I Sbjct: 300 EDVDVVLGDSMGEMFAYYALSDVSFIGGSLLPLGGQNLIEALALGKPVLIGEHTFNFLRI 359 Query: 361 SEQAVAAGAAVRIADADDLLRAAVKLLAQAEPRETMSGHAAAFARRHRGATQRTLGLVEG 420 +E+AVA GAAVR+ DA +LLR L+A+ + + M+ A +FA+RH+GAT R+L L+ Sbjct: 360 TEEAVADGAAVRVGDAVELLRQWSILIAEPDRIDEMAQAALSFAQRHQGATDRSLVLLAP 419 Query: 421 LL 422 LL Sbjct: 420 LL 421 >gb|ADU90688.1| putative 3-deoxy-D-manno-octulosonic acid transferase [Collimonas sp. MPS11E8] Length = 448 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 268/433 (61%), Positives = 320/433 (73%), Gaps = 11/433 (2%) Query: 1 MRLLYSALWWVGLPFVLLRLWRRGRKEPGYRQHIGERLGFYDQF-RQRALSPLIWVHAVS 59 +RLLYSA+WW+ +P VLLRLWRRGRKEPGYRQH+ ER+GFY Q A IWVHAVS Sbjct: 15 IRLLYSAVWWLAMPMVLLRLWRRGRKEPGYRQHVAERIGFYPPLASQFAARKFIWVHAVS 74 Query: 60 VGETRAAQPLIEALLQTYPQHTILLTHMTATGRATGQQLFAAHGERVIQSYFPYDTGWMC 119 VGETRAA+PLI+ALL YP+H I+LTHMTATGR TG+QLF RV+QS+ PYDTGWM Sbjct: 75 VGETRAAEPLIKALLDAYPEHAIVLTHMTATGRETGKQLFG-QSPRVLQSFLPYDTGWMV 133 Query: 120 ARFLRYFKPRICILMETEVWPNMVRQCVRAGVPVMLANARLSARSLRRGQRFGAILLEAA 179 ARFLR+F P +C+LMETEVWPN++ QC R VPV L NARLS RSLRRG+ F ++ EAA Sbjct: 134 ARFLRHFSPCLCVLMETEVWPNLIVQCGRCRVPVALVNARLSERSLRRGKSFATLMTEAA 193 Query: 180 AGIDCVAAQSEQDAERLRLFGARQVHVTGSIKFDVEAPAEMVALGRQWRAQFGERPVLLC 239 +G+ CV AQ++ DA RLR G V +TG++KFDV ++ALG R Q G+R VLLC Sbjct: 194 SGMSCVGAQTDADAGRLRQLGGSNVQITGNLKFDVTPAPGLLALGAALRTQIGQRSVLLC 253 Query: 240 ASTREGEEALILDALR------GVAN---RDFLTVIVPRHPQRFDEVAALATTRGFATQR 290 ASTREGEE LIL AL G A+ D L VIVPRHPQRFDEVAALAT +G + R Sbjct: 254 ASTREGEEELILAALSKRMQDPGAASALPPDLLLVIVPRHPQRFDEVAALATAKGLSPLR 313 Query: 291 RSSLGTASVARAVDVVLGDSMGEMFAYYAACDVAFIGGSLLPLGGQNLIEACVLGKPVMI 350 RSSLG V V++GDSMGEMFAYYA CDVAFIGGSLLP+GGQNLIEA +GKPV+I Sbjct: 314 RSSLGQQPVLAQAKVLVGDSMGEMFAYYAMCDVAFIGGSLLPMGGQNLIEAFAVGKPVLI 373 Query: 351 GAHTFNFQVISEQAVAAGAAVRIADADDLLRAAVKLLAQAEPRETMSGHAAAFARRHRGA 410 G HTFNF I+EQA+AAGAA R++D +L AA +LL R+ M HA FA++HRGA Sbjct: 374 GPHTFNFSDITEQAIAAGAAQRVSDVGHMLDAAFQLLQSDPQRQVMGQHAIQFAQQHRGA 433 Query: 411 TQRTLGLVEGLLR 423 T RT+ L+ ++ Sbjct: 434 TARTMMLLAPFIK 446 >ref|YP_004751485.1| 3-deoxy-D-manno-octulosonic-acid transferase [Collimonas fungivorans Ter331] gb|AEK60662.1| 3-deoxy-D-manno-octulosonic-acid transferase [Collimonas fungivorans Ter331] Length = 440 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/423 (60%), Positives = 310/423 (73%), Gaps = 6/423 (1%) Query: 1 MRLLYSALWWVGLPFVLLRLWRRGRKEPGYRQHIGERLGFYDQFRQRALSP-LIWVHAVS 59 +RLLYSA+WW+ +P VLLRLWRRG KEPGYRQH+ ER+GFY S +WVHAVS Sbjct: 15 IRLLYSAVWWLAMPLVLLRLWRRGSKEPGYRQHVAERIGFYPPIAPSLASRRFLWVHAVS 74 Query: 60 VGETRAAQPLIEALLQTYPQHTILLTHMTATGRATGQQLFAAHGERVIQSYFPYDTGWMC 119 VGETRAA+PLI A+L+ YP+H ILLTHMTATGRATGQ LF RV+Q + PYDTGWM Sbjct: 75 VGETRAAEPLIAAMLEAYPEHAILLTHMTATGRATGQALFG-KSPRVLQCFLPYDTGWMA 133 Query: 120 ARFLRYFKPRICILMETEVWPNMVRQCVRAGVPVMLANARLSARSLRRGQRFGAILLEAA 179 RFLR+F P +C+LMETEVWPN++ QC VPV L NARLS RSLRRG+RF ++ EAA Sbjct: 134 GRFLRHFSPLLCVLMETEVWPNLIAQCGHYKVPVALVNARLSERSLRRGKRFSTLMTEAA 193 Query: 180 AGIDCVAAQSEQDAERLRLFGARQVHVTGSIKFDVEAPAEMVALGRQWRAQFGERPVLLC 239 G+ CV AQ+E DA RLR G V VTG++KFDV ++A+G R Q G RPVLLC Sbjct: 194 GGMSCVGAQTEADAGRLRQLGGDNVQVTGNLKFDVTPAPALLAIGAVMRGQIGSRPVLLC 253 Query: 240 ASTREGEEALILDAL----RGVANRDFLTVIVPRHPQRFDEVAALATTRGFATQRRSSLG 295 ASTR+GEE LIL+AL + A D LT+IVPRHPQRFDEVA +A +G RRS+LG Sbjct: 254 ASTRDGEEELILEALSKRSQDTAYADLLTIIVPRHPQRFDEVAEMAAAKGLLPLRRSALG 313 Query: 296 TASVARAVDVVLGDSMGEMFAYYAACDVAFIGGSLLPLGGQNLIEACVLGKPVMIGAHTF 355 V + V V+LGDSMGEMFAYY ACDVAFIGGSLLP+GGQNLIEA +GKPV+IG HTF Sbjct: 314 DQVVPQNVKVLLGDSMGEMFAYYMACDVAFIGGSLLPMGGQNLIEAFAVGKPVLIGPHTF 373 Query: 356 NFQVISEQAVAAGAAVRIADADDLLRAAVKLLAQAEPRETMSGHAAAFARRHRGATQRTL 415 NF I+EQA+AAGAA R+ D +L A LL + R+ M A FA++HRGA+ RT+ Sbjct: 374 NFSDITEQAIAAGAAQRVNDVGMMLDTAQHLLRTDQQRQEMGKQALHFAQQHRGASARTM 433 Query: 416 GLV 418 ++ Sbjct: 434 AML 436 >ref|YP_001100961.1| 3-deoxy-D-manno-octulosonic-acid transferase [Herminiimonas arsenicoxydans] Length = 453 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 257/423 (60%), Positives = 310/423 (73%), Gaps = 1/423 (0%) Query: 1 MRLLYSALWWVGLPFVLLRLWRRGRKEPGYRQHIGERLGFYDQFRQRALSPLIWVHAVSV 60 MRL+YS WW LP +LLRL+ RGR+EPGYRQHI ERLGFY SP++WVHAVSV Sbjct: 32 MRLIYSLAWWFALPLILLRLYVRGRQEPGYRQHIAERLGFYRTDADVRSSPVLWVHAVSV 91 Query: 61 GETRAAQPLIEALLQTYPQHTILLTHMTATGRATGQQLFAAHGERVIQSYFPYDTGWMCA 120 GETRAAQPLI+ALL YP HT+LLTHMT TGRATG+ LFAA RV+QSY PYDTGWM Sbjct: 92 GETRAAQPLIDALLAAYPTHTLLLTHMTPTGRATGKALFAAQ-PRVVQSYLPYDTGWMVR 150 Query: 121 RFLRYFKPRICILMETEVWPNMVRQCVRAGVPVMLANARLSARSLRRGQRFGAILLEAAA 180 RFLR+FKP++C+LMETEVWPN++ QC + GVPV L NARLS RSL + RF + +EAA Sbjct: 151 RFLRHFKPKLCVLMETEVWPNVMAQCAQQGVPVALVNARLSGRSLAKALRFPTLFVEAAK 210 Query: 181 GIDCVAAQSEQDAERLRLFGARQVHVTGSIKFDVEAPAEMVALGRQWRAQFGERPVLLCA 240 + CVAAQ+E DA R+R GA VHVTGSIKFDV P +M+ G R Q G RP+L+CA Sbjct: 211 AMSCVAAQTESDAARIRQLGAPAVHVTGSIKFDVTPPPDMLQRGAMLRQQLGSRPILVCA 270 Query: 241 STREGEEALILDALRGVANRDFLTVIVPRHPQRFDEVAALATTRGFATQRRSSLGTASVA 300 +TR+GEEALILDA D L ++VPRHPQRF++VA + R RRS+ G A + Sbjct: 271 NTRDGEEALILDAWLQQNRPDVLLMLVPRHPQRFNDVAQMIRARSLHLARRSTSGDAEIG 330 Query: 301 RAVDVVLGDSMGEMFAYYAACDVAFIGGSLLPLGGQNLIEACVLGKPVMIGAHTFNFQVI 360 V V LGD+MGEMFAYYAACDVAF+GGSLLPLGG NLIEA +GKPV+IG HTFNF Sbjct: 331 VDVRVFLGDTMGEMFAYYAACDVAFVGGSLLPLGGHNLIEASAVGKPVLIGPHTFNFADA 390 Query: 361 SEQAVAAGAAVRIADADDLLRAAVKLLAQAEPRETMSGHAAAFARRHRGATQRTLGLVEG 420 ++ A+AAG A+R+ADA DL A++LL A R M A FA++H GAT RT+ L+ Sbjct: 391 ADNAIAAGGALRVADAADLCVQAMRLLDDAATRIAMGERARHFAQQHGGATARTMALLTP 450 Query: 421 LLR 423 L++ Sbjct: 451 LIK 453 >ref|YP_001354632.1| 3-deoxy-D-manno-octulosonic-acid transferase [Janthinobacterium sp. Marseille] gb|ABR88762.1| 3-deoxy-D-manno-octulosonic-acid transferase [Janthinobacterium sp. Marseille] Length = 422 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 258/423 (60%), Positives = 315/423 (74%), Gaps = 1/423 (0%) Query: 1 MRLLYSALWWVGLPFVLLRLWRRGRKEPGYRQHIGERLGFYDQFRQRALSPLIWVHAVSV 60 MRL+YS WW LP VLLRL+ RGRKE GYRQHI ERLGFY +PL+WVHAVSV Sbjct: 1 MRLIYSLAWWFALPLVLLRLFVRGRKEAGYRQHIAERLGFYGGVPYDGFTPLLWVHAVSV 60 Query: 61 GETRAAQPLIEALLQTYPQHTILLTHMTATGRATGQQLFAAHGERVIQSYFPYDTGWMCA 120 GETRAAQPLI+ALL YP H +LLTHMT TGRATG+ LF RV+QSY PYDTGWM Sbjct: 61 GETRAAQPLIDALLAAYPTHQLLLTHMTPTGRATGKDLFGKQ-PRVLQSYLPYDTGWMVG 119 Query: 121 RFLRYFKPRICILMETEVWPNMVRQCVRAGVPVMLANARLSARSLRRGQRFGAILLEAAA 180 RFLR F+PRIC+LMETEVWPN++ QCV+ VPV L NARLS RSL + +F ++ +EAAA Sbjct: 120 RFLRAFQPRICVLMETEVWPNVMAQCVKYEVPVALVNARLSERSLNKALKFPSLFVEAAA 179 Query: 181 GIDCVAAQSEQDAERLRLFGARQVHVTGSIKFDVEAPAEMVALGRQWRAQFGERPVLLCA 240 + CVAAQ+E DA+R++ GA VHVTGSIKFDV PAEM+ G R Q G R VL+CA Sbjct: 180 AMSCVAAQTESDAQRVKQLGAPAVHVTGSIKFDVTPPAEMLQRGALLRTQLGPRKVLVCA 239 Query: 241 STREGEEALILDALRGVANRDFLTVIVPRHPQRFDEVAALATTRGFATQRRSSLGTASVA 300 +TR+GEEALILDA++G+ D L +IVPRHPQRFD+VA + G A RRS G+A +A Sbjct: 240 NTRDGEEALILDAMQGLNRPDILLMIVPRHPQRFDDVAQMVLAHGLALARRSGAGSAPLA 299 Query: 301 RAVDVVLGDSMGEMFAYYAACDVAFIGGSLLPLGGQNLIEACVLGKPVMIGAHTFNFQVI 360 V V LGD+MGEMFAYY+ACD+AF+GGSLLPLGG NLIEA +GKPV++G HTFNF Sbjct: 300 PDVQVFLGDTMGEMFAYYSACDLAFVGGSLLPLGGHNLIEASAVGKPVLVGPHTFNFADA 359 Query: 361 SEQAVAAGAAVRIADADDLLRAAVKLLAQAEPRETMSGHAAAFARRHRGATQRTLGLVEG 420 +E A+AAG A+R+A+A DL + A++LL R M A FA++H GAT+RT+ L+ Sbjct: 360 AENAIAAGGAIRVANATDLWQQAIRLLDDDLARNAMGQKAQHFAQQHGGATRRTMSLLMP 419 Query: 421 LLR 423 L++ Sbjct: 420 LIK 422