BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0185.p         (138 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773907.1| hypothetical protein Hsero_0474 [Herbaspiril...   251   2e-65
ref|YP_002944509.1| hypothetical protein Vapar_2618 [Variovorax ...   235   2e-60
ref|YP_004155605.1| hypothetical protein Varpa_3309 [Variovorax ...   233   7e-60
ref|YP_002552933.1| hypothetical protein Dtpsy_1471 [Acidovorax ...   232   2e-59
ref|YP_004751484.1| hypothetical protein CFU_0827 [Collimonas fu...   231   3e-59

>ref|YP_003773907.1| hypothetical protein Hsero_0474 [Herbaspirillum seropedicae SmR1]
 emb|CAM34549.1| hypothetical protein [Herbaspirillum seropedicae]
 emb|CAM35233.1| conserved hypothetical protein [Herbaspirillum seropedicae]
 gb|ADJ61999.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  251 bits (641), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/138 (84%), Positives = 126/138 (91%)

Query: 1   VFSNINPDGVPRVWRVGEPFETVARKFVPRAKPYVPWQAKALKALHVTKSLRSEYDHLML 60
           VF+NINPDGVPRVWRVGEPFETVAR+F+PRAKPYV WQA  LKALHVTKSLRSEYDHLML
Sbjct: 152 VFTNINPDGVPRVWRVGEPFETVARRFLPRAKPYVRWQASVLKALHVTKSLRSEYDHLML 211

Query: 61  QLHDGMKGDMAYQESAGQVTMPFAAGSVWVCFSDQASHAVMSGQYMLEQTLHLPAEKQYD 120
           QLHDGMKGDM YQ+ A QVTMPFAAGSVW+CFSDQASHAVMSGQYM+EQTLHL  E+QYD
Sbjct: 212 QLHDGMKGDMQYQQDAQQVTMPFAAGSVWICFSDQASHAVMSGQYMMEQTLHLAPERQYD 271

Query: 121 PAASPLAILSKLTGRQLV 138
           P +SPLAIL++L G  LV
Sbjct: 272 PQSSPLAILTRLVGHPLV 289


>ref|YP_002944509.1| hypothetical protein Vapar_2618 [Variovorax paradoxus S110]
 gb|ACS19243.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 289

 Score =  235 bits (599), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 121/138 (87%)

Query: 1   VFSNINPDGVPRVWRVGEPFETVARKFVPRAKPYVPWQAKALKALHVTKSLRSEYDHLML 60
           VF+N+NP+G PRVWRVGEPFE +AR+F+PRAKPYV WQA+ L+ALHVTKS RSEYDHLML
Sbjct: 152 VFTNVNPEGAPRVWRVGEPFEDIARRFLPRAKPYVRWQARLLQALHVTKSFRSEYDHLML 211

Query: 61  QLHDGMKGDMAYQESAGQVTMPFAAGSVWVCFSDQASHAVMSGQYMLEQTLHLPAEKQYD 120
           QLHDGMK DMAYQE++ Q    F  GSVWVCFSDQ SHAVM+GQYMLEQTLHLPA KQY+
Sbjct: 212 QLHDGMKSDMAYQENSPQERAEFPPGSVWVCFSDQTSHAVMAGQYMLEQTLHLPASKQYN 271

Query: 121 PAASPLAILSKLTGRQLV 138
           P +SPLAILS+LTGR LV
Sbjct: 272 PDSSPLAILSRLTGRTLV 289


>ref|YP_004155605.1| hypothetical protein Varpa_3309 [Variovorax paradoxus EPS]
 gb|ADU37494.1| hypothetical protein Varpa_3309 [Variovorax paradoxus EPS]
          Length = 289

 Score =  233 bits (594), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 120/138 (86%)

Query: 1   VFSNINPDGVPRVWRVGEPFETVARKFVPRAKPYVPWQAKALKALHVTKSLRSEYDHLML 60
           VF+N+NP+G PRVWRVGEPFE +AR+F+PRAKPYV WQAK L+ALHVTKS RSEYDHLML
Sbjct: 152 VFTNVNPEGAPRVWRVGEPFEDIARRFLPRAKPYVRWQAKLLQALHVTKSFRSEYDHLML 211

Query: 61  QLHDGMKGDMAYQESAGQVTMPFAAGSVWVCFSDQASHAVMSGQYMLEQTLHLPAEKQYD 120
           QLHDGMK DMAYQE++ Q    F  GSVWVCFSDQ SHAVM+GQYMLEQTLHL A KQY+
Sbjct: 212 QLHDGMKSDMAYQETSPQEKAEFPPGSVWVCFSDQTSHAVMAGQYMLEQTLHLAASKQYN 271

Query: 121 PAASPLAILSKLTGRQLV 138
           P +SPLAILS+LTGR LV
Sbjct: 272 PDSSPLAILSRLTGRNLV 289


>ref|YP_002552933.1| hypothetical protein Dtpsy_1471 [Acidovorax ebreus TPSY]
 gb|ACM32933.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 293

 Score =  232 bits (591), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query: 1   VFSNINPDGVPRVWRVGEPFETVARKFVPRAKPYVPWQAKALKALHVTKSLRSEYDHLML 60
           VF+N+NPDG PRVWRVGEPFE +ARKF+PRAKPY  WQAK L+AL VTKS RSEYDHLML
Sbjct: 151 VFANVNPDGAPRVWRVGEPFEAMARKFLPRAKPYSAWQAKVLQALRVTKSFRSEYDHLML 210

Query: 61  QLHDGMKGDMAYQESAGQVTMPFAAGSVWVCFSDQASHAVMSGQYMLEQTLHLPAEKQYD 120
           QLHDGMKGD+ YQ ++ Q T+PF AGSVWVCFSDQA+HAVMSGQYMLEQTLHLPA   YD
Sbjct: 211 QLHDGMKGDLEYQRTSPQETVPFPAGSVWVCFSDQATHAVMSGQYMLEQTLHLPASHAYD 270

Query: 121 PAASPLAILSKLTGRQL 137
             ASPLAIL++LTGR L
Sbjct: 271 REASPLAILTRLTGRPL 287


>ref|YP_004751484.1| hypothetical protein CFU_0827 [Collimonas fungivorans Ter331]
 gb|AEK60661.1| hypothetical protein CFU_0827 [Collimonas fungivorans Ter331]
          Length = 301

 Score =  231 bits (589), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/138 (77%), Positives = 117/138 (84%)

Query: 1   VFSNINPDGVPRVWRVGEPFETVARKFVPRAKPYVPWQAKALKALHVTKSLRSEYDHLML 60
           VF+N+NPDGVPRVWRVGEPFE VA++F+PR K Y  WQA+ L+ALHVTKSLRSEYDHLML
Sbjct: 163 VFANVNPDGVPRVWRVGEPFEDVAQRFLPRVKAYSRWQAQVLQALHVTKSLRSEYDHLML 222

Query: 61  QLHDGMKGDMAYQESAGQVTMPFAAGSVWVCFSDQASHAVMSGQYMLEQTLHLPAEKQYD 120
           QLHD MK D  YQ+   QVT PFAAGSVWVCFSDQ  HAVM+GQYMLEQTLHLPA KQYD
Sbjct: 223 QLHDAMKSDPEYQKDGPQVTQPFAAGSVWVCFSDQTPHAVMAGQYMLEQTLHLPAAKQYD 282

Query: 121 PAASPLAILSKLTGRQLV 138
           P ASPLAIL +LTGR L 
Sbjct: 283 PGASPLAILRRLTGRALT 300