BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0184.p         (128 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773907.1| hypothetical protein Hsero_0474 [Herbaspiril...   182   1e-44
ref|YP_002944509.1| hypothetical protein Vapar_2618 [Variovorax ...   168   2e-40
ref|YP_004155605.1| hypothetical protein Varpa_3309 [Variovorax ...   167   3e-40
ref|YP_004751484.1| hypothetical protein CFU_0827 [Collimonas fu...   167   7e-40
ref|YP_003279254.1| hypothetical protein CtCNB1_3212 [Comamonas ...   158   3e-37

>ref|YP_003773907.1| hypothetical protein Hsero_0474 [Herbaspirillum seropedicae SmR1]
 emb|CAM34549.1| hypothetical protein [Herbaspirillum seropedicae]
 emb|CAM35233.1| conserved hypothetical protein [Herbaspirillum seropedicae]
 gb|ADJ61999.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 102/126 (80%)

Query: 1   MESQIIEIGVTDWQVVEPNPAWIAGLEAGKVLYFPQLPFELLPEEKVLLKPEIRDPKVRN 60
           MESQIIEIG+T+WQ   P+  WI  LEAGKVLYFP+L F+LL  E+ LL P +RDPKVRN
Sbjct: 1   MESQIIEIGLTEWQADNPHQEWITALEAGKVLYFPRLGFQLLESERALLDPAVRDPKVRN 60

Query: 61  ISLDAAGHLKGAVGDTATQLALALMIGRFREQAQSLVYSLLPKYQGALRLAPTSYRPTRV 120
           ISLDA GH+KGA GD   QLALA M+GRFREQA  LV+SLLPKY  ALR+APTSYRP +V
Sbjct: 61  ISLDARGHIKGAAGDAEQQLALAAMVGRFREQALGLVHSLLPKYSDALRVAPTSYRPMQV 120

Query: 121 ETRARA 126
           ETRA++
Sbjct: 121 ETRAQS 126


>ref|YP_002944509.1| hypothetical protein Vapar_2618 [Variovorax paradoxus S110]
 gb|ACS19243.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 289

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 97/126 (76%)

Query: 1   MESQIIEIGVTDWQVVEPNPAWIAGLEAGKVLYFPQLPFELLPEEKVLLKPEIRDPKVRN 60
           ME+Q++E+ ++DW+   PN AWIA LEAGKVLYFP+L FELLPEE+ LL P +  P VRN
Sbjct: 1   METQLVELDLSDWRAATPNEAWIAQLEAGKVLYFPRLGFELLPEERSLLTPSLLSPDVRN 60

Query: 61  ISLDAAGHLKGAVGDTATQLALALMIGRFREQAQSLVYSLLPKYQGALRLAPTSYRPTRV 120
           ISLDA G LKGAVGD A Q   A M+GRFR QAQ L++ LLP Y  ALRLAPTSYRP +V
Sbjct: 61  ISLDANGKLKGAVGDEAVQRTAAAMVGRFRAQAQQLIHGLLPHYTPALRLAPTSYRPAQV 120

Query: 121 ETRARA 126
           ETR ++
Sbjct: 121 ETRVQS 126


>ref|YP_004155605.1| hypothetical protein Varpa_3309 [Variovorax paradoxus EPS]
 gb|ADU37494.1| hypothetical protein Varpa_3309 [Variovorax paradoxus EPS]
          Length = 289

 Score =  167 bits (424), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 95/126 (75%)

Query: 1   MESQIIEIGVTDWQVVEPNPAWIAGLEAGKVLYFPQLPFELLPEEKVLLKPEIRDPKVRN 60
           M +Q++E+ +TDW    PN AWIA LEAGKVLYFP+L FELLPEE+ LL P +  P VRN
Sbjct: 1   MGTQLVELDLTDWNAATPNEAWIAALEAGKVLYFPRLGFELLPEERSLLTPSLLSPDVRN 60

Query: 61  ISLDAAGHLKGAVGDTATQLALALMIGRFREQAQSLVYSLLPKYQGALRLAPTSYRPTRV 120
           ISLDA G LKGAVGD A Q   A M+GRFR QAQ L++ LLP Y  ALRLAPTSYRP +V
Sbjct: 61  ISLDANGKLKGAVGDEAVQRTAAAMVGRFRAQAQQLIHGLLPHYTPALRLAPTSYRPAQV 120

Query: 121 ETRARA 126
           ETR ++
Sbjct: 121 ETRVQS 126


>ref|YP_004751484.1| hypothetical protein CFU_0827 [Collimonas fungivorans Ter331]
 gb|AEK60661.1| hypothetical protein CFU_0827 [Collimonas fungivorans Ter331]
          Length = 301

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 96/129 (74%), Gaps = 3/129 (2%)

Query: 1   MESQIIEIGVTDWQVVEPNPAWIAGLEAGKVLYFPQLPFELLPEEKVLLKPEIRDPKVRN 60
           ME QI+EI +TDWQ+  PN AWI+ LEAGKVLYFP L F    +E+  L P IRDPK RN
Sbjct: 9   MEQQILEIDITDWQISTPNSAWISALEAGKVLYFPHLSFIFTADEQRFLTPAIRDPKSRN 68

Query: 61  ISLDAAGHLKGAVGDTATQLALALMIGRFREQAQSLVYSLLPKY---QGALRLAPTSYRP 117
           ISLDA G LKGA+GD A   ALA MIGRFR QAQ L++SLLP Y   +  LR+APTSYRP
Sbjct: 69  ISLDANGKLKGALGDAADHAALANMIGRFRAQAQQLIHSLLPAYADSRSELRMAPTSYRP 128

Query: 118 TRVETRARA 126
            +VETR+++
Sbjct: 129 MQVETRSQS 137


>ref|YP_003279254.1| hypothetical protein CtCNB1_3212 [Comamonas testosteroni CNB-2]
 gb|ACY33958.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
          Length = 294

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 94/126 (74%)

Query: 1   MESQIIEIGVTDWQVVEPNPAWIAGLEAGKVLYFPQLPFELLPEEKVLLKPEIRDPKVRN 60
           MESQI++I  TDW  V+    W A +EAGKVLYFPQL F+L  +EK LL+P++RDPK RN
Sbjct: 1   MESQIVKIDATDWSQVQGRDEWTAAVEAGKVLYFPQLSFQLTEQEKALLRPDVRDPKTRN 60

Query: 61  ISLDAAGHLKGAVGDTATQLALALMIGRFREQAQSLVYSLLPKYQGALRLAPTSYRPTRV 120
           ISL+  G +KG  GD ATQ  +A M+GRFREQA +L+  L P Y   +R+APTSYRP++V
Sbjct: 61  ISLNVDGSIKGVAGDEATQAQVAGMVGRFREQATALIAGLFPAYMPVVRMAPTSYRPSQV 120

Query: 121 ETRARA 126
           ETRA++
Sbjct: 121 ETRAQS 126