BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0176.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353948.1| capsular polysaccharide synthesis enzyme [Ja... 629 e-178 ref|YP_001187367.1| polysaccharide biosynthesis protein CapD [Ps... 595 e-168 ref|ZP_08484380.1| polysaccharide biosynthesis protein CapD [Met... 592 e-167 ref|YP_262185.1| trifunctional UDP-D-GlcNAc 4,6-dehydratase/5-ep... 592 e-167 ref|YP_001099453.1| putative UDP-glucose 4-epimerase [Herminiimo... 574 e-162 >ref|YP_001353948.1| capsular polysaccharide synthesis enzyme [Janthinobacterium sp. Marseille] gb|ABR89146.1| capsular polysaccharide synthesis enzyme [Janthinobacterium sp. Marseille] Length = 336 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 299/336 (88%), Positives = 322/336 (95%) Query: 1 MFDNKVLMITGGTGSFGNTVLKRFLDTAVREIRIFSRDEKKQEDMRIALKNDKVKFYIGD 60 MFD+KVLMITGGTGSFGNTVLKRFLDT VREIRIFSRDEKKQEDMRIAL N+KVKFYIGD Sbjct: 1 MFDDKVLMITGGTGSFGNTVLKRFLDTDVREIRIFSRDEKKQEDMRIALGNNKVKFYIGD 60 Query: 61 VRNYDSIAQAMVGVDFVFHAAALKQVPSCEFYPMEAIRTNILGTENVLNAAIASKVKRVV 120 VR+YDS+ QAM GVDFVFHAAALKQVPSCEFYPMEA+RTN+LGTENVLNAAI+SKVKRVV Sbjct: 61 VRDYDSLTQAMTGVDFVFHAAALKQVPSCEFYPMEAVRTNVLGTENVLNAAISSKVKRVV 120 Query: 121 VLSTDKAVYPINAMGISKAMAEKLVTAKSRGIPADGPRICATRYGNVMASRGSVIPLFVS 180 VLSTDKAVYPINAMGISKAMAEKLV AKSR I GP +C+TRYGNVMASRGSVIPLF++ Sbjct: 121 VLSTDKAVYPINAMGISKAMAEKLVIAKSRTIAEGGPVVCSTRYGNVMASRGSVIPLFIN 180 Query: 181 QLKAGQPLTVTDPNMTRFLMSLEDSVDLVLHAFEHAQQGDLFVQKAPASTVADLAQALRE 240 QLK+GQP+TVTDPNMTRFLMSLEDSVDLVLHAFEHA+QGDLFVQKAPASTVADLAQALRE Sbjct: 181 QLKSGQPITVTDPNMTRFLMSLEDSVDLVLHAFEHAEQGDLFVQKAPASTVADLAQALRE 240 Query: 241 LFKLDNPVKVIGTRHGEKLYESLISREEMAKAEDMGRYYRVPADNRDLNYNKYFVEGESH 300 LF+L+N VKVIGTRHGEKLYESLISREEMAKA+DMGRYYR+PADNRDLNY+KYFVEGESH Sbjct: 241 LFQLNNEVKVIGTRHGEKLYESLISREEMAKADDMGRYYRIPADNRDLNYSKYFVEGESH 300 Query: 301 ISELDDYTSHNTQRLNVEEIKTLLLKLPEIREALDA 336 ISELDDYTSHNT+RLNVE+IK LLL L E+REAL+A Sbjct: 301 ISELDDYTSHNTERLNVEQIKQLLLNLMEVREALNA 336 >ref|YP_001187367.1| polysaccharide biosynthesis protein CapD [Pseudomonas mendocina ymp] gb|ABP84635.1| polysaccharide biosynthesis protein CapD [Pseudomonas mendocina ymp] Length = 336 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/336 (85%), Positives = 308/336 (91%) Query: 1 MFDNKVLMITGGTGSFGNTVLKRFLDTAVREIRIFSRDEKKQEDMRIALKNDKVKFYIGD 60 MFD+KVLMITGGTGSFG+TVL+RFLDT VREIRIFSRDEKKQEDMRIAL NDKVKFYIGD Sbjct: 1 MFDDKVLMITGGTGSFGHTVLRRFLDTNVREIRIFSRDEKKQEDMRIALANDKVKFYIGD 60 Query: 61 VRNYDSIAQAMVGVDFVFHAAALKQVPSCEFYPMEAIRTNILGTENVLNAAIASKVKRVV 120 VR+ DS+ QAMVGVD++FHAAALKQVPSCEFYPMEA+RTN+ GTENVLNAAIAS VKRVV Sbjct: 61 VRDCDSLKQAMVGVDYIFHAAALKQVPSCEFYPMEAVRTNVNGTENVLNAAIASGVKRVV 120 Query: 121 VLSTDKAVYPINAMGISKAMAEKLVTAKSRGIPADGPRICATRYGNVMASRGSVIPLFVS 180 VLSTDKAVYPINAMGISKAMAEKL+ AKSR IP G +CATRYGNVMASRGSVIPLF+ Sbjct: 121 VLSTDKAVYPINAMGISKAMAEKLMVAKSRMIPEGGTVVCATRYGNVMASRGSVIPLFID 180 Query: 181 QLKAGQPLTVTDPNMTRFLMSLEDSVDLVLHAFEHAQQGDLFVQKAPASTVADLAQALRE 240 QL++G+PLTVTDP MTRFLMSLEDSVDLVLHAFEH +QGDLFVQKAPASTV DLAQAL+E Sbjct: 181 QLRSGEPLTVTDPQMTRFLMSLEDSVDLVLHAFEHGEQGDLFVQKAPASTVGDLAQALKE 240 Query: 241 LFKLDNPVKVIGTRHGEKLYESLISREEMAKAEDMGRYYRVPADNRDLNYNKYFVEGESH 300 LF DNPV+VIGTRHGEKLYESL+SREEMAKAEDMGRYYR+PADNRDLNY KYFVEGE Sbjct: 241 LFGHDNPVRVIGTRHGEKLYESLVSREEMAKAEDMGRYYRIPADNRDLNYKKYFVEGEEK 300 Query: 301 ISELDDYTSHNTQRLNVEEIKTLLLKLPEIREALDA 336 ISELDDYTSHNT RL+V IK LLLKL I+E LDA Sbjct: 301 ISELDDYTSHNTHRLDVPGIKELLLKLDYIKEQLDA 336 >ref|ZP_08484380.1| polysaccharide biosynthesis protein CapD [Methylomicrobium album BG8] gb|EGL04510.1| polysaccharide biosynthesis protein CapD [Methylomicrobium album BG8] Length = 336 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 280/336 (83%), Positives = 311/336 (92%) Query: 1 MFDNKVLMITGGTGSFGNTVLKRFLDTAVREIRIFSRDEKKQEDMRIALKNDKVKFYIGD 60 MFD+KVLMITGGTGSFG+TVL RFLDT VREIRIFSRDEKKQEDMRIAL NDKVKFYIGD Sbjct: 1 MFDDKVLMITGGTGSFGHTVLNRFLDTNVREIRIFSRDEKKQEDMRIALANDKVKFYIGD 60 Query: 61 VRNYDSIAQAMVGVDFVFHAAALKQVPSCEFYPMEAIRTNILGTENVLNAAIASKVKRVV 120 VR+Y S+++A+ GVD++FHAAALKQVPSCEFYPMEA++TN++GTENVLNAAIA+ VKRVV Sbjct: 61 VRDYTSVSEALSGVDYIFHAAALKQVPSCEFYPMEAVKTNVIGTENVLNAAIANGVKRVV 120 Query: 121 VLSTDKAVYPINAMGISKAMAEKLVTAKSRGIPADGPRICATRYGNVMASRGSVIPLFVS 180 VLSTDKAVYPINAMGISKAMAEK++ A+SR IP G +CATRYGNVMASRGSVIPLFV Sbjct: 121 VLSTDKAVYPINAMGISKAMAEKIMVARSRMIPETGTVVCATRYGNVMASRGSVIPLFVG 180 Query: 181 QLKAGQPLTVTDPNMTRFLMSLEDSVDLVLHAFEHAQQGDLFVQKAPASTVADLAQALRE 240 Q++ G+P+TVTDPNMTRFLMSLEDSVDLVLHAFEHA+QGD+FVQKAPASTVADLAQAL+E Sbjct: 181 QIRKGEPITVTDPNMTRFLMSLEDSVDLVLHAFEHARQGDIFVQKAPASTVADLAQALKE 240 Query: 241 LFKLDNPVKVIGTRHGEKLYESLISREEMAKAEDMGRYYRVPADNRDLNYNKYFVEGESH 300 LF +PVKVIGTRHGEKLYESLISREEMAKAEDM RY+R+PADNRDLNYNKYFVEGE+H Sbjct: 241 LFGSASPVKVIGTRHGEKLYESLISREEMAKAEDMARYFRIPADNRDLNYNKYFVEGEAH 300 Query: 301 ISELDDYTSHNTQRLNVEEIKTLLLKLPEIREALDA 336 ISELDDYTSHNT RLNV EIK LL+ L IR+ LDA Sbjct: 301 ISELDDYTSHNTVRLNVAEIKQLLMTLDYIRKELDA 336 >ref|YP_262185.1| trifunctional UDP-D-GlcNAc 4,6-dehydratase/5-epimerase/3-epimerase WbjB [Pseudomonas fluorescens Pf-5] gb|AAY94328.1| trifunctional UDP-D-GlcNAc 4,6-dehydratase/5-epimerase/3-epimerase WbjB [Pseudomonas fluorescens Pf-5] Length = 336 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 286/336 (85%), Positives = 308/336 (91%) Query: 1 MFDNKVLMITGGTGSFGNTVLKRFLDTAVREIRIFSRDEKKQEDMRIALKNDKVKFYIGD 60 MF++KVLMITGGTGSFG+TVL+RFL+T VREIRIFSRDEKKQEDMRIAL NDKVKFYIGD Sbjct: 1 MFNDKVLMITGGTGSFGHTVLRRFLNTDVREIRIFSRDEKKQEDMRIALANDKVKFYIGD 60 Query: 61 VRNYDSIAQAMVGVDFVFHAAALKQVPSCEFYPMEAIRTNILGTENVLNAAIASKVKRVV 120 VR+ DS+ QAMVGVD+VFHAAALKQVPSCEFYPMEA+RTN+ GTENVLNAAIA VKRVV Sbjct: 61 VRDPDSLRQAMVGVDYVFHAAALKQVPSCEFYPMEAVRTNVQGTENVLNAAIACGVKRVV 120 Query: 121 VLSTDKAVYPINAMGISKAMAEKLVTAKSRGIPADGPRICATRYGNVMASRGSVIPLFVS 180 VLSTDKAVYPINAMGISKAMAEKL+ AKSR IP G ICATRYGNVMASRGSVIPLFV Sbjct: 121 VLSTDKAVYPINAMGISKAMAEKLMVAKSRMIPEGGTVICATRYGNVMASRGSVIPLFVE 180 Query: 181 QLKAGQPLTVTDPNMTRFLMSLEDSVDLVLHAFEHAQQGDLFVQKAPASTVADLAQALRE 240 QL+ G+PLTVTDP MTRFLMSLEDSVDLVLHAFEH QQGDLFVQKAPASTV DLAQAL+E Sbjct: 181 QLRKGEPLTVTDPQMTRFLMSLEDSVDLVLHAFEHGQQGDLFVQKAPASTVGDLAQALKE 240 Query: 241 LFKLDNPVKVIGTRHGEKLYESLISREEMAKAEDMGRYYRVPADNRDLNYNKYFVEGESH 300 LF LD+PV+VIGTRHGEKLYESL+SREEMAKAEDMGRYYRVPADNRDLNY KYFVEGE Sbjct: 241 LFSLDSPVRVIGTRHGEKLYESLVSREEMAKAEDMGRYYRVPADNRDLNYKKYFVEGEEK 300 Query: 301 ISELDDYTSHNTQRLNVEEIKTLLLKLPEIREALDA 336 ISELDDYTSHNT+RL++ IK LLLKL I+E L+A Sbjct: 301 ISELDDYTSHNTERLDISGIKHLLLKLDYIQEQLNA 336 >ref|YP_001099453.1| putative UDP-glucose 4-epimerase [Herminiimonas arsenicoxydans] emb|CAL61326.1| putative polysaccharide biosynthesis protein CapE-like [Herminiimonas arsenicoxydans] Length = 336 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 272/336 (80%), Positives = 304/336 (90%) Query: 1 MFDNKVLMITGGTGSFGNTVLKRFLDTAVREIRIFSRDEKKQEDMRIALKNDKVKFYIGD 60 MFD+KVLMITGGTGSFGN VL RFL TAVREIRIFSRDEKKQEDMRIAL N K+KFYIGD Sbjct: 1 MFDDKVLMITGGTGSFGNAVLTRFLSTAVREIRIFSRDEKKQEDMRIALNNPKLKFYIGD 60 Query: 61 VRNYDSIAQAMVGVDFVFHAAALKQVPSCEFYPMEAIRTNILGTENVLNAAIASKVKRVV 120 +RNYDSI +AM GVD++FHAAALKQVPSCEFYPMEA+RTN+LGTENVLNAA+A++VKRVV Sbjct: 61 IRNYDSIHEAMHGVDYIFHAAALKQVPSCEFYPMEAVRTNVLGTENVLNAAVANRVKRVV 120 Query: 121 VLSTDKAVYPINAMGISKAMAEKLVTAKSRGIPADGPRICATRYGNVMASRGSVIPLFVS 180 VLSTDKAVYPINAMGISKAM EKL+ AK+R A ICATRYGNVMASRGSVIPLFV Sbjct: 121 VLSTDKAVYPINAMGISKAMMEKLMVAKARMRSAGETVICATRYGNVMASRGSVIPLFVG 180 Query: 181 QLKAGQPLTVTDPNMTRFLMSLEDSVDLVLHAFEHAQQGDLFVQKAPASTVADLAQALRE 240 QL G+PLTVTDPNMTRFLMSLEDSVDLVLHAFEH +QGD+F+QKAPASTV DLA AL+E Sbjct: 181 QLNEGKPLTVTDPNMTRFLMSLEDSVDLVLHAFEHGEQGDIFIQKAPASTVGDLAIALKE 240 Query: 241 LFKLDNPVKVIGTRHGEKLYESLISREEMAKAEDMGRYYRVPADNRDLNYNKYFVEGESH 300 +F DNPV+VIGTRHGEKLYESL+SREEMAKA+DMGRY+R+PADNRDLNY KYFVEGE+ Sbjct: 241 VFSKDNPVRVIGTRHGEKLYESLVSREEMAKADDMGRYFRIPADNRDLNYAKYFVEGETR 300 Query: 301 ISELDDYTSHNTQRLNVEEIKTLLLKLPEIREALDA 336 ISE+DDYTSHNT+RL +E++K +LLKL I+E L A Sbjct: 301 ISEIDDYTSHNTERLTIEQVKEILLKLDFIQEQLHA 336