BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0160.p         (373 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004512101.1| hypothetical protein Metme_1173 [Methylomona...    68   3e-09

>ref|YP_004512101.1| hypothetical protein Metme_1173 [Methylomonas methanica MC09]
 gb|AEF99601.1| hypothetical protein Metme_1173 [Methylomonas methanica MC09]
          Length = 365

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 135/316 (42%), Gaps = 30/316 (9%)

Query: 52  FDQRIWLNARFDSMQLKDCPEVLILSSSTLGGIDSSNFPKRKFLNGWMEKXPSIEDFEAT 111
           FD+R  L  +F + +LK   +VL++ SS    ++S +F  + + N  +    S+ED+ A 
Sbjct: 61  FDER--LVQKFFAERLKSRRDVLVIGSSRAMNLESKHFSGKSYYNASVSGA-SMEDYYAI 117

Query: 112 THLIEQSN-CPHLEIWMGMDPWFFNAKEKSDRWTSAIQPFTSYQIDHGDIFRSIKGYSSF 170
             +    N  P L + +G+DPW FN   +  RW S  Q +    +   +  + + G +  
Sbjct: 118 LQIYRDINKLPKLLV-LGVDPWVFNRNNEQTRWKSLEQEYLR-SVKENESGQYVLGPAIE 175

Query: 171 W--SRAKDRLSYVTTRESLLYFKTHLGDVTYLDKPKLIAVGPSLDKLCSSTKSELYLRAQ 228
           W  S+ +   S+   R SL Y  +H  D  Y               + ++ + ++ +   
Sbjct: 176 WQFSKLQQLFSFDYLRTSLKY--SHREDRDYY--------------VTTAAELDVNIHRA 219

Query: 229 DGHFFGCPRFS-LTQEQIS-YLSSTYLERNTHGMREWQQVDTDVVQRLSTIMNVLTKRGH 286
           DG       FS  + EQ++ ++    L+   + +  ++++D   +++   ++  L   G 
Sbjct: 220 DGTITYKREFSHRSSEQVADWVRKQLLKTPLYSLGGYKELDLAYIKQFEALILNLYAEGT 279

Query: 287 RIVLIAPVYHPTTYNSLIANEHVQSKLNFIDAR--MKELAYRHGSSFVNLRNPQIPGCTA 344
           +++L    YHP  Y   + N+        IDA   +   A  H        NP+   C+ 
Sbjct: 280 KVILFLAPYHPDFYK--VMNDATSPYRRVIDAEDYLYHFAETHKFPIFGSYNPRRIPCSR 337

Query: 345 SEFEDSHHAGADCLKK 360
            +F D  H    C+ K
Sbjct: 338 GDFFDEMHPRPICIDK 353