BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0148.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003048459.1| putative transcriptional regulator [Methylot...   139   2e-31
ref|YP_001339667.1| AsnC family transcriptional regulator [Marin...   135   2e-30
ref|ZP_05105844.1| hypothetical protein MDMS009_3016 [Methylopha...   134   6e-30
ref|YP_004480453.1| regulatory protein MarR [Marinomonas posidon...   131   3e-29
ref|ZP_08506433.1| Regulatory protein MarR [Methyloversatilis un...   127   4e-28

>ref|YP_003048459.1| putative transcriptional regulator [Methylotenera mobilis JLW8]
 gb|ACT47932.1| putative transcriptional regulator [Methylotenera mobilis JLW8]
          Length = 130

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 85/104 (81%)

Query: 1   MLSEEYRYKILKRLGSQPETSQRELARDLGISLGKVNFCLNALIEKGLIKVNNFQANPNK 60
           ML++EY+YKILK + +  ETSQREL++ LGISLGK N+CL ALIEKG++KV+NF+ + NK
Sbjct: 9   MLTDEYKYKILKLVAANSETSQRELSKALGISLGKTNYCLQALIEKGMLKVSNFKNSKNK 68

Query: 61  RGYIYLLTPKGIEEKTLITMLFLKSKVREYESLSHEIEDLRSEV 104
             Y+YLLTPKGIEEK+ IT+ FLK+K++EYE L  EI+ L  EV
Sbjct: 69  LAYMYLLTPKGIEEKSAITLAFLKAKIKEYEMLDAEIKSLSQEV 112


>ref|YP_001339667.1| AsnC family transcriptional regulator [Marinomonas sp. MWYL1]
 gb|ABR69732.1| putative transcriptional regulator, AsnC family [Marinomonas sp.
           MWYL1]
          Length = 106

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/104 (65%), Positives = 80/104 (76%)

Query: 1   MLSEEYRYKILKRLGSQPETSQRELARDLGISLGKVNFCLNALIEKGLIKVNNFQANPNK 60
           ML++EYRYKILK L   P+ SQRELA+ L ISLGK NFCL ALIEKGLIK  NF+ + NK
Sbjct: 1   MLTDEYRYKILKELQQDPDISQRELAKRLDISLGKANFCLKALIEKGLIKAENFKNSTNK 60

Query: 61  RGYIYLLTPKGIEEKTLITMLFLKSKVREYESLSHEIEDLRSEV 104
            GY+YLLTPKGIEEK  +T  FL+ K++E+E L  EIE LR EV
Sbjct: 61  IGYLYLLTPKGIEEKVSLTQRFLQRKLKEHEVLEKEIEQLRQEV 104


>ref|ZP_05105844.1| hypothetical protein MDMS009_3016 [Methylophaga thiooxidans DMS010]
 gb|EEF78472.1| hypothetical protein MDMS009_3016 [Methylophaga thiooxydans DMS010]
          Length = 109

 Score =  134 bits (336), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 80/104 (76%)

Query: 1   MLSEEYRYKILKRLGSQPETSQRELARDLGISLGKVNFCLNALIEKGLIKVNNFQANPNK 60
           ML++EYRYKI K + + PE SQRELAR LGISLGK NFCL ALI+KGLIKVNNF+ + NK
Sbjct: 1   MLTDEYRYKIFKLVEANPEVSQRELARKLGISLGKTNFCLKALIDKGLIKVNNFRNSNNK 60

Query: 61  RGYIYLLTPKGIEEKTLITMLFLKSKVREYESLSHEIEDLRSEV 104
             Y Y LTP GI+EK  +T+ FLK K++EYE L  EIE++  EV
Sbjct: 61  LAYAYKLTPSGIDEKANVTIRFLKKKMKEYELLKQEIENISQEV 104


>ref|YP_004480453.1| regulatory protein MarR [Marinomonas posidonica IVIA-Po-181]
 gb|AEF53534.1| regulatory protein MarR [Marinomonas posidonica IVIA-Po-181]
          Length = 106

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 79/104 (75%)

Query: 1   MLSEEYRYKILKRLGSQPETSQRELARDLGISLGKVNFCLNALIEKGLIKVNNFQANPNK 60
           M  +EYR KILK L   P+ SQRELA+ LGISLGK NFCL ALIEKG IKV+NF+ + NK
Sbjct: 1   MSIDEYRLKILKELEQDPDISQRELAKRLGISLGKTNFCLKALIEKGSIKVDNFKNSANK 60

Query: 61  RGYIYLLTPKGIEEKTLITMLFLKSKVREYESLSHEIEDLRSEV 104
             Y+YLLTPKG+EEK ++T  FL+ K+ EYE+L  EIE LR EV
Sbjct: 61  TSYLYLLTPKGLEEKIILTQRFLQRKIVEYEALEQEIEQLRKEV 104


>ref|ZP_08506433.1| Regulatory protein MarR [Methyloversatilis universalis FAM5]
 gb|EGK70132.1| Regulatory protein MarR [Methyloversatilis universalis FAM5]
          Length = 121

 Score =  127 bits (320), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 83/107 (77%)

Query: 1   MLSEEYRYKILKRLGSQPETSQRELARDLGISLGKVNFCLNALIEKGLIKVNNFQANPNK 60
           ML E+ RY++LK L + PE SQR+LA+ LGIS+GKVNFCLNALIE+GL+K  NF+ + NK
Sbjct: 1   MLDEQTRYRLLKLLEANPELSQRQLAQALGISVGKVNFCLNALIERGLVKARNFRNSRNK 60

Query: 61  RGYIYLLTPKGIEEKTLITMLFLKSKVREYESLSHEIEDLRSEVERL 107
             Y+Y LTP G EEK  +++ +LK K++EYE+L  EIE+L++E  R+
Sbjct: 61  LAYMYFLTPAGFEEKARVSLRYLKQKLQEYETLRSEIEELQNEARRM 107