BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0138.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC transporte... 415 e-114 ref|ZP_02881377.1| binding-protein-dependent transport systems i... 366 2e-99 ref|YP_004157683.1| binding-protein-dependent transport systems ... 351 7e-95 ref|YP_002946631.1| binding-protein-dependent transport systems ... 349 3e-94 ref|YP_046150.1| ABC transporter permease [Acinetobacter sp. ADP... 346 2e-93 >ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61987.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/262 (83%), Positives = 237/262 (90%) Query: 2 TPLITNPGFLRVAAPLMIGVVLLLAWQLLCTVLEVPVYLVPTPLVIAKTLAADWGLLSDS 61 PL+ PGF RVAAPL+IG+ LLL WQ++CT+LEVP YLVPTP +I KTLAADW +L S Sbjct: 6 DPLVNRPGFWRVAAPLIIGIALLLMWQIVCTLLEVPPYLVPTPALIVKTLAADWSMLMAS 65 Query: 62 LLVTLKITFMAFVLSVLLGVAIAFVFVQSRFIEVSFFPYAIILQVTPIVAIAPLIIIWVK 121 LLVTLKITF+AF L+V+LGVAIAFVFVQSRFIE+S FPYAIILQVTPIVAIAPLIIIWVK Sbjct: 66 LLVTLKITFLAFALAVVLGVAIAFVFVQSRFIEISLFPYAIILQVTPIVAIAPLIIIWVK 125 Query: 122 EPTFALVICATIMALFPIISNTTLGLRSVNPGLLNLFKLNKASRWQTLRRLRIPSALPYF 181 + T AL +CATIMALFPIISNTTLGLRSVNPGLLNLF+LNKA+RWQTLRRLRIPSALPYF Sbjct: 126 DTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPYF 185 Query: 182 FGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALFLITVTGIA 241 FGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAAL LIT+TGI Sbjct: 186 FGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLITLTGIL 245 Query: 242 LFLAMMALSRVALAGWHESEMG 263 LF M ALSR LAGWHESEM Sbjct: 246 LFWLMSALSRAMLAGWHESEMA 267 >ref|ZP_02881377.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT12806.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 282 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 185/260 (71%), Positives = 217/260 (83%) Query: 3 PLITNPGFLRVAAPLMIGVVLLLAWQLLCTVLEVPVYLVPTPLVIAKTLAADWGLLSDSL 62 PL+ PG ++ AP ++GV++L W+ C V +VPVYLVP P IA+ L D +L +L Sbjct: 23 PLLQRPGAMKALAPWVVGVLMLSMWEAACAVFDVPVYLVPAPHDIARQLVVDAPMLFAAL 82 Query: 63 LVTLKITFMAFVLSVLLGVAIAFVFVQSRFIEVSFFPYAIILQVTPIVAIAPLIIIWVKE 122 TL+IT +AF L+ +LGVAIA VF QS IE SFFPYAI+LQVTPIVAIAPLIIIWVK+ Sbjct: 83 FATLRITLLAFALATVLGVAIALVFAQSPLIEASFFPYAILLQVTPIVAIAPLIIIWVKD 142 Query: 123 PTFALVICATIMALFPIISNTTLGLRSVNPGLLNLFKLNKASRWQTLRRLRIPSALPYFF 182 TFALVICAT++ALFPIISNT LGLRSVNPGL+NLF++N+A+RWQTL RLR+PSALPYFF Sbjct: 143 TTFALVICATLVALFPIISNTALGLRSVNPGLVNLFRINRATRWQTLTRLRVPSALPYFF 202 Query: 183 GGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALFLITVTGIAL 242 GGLRISSGL+LIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAAL LITVTG+ L Sbjct: 203 GGLRISSGLSLIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALMLITVTGVVL 262 Query: 243 FLAMMALSRVALAGWHESEM 262 F + +SR+ L GWHESE+ Sbjct: 263 FGITVWVSRLGLRGWHESEL 282 >ref|YP_004157683.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU39572.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 268 Score = 351 bits (900), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 172/262 (65%), Positives = 215/262 (82%) Query: 2 TPLITNPGFLRVAAPLMIGVVLLLAWQLLCTVLEVPVYLVPTPLVIAKTLAADWGLLSDS 61 TPL+ P RV P++IGVVL+ WQ + +E+P YLVP+P ++ +TL DW L ++ Sbjct: 5 TPLLNQPRVQRVLYPVLIGVVLVALWQWMVVAMELPSYLVPSPYLMMQTLVTDWAPLGNA 64 Query: 62 LLVTLKITFMAFVLSVLLGVAIAFVFVQSRFIEVSFFPYAIILQVTPIVAIAPLIIIWVK 121 LLVTLKIT ++F L+ + GV I+F+FVQS+ IE + FPYA++LQVTPIVA+APLIIIWVK Sbjct: 65 LLVTLKITVLSFALATVAGVLISFLFVQSKRIETALFPYAVLLQVTPIVAVAPLIIIWVK 124 Query: 122 EPTFALVICATIMALFPIISNTTLGLRSVNPGLLNLFKLNKASRWQTLRRLRIPSALPYF 181 P A+ +CA ++ALFPIISNTTLGLRS++P L + FKLN+A+RWQ L RLRIPSALPYF Sbjct: 125 NPVAAMTVCAALVALFPIISNTTLGLRSIDPDLQSYFKLNRATRWQQLVRLRIPSALPYF 184 Query: 182 FGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALFLITVTGIA 241 FGGLRISSGLALIGAVVAEFVAGTGG+G+GLAYQILQAGFQLNIPR+FAAL LI++TG+A Sbjct: 185 FGGLRISSGLALIGAVVAEFVAGTGGSGAGLAYQILQAGFQLNIPRMFAALLLISLTGVA 244 Query: 242 LFLAMMALSRVALAGWHESEMG 263 LF+ M L++VAL WH SE+ Sbjct: 245 LFVLMAWLTKVALGSWHASELS 266 >ref|YP_002946631.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS21365.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 267 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 171/261 (65%), Positives = 215/261 (82%) Query: 3 PLITNPGFLRVAAPLMIGVVLLLAWQLLCTVLEVPVYLVPTPLVIAKTLAADWGLLSDSL 62 PL++ P RV PL+IGVVL+ WQ + +E+P YLVP+P ++ +TL DW L +L Sbjct: 5 PLLSQPRVQRVLYPLLIGVVLVALWQWMVVAMELPPYLVPSPFLMVQTLVTDWAPLGSAL 64 Query: 63 LVTLKITFMAFVLSVLLGVAIAFVFVQSRFIEVSFFPYAIILQVTPIVAIAPLIIIWVKE 122 LVTLKIT ++F+L+ + GV I+F+FVQS+ IE + FPYA++LQVTPIVA+APLIIIWVK Sbjct: 65 LVTLKITLLSFLLATVAGVLISFLFVQSKRIETALFPYAVLLQVTPIVAVAPLIIIWVKN 124 Query: 123 PTFALVICATIMALFPIISNTTLGLRSVNPGLLNLFKLNKASRWQTLRRLRIPSALPYFF 182 P A+ +CA ++ALFPIISNTTLGLRS++P L + FKLN+A+RWQ L RLRIPSALPYFF Sbjct: 125 PVAAMTVCAALVALFPIISNTTLGLRSIDPDLQSYFKLNRATRWQQLVRLRIPSALPYFF 184 Query: 183 GGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALFLITVTGIAL 242 GGLRISSGLALIGAVVAEFVAGTGG+G+GLAYQILQAGFQLNIPR+FAAL LI++TG+AL Sbjct: 185 GGLRISSGLALIGAVVAEFVAGTGGSGAGLAYQILQAGFQLNIPRMFAALLLISLTGVAL 244 Query: 243 FLAMMALSRVALAGWHESEMG 263 F+ M L+++AL WH SE+ Sbjct: 245 FVLMAWLTKLALGSWHASELS 265 >ref|YP_046150.1| ABC transporter permease [Acinetobacter sp. ADP1] emb|CAG68328.1| putative permease protein (ABC superfamily, membrane) [Acinetobacter sp. ADP1] Length = 264 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 173/259 (66%), Positives = 210/259 (81%) Query: 3 PLITNPGFLRVAAPLMIGVVLLLAWQLLCTVLEVPVYLVPTPLVIAKTLAADWGLLSDSL 62 PL+ +P F RVAAPL +GV LLL WQ+ + VPVYL+P P I L + GLL SL Sbjct: 4 PLMNHPKFRRVAAPLALGVTLLLIWQISLQQMNVPVYLIPKPTDIGHALVSQSGLLFGSL 63 Query: 63 LVTLKITFMAFVLSVLLGVAIAFVFVQSRFIEVSFFPYAIILQVTPIVAIAPLIIIWVKE 122 VTLK+T +AF+ +V++G IAF+FVQSR IE F PYAI+ QVTPIVAIAPL+IIW++ Sbjct: 64 WVTLKVTLLAFICAVVIGTLIAFLFVQSRVIEACFMPYAILFQVTPIVAIAPLVIIWIQN 123 Query: 123 PTFALVICATIMALFPIISNTTLGLRSVNPGLLNLFKLNKASRWQTLRRLRIPSALPYFF 182 T ALV+CA ++A+FPI++NTTLGLRSVN GLLNLF++NKASRWQ L RLR+P+ALPYFF Sbjct: 124 TTLALVVCAMLVAIFPILTNTTLGLRSVNAGLLNLFQINKASRWQVLMRLRVPNALPYFF 183 Query: 183 GGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALFLITVTGIAL 242 GGLRISSGLALIGAVV+EFVAGTGGT +GLAYQILQAGFQL++P +FAALFLIT TG+ L Sbjct: 184 GGLRISSGLALIGAVVSEFVAGTGGTSAGLAYQILQAGFQLDLPLMFAALFLITCTGLVL 243 Query: 243 FLAMMALSRVALAGWHESE 261 F+ M LS++ L WHESE Sbjct: 244 FILMSMLSQMFLNKWHESE 262