BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0128.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum ser... 532 e-149 ref|YP_004751383.1| DNA polymerase I [Collimonas fungivorans Ter... 479 e-133 ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium ... 466 e-129 ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arse... 457 e-126 emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenico... 457 e-126 >ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 251/295 (85%), Positives = 270/295 (91%) Query: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYIACIFDA 60 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASY+AC+FDA Sbjct: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDA 60 Query: 61 KGKTFRDDLYAEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGVR 120 KGKTFRDDLY +YKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTL V+ Sbjct: 61 KGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQ 120 Query: 121 AAEEGLKTVVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIGKFGVPPERIVDYLSLIG 180 A GL T+VSTGDKDMAQLVN+HVTLVNTMSNE +D AGV KFGVPPERIVDYLSLIG Sbjct: 121 ATAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIG 180 Query: 181 DTVDNVPGVEKCGPKTAVKWLTQYDSLDGIIANADKITGVVGENLRKALPWLPQARVLVT 240 DTVDNVPGVEKCGPKTAVKWLT Y +LDG++ANADKI+GVVGENLR+AL WLPQ RVLVT Sbjct: 181 DTVDNVPGVEKCGPKTAVKWLTAYGTLDGVMANADKISGVVGENLRRALDWLPQGRVLVT 240 Query: 241 VKTDCDLSAHMGTILDSLTVQANDNDALREIFTRYNFRTWLRELDAAASAASADA 295 VKTDCDLSAHM +IL+SLT+Q D D L+E+FTRYNFRTWLREL A A ++ A Sbjct: 241 VKTDCDLSAHMSSILESLTMQPQDKDVLKELFTRYNFRTWLRELSDGAEAGASKA 295 >ref|YP_004751383.1| DNA polymerase I [Collimonas fungivorans Ter331] gb|AEK60560.1| DNA polymerase I [Collimonas fungivorans Ter331] Length = 1165 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/311 (73%), Positives = 263/311 (84%), Gaps = 2/311 (0%) Query: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYIACIFDA 60 MQKTLLLVDGSSYLYRAFHALPDMRNA PTGA+YGIINMLRRLR DYP++Y+AC+FDA Sbjct: 241 MQKTLLLVDGSSYLYRAFHALPDMRNAANEPTGAMYGIINMLRRLRLDYPSAYLACVFDA 300 Query: 61 KGKTFRDDLYAEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGVR 120 KGKTFRDD+YA+YKATR SMPEDL QI PIHAAVRA+GWPILMVEG+EADDVIGTL V+ Sbjct: 301 KGKTFRDDMYADYKATRASMPEDLVKQITPIHAAVRAMGWPILMVEGVEADDVIGTLTVQ 360 Query: 121 AAEEGLKTVVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIGKFGVPPERIVDYLSLIG 180 A G++ +VSTGDKD+AQLVND+VTL+NTMSNET+DRAGVI KFGVPPERIVDYL+LIG Sbjct: 361 AVTHGMQAIVSTGDKDLAQLVNDNVTLINTMSNETLDRAGVIAKFGVPPERIVDYLTLIG 420 Query: 181 DTVDNVPGVEKCGPKTAVKWLTQYDSLDGIIANADKITGVVGENLRKALPWLPQARVLVT 240 DTVDN+PGV K GPKTAVKWL QYD++D +IA+A I G VGENLR+ L WLP+A+ LVT Sbjct: 421 DTVDNIPGVAKVGPKTAVKWLAQYDTVDQVIAHAADIGGAVGENLRQVLDWLPKAKELVT 480 Query: 241 VKTDCDLSAHMGTILDSLTVQANDNDALREIFTRYNFRTWLRELDAAASAA-SADA-KPA 298 VKTDCDLSAHM +I +SL D + L E+FTRYNF+TWLREL A +AA +A+A KPA Sbjct: 481 VKTDCDLSAHMVSIPESLKAPEQDKETLIELFTRYNFKTWLRELSVAGNAAGTAEAGKPA 540 Query: 299 ATSPARGPXSP 309 A G P Sbjct: 541 AAGSNTGAAEP 551 >ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/328 (69%), Positives = 260/328 (79%), Gaps = 7/328 (2%) Query: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYIACIFDA 60 MQ TLLLVDGSSYLYRAFHALPD+RN EGAPTGALYGIINMLRRLR+D+PA+YIAC+FDA Sbjct: 1 MQNTLLLVDGSSYLYRAFHALPDLRNKEGAPTGALYGIINMLRRLRSDFPAAYIACVFDA 60 Query: 61 KGKTFRDDLYAEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGVR 120 KGKTFRDDLYAEYKA R SMPEDLA Q+EPIH AVRA+GWP++MVEG+EADDVIGTL V Sbjct: 61 KGKTFRDDLYAEYKAQRASMPEDLARQVEPIHEAVRAMGWPLIMVEGVEADDVIGTLAVD 120 Query: 121 AAEEGLKTVVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIGKFGVPPERIVDYLSLIG 180 A G+K V+STGDKD+AQLVND V L+NTMSNE +DR GV+ KFGVPPERIVDYL+LIG Sbjct: 121 AVRHGMKAVISTGDKDLAQLVNDDVMLINTMSNERLDRDGVLAKFGVPPERIVDYLTLIG 180 Query: 181 DTVDNVPGVEKCGPKTAVKWLTQYDSLDGIIANADKITGVVGENLRKALPWLPQARVLVT 240 DTVDNVPGV K GPKTAVKWLTQY +LDGI+ NA I G VGENLRKAL WLPQA+VL+T Sbjct: 181 DTVDNVPGVSKVGPKTAVKWLTQYGTLDGIVENAANIGGAVGENLRKALDWLPQAKVLIT 240 Query: 241 VKTDCDLSAHMGTILDSLTVQANDNDALREIFTRYNFRTWLRELDAAASAASADAKPAAT 300 VKTDCDL HM +I +SL + D + +++ R+ F+TWLRE A+AASA+ A Sbjct: 241 VKTDCDLVDHMVSIPESLMAKEQDPAKMIDLYARFGFKTWLRE----ATAASAEEVIATA 296 Query: 301 SPA---RGPXSPPMPPQVLRKSACSTPA 325 +PA G P P R T A Sbjct: 297 APADAQSGLFDAPAAPAEQRYDTILTEA 324 >ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/285 (75%), Positives = 245/285 (85%), Gaps = 1/285 (0%) Query: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYP-ASYIACIFD 59 M KTLLLVDGSSYLYRAFHA+PD+R EGAPTGA+YG+INMLRRLR DYP A Y+AC+FD Sbjct: 1 MNKTLLLVDGSSYLYRAFHAMPDLRGPEGAPTGAIYGMINMLRRLRKDYPDAEYMACVFD 60 Query: 60 AKGKTFRDDLYAEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGV 119 AKGKTFRDDLYAEYKA R SMP+DL QIEPIH AVRA+GWPILMV+GIEADDVI TL V Sbjct: 61 AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 120 Query: 120 RAAEEGLKTVVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIGKFGVPPERIVDYLSLI 179 A G+ TV+STGDKD+AQLVN+HVTLVNTMS E +DR GV+ KFGVPPERIVDYL+L+ Sbjct: 121 AAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLV 180 Query: 180 GDTVDNVPGVEKCGPKTAVKWLTQYDSLDGIIANADKITGVVGENLRKALPWLPQARVLV 239 GDTVDNVPGVEK GPKTAVKWLTQY +LDGI+A+A +I GVVGENLR+AL WLPQA+VL+ Sbjct: 181 GDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKGVVGENLRRALDWLPQAKVLI 240 Query: 240 TVKTDCDLSAHMGTILDSLTVQANDNDALREIFTRYNFRTWLREL 284 TVKTDCDLSAHM I +SLT + D +A+ F R F++WLREL Sbjct: 241 TVKTDCDLSAHMTEIPESLTQKTEDIEAMVAFFKRNGFKSWLREL 285 >emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/285 (75%), Positives = 245/285 (85%), Gaps = 1/285 (0%) Query: 1 MQKTLLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYP-ASYIACIFD 59 M KTLLLVDGSSYLYRAFHA+PD+R EGAPTGA+YG+INMLRRLR DYP A Y+AC+FD Sbjct: 7 MNKTLLLVDGSSYLYRAFHAMPDLRGPEGAPTGAIYGMINMLRRLRKDYPDAEYMACVFD 66 Query: 60 AKGKTFRDDLYAEYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLGV 119 AKGKTFRDDLYAEYKA R SMP+DL QIEPIH AVRA+GWPILMV+GIEADDVI TL V Sbjct: 67 AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 126 Query: 120 RAAEEGLKTVVSTGDKDMAQLVNDHVTLVNTMSNETMDRAGVIGKFGVPPERIVDYLSLI 179 A G+ TV+STGDKD+AQLVN+HVTLVNTMS E +DR GV+ KFGVPPERIVDYL+L+ Sbjct: 127 AAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLV 186 Query: 180 GDTVDNVPGVEKCGPKTAVKWLTQYDSLDGIIANADKITGVVGENLRKALPWLPQARVLV 239 GDTVDNVPGVEK GPKTAVKWLTQY +LDGI+A+A +I GVVGENLR+AL WLPQA+VL+ Sbjct: 187 GDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIKGVVGENLRRALDWLPQAKVLI 246 Query: 240 TVKTDCDLSAHMGTILDSLTVQANDNDALREIFTRYNFRTWLREL 284 TVKTDCDLSAHM I +SLT + D +A+ F R F++WLREL Sbjct: 247 TVKTDCDLSAHMTEIPESLTQKTEDIEAMVAFFKRNGFKSWLREL 291