BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0122.p (520 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773881.1| aerotaxis sensor receptor transmembrane prot... 756 0.0 ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transd... 635 e-180 ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular r... 595 e-168 ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer ... 580 e-163 ref|YP_003773941.1| aerotaxis sensor receptor transmembrane prot... 560 e-157 >ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61973.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/520 (71%), Positives = 435/520 (83%) Query: 1 MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60 MRMN+PVT E L DGK+IVSKTDLKGNITYVNPYFIE+SGF E EL+GAPQN++RHPD Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPAEAFADMWKTVKKGIPWTGLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSR 120 MPAEAFADMW T+K G PWTGLVKNR K GDHYWV AN+TP+RE GQ++GYMSVRTKP R Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 QDVAGAEKLYADLRKGKAKGIAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQ 180 VAGAEKLYA +R+G+AKGIA+ +G VVRTGL GW+ KL ++QLN+R+NLSM +L +Q Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180 Query: 181 LVAASVSFLTDHSMLNTGICIATMLITLYIWYALHSALVRPIQAALLATYAITGGDLSNR 240 L H + + A L+++ W AL +AL++P+ AL T+AITGGDLS R Sbjct: 181 LAVVVAGMAALHQWWISALAAAAALLSIVQWIALRNALIKPLHQALDITHAITGGDLSVR 240 Query: 241 AESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRTESQAS 300 E+ RHDE+GRLLR+LRQMN+NLTAIIGDVRSNVE+I ATREIA+GN+DLS RTE+QA+ Sbjct: 241 IETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAA 300 Query: 301 NLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEISASSKK 360 NLEETASSM +LA+TVRQNAD A+QAN LA +ASAIA++GGD VA TG+TM+EIS SS K Sbjct: 301 NLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSHK 360 Query: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKTL 420 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK L Sbjct: 361 IVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKEL 420 Query: 421 IEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQAVTDM 480 I+ SVEKVDIGNR V+ A +TM +IV SV+RV+GIM EI ATQQQS GI QVH+A+T M Sbjct: 421 IDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQM 480 Query: 481 DESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFKFQHQ 520 D STQQNA+LVE+AAAAAGSL+EQT RLLQAISVFKF + Sbjct: 481 DASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFNRR 520 >ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR89860.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] Length = 555 Score = 635 bits (1639), Expect = e-180, Method: Compositional matrix adjust. Identities = 334/523 (63%), Positives = 412/523 (78%), Gaps = 10/523 (1%) Query: 1 MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60 MR NLPVT+ EY LQDG S+VSKTD KG ITYVNP F+E SGF EEEL+G P N++RHPD Sbjct: 1 MRTNLPVTSNEYFLQDGSSLVSKTDTKGRITYVNPAFMEASGFQEEELIGKPHNLIRHPD 60 Query: 61 MPAEAFADMWKTVKKGIPWTGLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSR 120 MP EAF DMW+T+K+G+PWTGLVKNRRK GD YWV AN+TPVRE +++ +MSVR+KP+R Sbjct: 61 MPEEAFGDMWQTLKEGLPWTGLVKNRRKNGDFYWVNANVTPVRENNEIVAFMSVRSKPNR 120 Query: 121 QDVAGAEKLYADLRKGKAKGIAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQ 180 + V GA+ +YA + +AKG+AI +G VV TG+ G +A L I L ++I L M+TL+ L Sbjct: 121 EQVEGADAIYARFKADQAKGLAIRRGAVVSTGIFGKLAALRDIGLGSKIALGMMTLIAL- 179 Query: 181 LVAASVSFLTDHSMLNT-------GICIATMLITLYIWYALHSALVRPIQAALLATYAIT 233 A++ F+ ++ N G A + + L +W +LH+++VRP++ + T I Sbjct: 180 --IAALGFVATTAVENAARMGWYAGATAAGVCVALLLWASLHASVVRPLRTLIAETRVIA 237 Query: 234 GGDLSNRAESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSH 293 GGDL+ RHD++G+L +AL+QMN+NL +++GD+R+NV+SI ATREIA GNMDLS Sbjct: 238 GGDLTFDFAVDRHDDMGQLQQALQQMNVNLRSVMGDIRTNVDSITIATREIAAGNMDLSG 297 Query: 294 RTESQASNLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSE 353 RTESQAS+LEETASSMEQ A+TV+QNADSA QAN+L SAS +A KGG VV K G+TM E Sbjct: 298 RTESQASSLEETASSMEQFASTVKQNADSASQANELVQSASEVAGKGGAVVEKVGATMDE 357 Query: 354 ISASSKKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGA 413 ISAS+KKIVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVASEVRSLAQRSA A Sbjct: 358 ISASAKKIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRSASA 417 Query: 414 AKEIKTLIEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQV 473 AKEIK LI+DSVEKVD GNRLV DA TM +IV SV+RVTGIMNEITVA+++QS GI QV Sbjct: 418 AKEIKGLIDDSVEKVDAGNRLVSDAMTTMDDIVSSVQRVTGIMNEITVASREQSNGIDQV 477 Query: 474 HQAVTDMDESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFK 516 + A++ MDE TQQNAALVE+AAAAA SLEEQT L Q+ISVF+ Sbjct: 478 NLAISQMDEVTQQNAALVEEAAAAAASLEEQTFHLTQSISVFR 520 >ref|YP_001098794.1| aerotaxis sensor receptor, senses cellular redox state or proton motive force [Herminiimonas arsenicoxydans] emb|CAL60665.1| Aerotaxis receptor [Herminiimonas arsenicoxydans] Length = 553 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 314/520 (60%), Positives = 395/520 (75%), Gaps = 4/520 (0%) Query: 1 MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60 MR NLPVTNAE+ L+D S+VSKTD KG I+YVNP FIE SGF EEEL+G P N++RHPD Sbjct: 1 MRTNLPVTNAEFILRDEMSLVSKTDTKGRISYVNPAFIEASGFTEEELLGKPHNLIRHPD 60 Query: 61 MPAEAFADMWKTVKKGIPWTGLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSR 120 MP +AF DMW+T+++G+PWTG+VKNRRK GD YWV AN+TPVRE+ +++ YMSVR+KPSR Sbjct: 61 MPEQAFGDMWQTLQQGLPWTGMVKNRRKNGDFYWVNANVTPVREEQKIVAYMSVRSKPSR 120 Query: 121 QDVAGAEKLYADLRKGKAKGIAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQ 180 + V K+YA + G AKG+ I++G VV +GL G +A L I L RI +SM L+ L Sbjct: 121 EQVDATAKIYARFKAGTAKGLMIKRGEVVASGLFGKLASLKNIGLGARIGISMSALIALI 180 Query: 181 LV----AASVSFLTDHSMLNTGICIATMLITLYIWYALHSALVRPIQAALLATYAITGGD 236 + AA+ S I +I + W L+ +++RP+ + T I GGD Sbjct: 181 MTLGFAAATAVENAAWSYWYGAATIVGAVIVILTWAGLYFSIMRPLDRLISKTRVIAGGD 240 Query: 237 LSNRAESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRTE 296 + + RHD++G+L +AL+QMN+NL +++GD+R NV+SI AT EIA GNMDLS RTE Sbjct: 241 FTANFDVDRHDDMGQLQQALQQMNVNLRSVMGDIRQNVDSITIATHEIAEGNMDLSRRTE 300 Query: 297 SQASNLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEISA 356 +QAS+LEETASSM+Q A+TV+QNAD+A QAN+L SAS +A KGG VV K G+TM+EISA Sbjct: 301 AQASSLEETASSMQQFASTVKQNADNAQQANRLVLSASEVAGKGGAVVEKVGATMNEISA 360 Query: 357 SSKKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKE 416 S+K+IVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVA EVRSLAQRSA AA+E Sbjct: 361 SAKRIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRSANAARE 420 Query: 417 IKTLIEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQA 476 IK LI+DSV+KV +GNRLV DA TM IV SVK VT IMNEIT A+++QS GI QV+ A Sbjct: 421 IKHLIDDSVDKVGVGNRLVGDAMATMEGIVNSVKSVTDIMNEITQASREQSDGIEQVNLA 480 Query: 477 VTDMDESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFK 516 ++ MD+ TQQNAALVE+AAAAA SL+EQT L Q+IS+FK Sbjct: 481 ISHMDQVTQQNAALVEEAAAAAASLKEQTEHLSQSISIFK 520 >ref|YP_546041.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] gb|ABE50200.1| methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor [Methylobacillus flagellatus KT] Length = 598 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 296/518 (57%), Positives = 385/518 (74%), Gaps = 2/518 (0%) Query: 1 MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60 MR+N+PVTN EY LQDG+SI+S TDL+G ITY+N FIEVSGF E+EL+G+P N+VRHPD Sbjct: 1 MRINMPVTNNEYFLQDGQSILSTTDLQGKITYINQDFIEVSGFTEDELIGSPHNLVRHPD 60 Query: 61 MPAEAFADMWKTVKKGIPWTGLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSR 120 MP EAFADMW T+K G+PWTG+VKNRRK GD+YWVLAN TP+R+ G V+GYMSVR KPSR Sbjct: 61 MPPEAFADMWATLKAGLPWTGMVKNRRKNGDYYWVLANATPMRQNGNVVGYMSVRVKPSR 120 Query: 121 QDVAGAEKLYADLRKGKAKGIAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQ 180 Q V A ++YA LR+ K G+ + +G +++T V + ++ L T++ ++ I +L Sbjct: 121 QQVEQASQIYARLRENKHHGLKLHRGEILKTDFISRVRRAMQMTLKTQVAVTTIAILLAM 180 Query: 181 LVAASVSFL-TDHSMLNTGICIATMLITLYIWYALHSALVRPIQAALLATYAITGGDLSN 239 +V + +F D S + G +A M+ L + +L +++++P++ A A+ GDLS+ Sbjct: 181 VVVIAATFNGLDISFVVGGALVA-MVAMLSLAVSLSNSVIKPLREATDIANALASGDLSH 239 Query: 240 RAESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRTESQA 299 + + + DE G LLRAL QMN+N+ A+I D+R+N++ IN EIA GN DLS RTESQA Sbjct: 240 KFSASKTDETGMLLRALNQMNVNIVAMITDIRTNMQRINTGVNEIANGNNDLSARTESQA 299 Query: 300 SNLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEISASSK 359 S+LEETASSME+LA+TV+QNAD+A QANQL SAS++A +GG+V+ + M IS S+ Sbjct: 300 SSLEETASSMEELASTVKQNADNARQANQLVISASSVAARGGEVIGEVRDRMRLISESAN 359 Query: 360 KIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKT 419 KI DII +ID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSA AAKEIK Sbjct: 360 KISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAHRSAAAAKEIKG 419 Query: 420 LIEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQAVTD 479 LI DSVE+V+ G VD A TMTEIV SV+ VT IM EI+ A+ +QS GI QV+ AV D Sbjct: 420 LISDSVERVEAGVEFVDQAGTTMTEIVASVRNVTDIMAEISAASIEQSAGIDQVNHAVND 479 Query: 480 MDESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFKF 517 MDE TQ+NAALVE++AAAA +L + +L +A SVFK Sbjct: 480 MDEVTQRNAALVEESAAAADALRQDVLQLERAASVFKL 517 >ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62033.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 305/524 (58%), Positives = 388/524 (74%), Gaps = 5/524 (0%) Query: 1 MRMNLPVTNAEYELQDGKSIVSKTDLKGNITYVNPYFIEVSGFHEEELMGAPQNIVRHPD 60 MR NLP+T E L+DGKSIVSKTDL+GNI YVNPYFIE+SGF EEEL+GAPQNIVRHP+ Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPAEAFADMWKTVKKGIPWTGLVKNRRKCGDHYWVLANITPVREKGQVIGYMSVRTKPSR 120 MP EAFADMW T+K+G+PW GLVKNR K GD+YWV AN+TPVRE G+ +GYMSVRT+PSR Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 QDVAGAEKLYADLRKGKAKGIAIEQGNVVRTGLKGWVAKLGKIQLNTRINLSMITLLGLQ 180 + V AE Y G+A+G+ + +G VVRTGL GW+ L ++ + R+ +M L + Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 181 LVAASVSFLTDHSMLNTGICI-----ATMLITLYIWYALHSALVRPIQAALLATYAITGG 235 ++ +V+ S + + A L+ L W LH+++V P+Q A+ A + + GG Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 236 DLSNRAESGRHDEIGRLLRALRQMNINLTAIIGDVRSNVESINGATREIATGNMDLSHRT 295 DL + ++ ++G LL+AL+Q+N+NL AIIGDVR NVES+ +T EIA GNMDLS RT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 296 ESQASNLEETASSMEQLATTVRQNADSALQANQLAASASAIAVKGGDVVAKTGSTMSEIS 355 E+QAS LEETASS+E+ A TVRQNADSA A++ A SASAIA +GG V + G TM EI Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 356 ASSKKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAK 415 A+S KIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 416 EIKTLIEDSVEKVDIGNRLVDDARNTMTEIVESVKRVTGIMNEITVATQQQSVGITQVHQ 475 +IK LI+DS KV+ GN+LV + M E+ +V+ + M EITVA+ +QS GI Q++Q Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 476 AVTDMDESTQQNAALVEQAAAAAGSLEEQTGRLLQAISVFKFQH 519 AV +DE+TQQNAALVEQAAAAA +L +Q +L QA+SVFK + Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISY 524