BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0120.p (186 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773873.1| sugar ABC transporter periplasmic protein [H... 193 8e-48 ref|YP_004751757.1| ABC sugar transporter, periplasmic ligand bi... 189 2e-46 ref|YP_003683611.1| family 1 extracellular solute-binding protei... 188 3e-46 ref|YP_003897552.1| ABC transporter periplasmic protein [Halomon... 182 2e-44 ref|ZP_02884633.1| extracellular solute-binding protein family 1... 182 2e-44 >ref|YP_003773873.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61965.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 451 Score = 193 bits (491), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 92/154 (59%), Positives = 115/154 (74%), Gaps = 1/154 (0%) Query: 20 AILFSLLCPGFAGADAVSVVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLR 79 A + +L G A A+ V++ NIA+ NNPDM+ LQ+L+ FEK++PDI+L W M+E VLR Sbjct: 22 AAISTLFAAGLAQAEPVTL-NIASINNPDMIELQKLAPAFEKANPDIKLRWVTMEESVLR 80 Query: 80 ERVTTDITTSGGKFDLMTIGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKG 139 +R+TTDI T+ G+FDLMTIG P+WA++GWL PM LP+ YD DL+KPVR GLS G Sbjct: 81 QRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKPVREGLSVDG 140 Query: 140 KLYALPFYAESSMTYYRKDLFAQKKLVXAASPAF 173 KLYALPFYAESSMTYYRKDLF QKKL P + Sbjct: 141 KLYALPFYAESSMTYYRKDLFEQKKLTMPQRPTW 174 >ref|YP_004751757.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK60934.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 472 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 87/136 (63%), Positives = 105/136 (77%) Query: 38 VVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTSGGKFDLMT 97 VNIAT NNPDM+ LQ+LS+ FE ++PDI+L W V++E VLR+RVTTDI T G+FDLMT Sbjct: 60 TVNIATINNPDMIELQKLSTNFETANPDIKLRWVVLEENVLRQRVTTDIATGSGQFDLMT 119 Query: 98 IGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAESSMTYYRK 157 IG P+WA++GWL PM+ LP+ YD DL+K VR GL+ GKLYALPFYAESSMTYYRK Sbjct: 120 IGAYEAPIWAKKGWLAPMEGLPANYDEADLIKTVREGLTEGGKLYALPFYAESSMTYYRK 179 Query: 158 DLFAQKKLVXAASPAF 173 DLFA+K L P F Sbjct: 180 DLFAEKGLKMPEHPTF 195 >ref|YP_003683611.1| family 1 extracellular solute-binding protein [Meiothermus silvanus DSM 9946] gb|ADH62103.1| extracellular solute-binding protein family 1 [Meiothermus silvanus DSM 9946] Length = 435 Score = 188 bits (478), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 86/147 (58%), Positives = 110/147 (74%) Query: 30 FAGADAVSVVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTS 89 + A A + + IAT NNPDM+ +Q+LS FEK +PDI+LNW V+ E LR++VTTDI T+ Sbjct: 15 LSAALAQTTITIATVNNPDMVTMQKLSGEFEKKYPDIKLNWVVLPENELRQKVTTDIATN 74 Query: 90 GGKFDLMTIGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAE 149 G +D++TIG TP+W + GWL+ M LP+ YD++D+LKPVRAGLS +GKLYALPFYAE Sbjct: 75 AGSYDVLTIGTYETPIWGKNGWLVEMSGLPASYDLEDVLKPVRAGLSYQGKLYALPFYAE 134 Query: 150 SSMTYYRKDLFAQKKLVXAASPAFACA 176 SSM YYRKDLFA KKL A P + A Sbjct: 135 SSMLYYRKDLFAAKKLAVPAQPTWTQA 161 >ref|YP_003897552.1| ABC transporter periplasmic protein [Halomonas elongata DSM 2581] emb|CBV42367.1| ABC-type transport system periplasmic substrate-binding protein [Halomonas elongata DSM 2581] Length = 436 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 81/138 (58%), Positives = 104/138 (75%) Query: 37 SVVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTSGGKFDLM 96 + +AT NN DM+++Q L+ FEKSHPDI L+W V++E VLR+R+TTDI T+GG+FD+M Sbjct: 23 ETITVATVNNNDMVIMQGLTEAFEKSHPDITLDWVVLEENVLRQRMTTDIATNGGQFDVM 82 Query: 97 TIGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAESSMTYYR 156 TIG P+WAE+GWL P+DDLP Y +DLLKPVR GLS G L+ALPFYAESSM YYR Sbjct: 83 TIGSYEVPIWAERGWLEPLDDLPESYHAEDLLKPVRDGLSHDGTLHALPFYAESSMMYYR 142 Query: 157 KDLFAQKKLVXAASPAFA 174 KDLF Q + + P ++ Sbjct: 143 KDLFEQAGIEMSEQPTWS 160 >ref|ZP_02884633.1| extracellular solute-binding protein family 1 [Burkholderia graminis C4D1M] gb|EDT09798.1| extracellular solute-binding protein family 1 [Burkholderia graminis C4D1M] Length = 440 Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 83/144 (57%), Positives = 109/144 (75%) Query: 30 FAGADAVSVVNIATTNNPDMLVLQRLSSVFEKSHPDIRLNWHVMDEGVLRERVTTDITTS 89 FA + + + V IAT NNPDM+ L++LS FEK++PDI+LNW +++E VLR+R TTDITT Sbjct: 20 FALSASAATVTIATLNNPDMIELKKLSPEFEKANPDIKLNWVILEENVLRQRATTDITTG 79 Query: 90 GGKFDLMTIGLMSTPLWAEQGWLLPMDDLPSGYDVDDLLKPVRAGLSSKGKLYALPFYAE 149 G+FD+MTIG TP W ++GWL P+ +LP+ YD++D++K R GLSS G+LYALPFY E Sbjct: 80 SGQFDVMTIGAYETPQWGKRGWLTPLTNLPADYDLNDVVKTARDGLSSGGQLYALPFYVE 139 Query: 150 SSMTYYRKDLFAQKKLVXAASPAF 173 SSMTYYRKDLFA K L P + Sbjct: 140 SSMTYYRKDLFAAKGLKMPDQPTY 163