BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0112.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirill... 360 1e-97 ref|YP_004751756.1| hypothetical protein CFU_1101 [Collimonas fu... 324 8e-87 ref|YP_001856729.1| binding-protein-dependent transport systems ... 270 1e-70 ref|YP_004229368.1| mannitol ABC transporter permease [Burkholde... 269 3e-70 ref|YP_001896860.1| binding-protein-dependent transporters inner... 269 3e-70 >ref|YP_003773874.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61966.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 174/219 (79%), Positives = 194/219 (88%), Gaps = 2/219 (0%) Query: 2 SSEASASTPSTQKSRR--GKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTVYF 59 S++ S+++P Q + + +R ++RF PIRL+QTP+V +L WMIVPLAMT+YF Sbjct: 6 STQVSSTSPMMQSTSQPASRRQQTSPPRKERFNPIRLMQTPSVLILLAWMIVPLAMTIYF 65 Query: 60 SFNRYNLMSPDQTGFVGLENYQFLLEDPAFWPSIANTALLIGSVLCISVIGGTLLAVLFD 119 S NRYNLM+PDQTGFVGLENY FLL+DPAFWPSI NTALLIGSVL ISVIGGTLLAVLFD Sbjct: 66 SVNRYNLMAPDQTGFVGLENYAFLLQDPAFWPSIGNTALLIGSVLAISVIGGTLLAVLFD 125 Query: 120 QPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGMLAFVMRHLGMAPIDWLAEYPM 179 QPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYG+LA+VMRHLG+ PIDWLAEYPM Sbjct: 126 QPFRGRGIARLLVIGPFFVMPTVAALIWKNMIMHPVYGILAYVMRHLGLEPIDWLAEYPM 185 Query: 180 LSVIIIVSWQWIPFAFLILLTALQSLDGDQKEAAQLDGA 218 LSVIIIV+WQWIPFAFLILLTALQSLD DQKEAAQLDGA Sbjct: 186 LSVIIIVAWQWIPFAFLILLTALQSLDTDQKEAAQLDGA 224 >ref|YP_004751756.1| hypothetical protein CFU_1101 [Collimonas fungivorans Ter331] gb|AEK60933.1| hypothetical protein CFU_1101 [Collimonas fungivorans Ter331] Length = 309 Score = 324 bits (830), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 162/211 (76%), Positives = 178/211 (84%), Gaps = 3/211 (1%) Query: 8 STPSTQKSRRGKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLM 67 STPS Q + A +F P+RLLQTP+V LL LWMIVPLAMT+YFS RYNLM Sbjct: 2 STPSAQVA---NAAAPVRPNASKFKPVRLLQTPSVFLLLLWMIVPLAMTLYFSVIRYNLM 58 Query: 68 SPDQTGFVGLENYQFLLEDPAFWPSIANTALLIGSVLCISVIGGTLLAVLFDQPFRGRGI 127 P+ TGFVGL+NY FL DPAFWPSI NT LLIGSVL ISV+ GTLLAVLFDQPF GRGI Sbjct: 59 MPEATGFVGLDNYAFLFNDPAFWPSILNTLLLIGSVLVISVVSGTLLAVLFDQPFFGRGI 118 Query: 128 ARLLVIGPFFVMPTVAALIWKNMIMHPVYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVS 187 ARLLVIGPFFVMPTVAALIWKNMI+HPVYG+LA+VMR +G+ PIDWLAEYPMLSVI+IV+ Sbjct: 119 ARLLVIGPFFVMPTVAALIWKNMILHPVYGLLAWVMRLIGLEPIDWLAEYPMLSVIMIVA 178 Query: 188 WQWIPFAFLILLTALQSLDGDQKEAAQLDGA 218 WQWIPFAFLILLTALQSLD +QKEAAQLDGA Sbjct: 179 WQWIPFAFLILLTALQSLDLEQKEAAQLDGA 209 >ref|YP_001856729.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC69683.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 312 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 128/211 (60%), Positives = 166/211 (78%), Gaps = 10/211 (4%) Query: 8 STPSTQKSRRGKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLM 67 + P T+ R ++A R L +P+V +L LWM +PLAMT++FSF+RYNL+ Sbjct: 12 AEPQTEHEREERKAAHA----------RWLVSPSVGVLVLWMAIPLAMTIWFSFSRYNLL 61 Query: 68 SPDQTGFVGLENYQFLLEDPAFWPSIANTALLIGSVLCISVIGGTLLAVLFDQPFRGRGI 127 +PD+ GF GL+NY++L DPAF PSIA+T LI +VL I+V+GG LLAVLFD+ F G+GI Sbjct: 62 NPDEKGFTGLDNYKYLASDPAFGPSIAHTLELIVAVLVITVVGGVLLAVLFDRKFYGQGI 121 Query: 128 ARLLVIGPFFVMPTVAALIWKNMIMHPVYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVS 187 ARLL I PFFVMPTV+ALIWKNMI+HPVYG++A MR +G+AP+DW A+YP+ SVIIIV+ Sbjct: 122 ARLLAIAPFFVMPTVSALIWKNMILHPVYGLVADGMRAVGLAPVDWFADYPLTSVIIIVA 181 Query: 188 WQWIPFAFLILLTALQSLDGDQKEAAQLDGA 218 WQW+PFAFLIL TA+QSLD +QKEAA++DGA Sbjct: 182 WQWLPFAFLILFTAIQSLDQEQKEAAKIDGA 212 >ref|YP_004229368.1| mannitol ABC transporter permease [Burkholderia sp. CCGE1001] gb|ADX56308.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] Length = 311 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 128/211 (60%), Positives = 164/211 (77%), Gaps = 10/211 (4%) Query: 8 STPSTQKSRRGKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLM 67 + P T+K R ++A R L +P+VA+L LWM +PLAMT++FSF+RYNL+ Sbjct: 11 AHPQTEKEREIRKANSA----------RWLVSPSVAVLLLWMTIPLAMTIWFSFSRYNLL 60 Query: 68 SPDQTGFVGLENYQFLLEDPAFWPSIANTALLIGSVLCISVIGGTLLAVLFDQPFRGRGI 127 +PD GF G +NYQFL DP+F PSI +T LI SVL I+V+GG L+A+LFD+ F G+G+ Sbjct: 61 NPDLKGFAGFDNYQFLAGDPSFGPSIVHTLQLIVSVLVITVVGGVLMAILFDRKFYGQGV 120 Query: 128 ARLLVIGPFFVMPTVAALIWKNMIMHPVYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVS 187 ARLL I PFFVMPTV+ALIWKNMI+HPVYG++A MR LGM PIDW AEYP+ +VI+IV+ Sbjct: 121 ARLLAIAPFFVMPTVSALIWKNMILHPVYGLIAQGMRALGMQPIDWFAEYPLTAVIMIVA 180 Query: 188 WQWIPFAFLILLTALQSLDGDQKEAAQLDGA 218 WQW+PFAFLIL TA+QSLD +QKEAA++DGA Sbjct: 181 WQWLPFAFLILFTAIQSLDQEQKEAARIDGA 211 >ref|YP_001896860.1| binding-protein-dependent transporters inner membrane component [Burkholderia phytofirmans PsJN] gb|ACD17636.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phytofirmans PsJN] Length = 311 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/217 (59%), Positives = 167/217 (76%), Gaps = 11/217 (5%) Query: 8 STPSTQKSRRGKRAGGKHTGEKRFLPIRLLQTPAVALLFLWMIVPLAMTVYFSFNRYNLM 67 + P T+K R ++A R L TP+VA+L LWM +PLAMT++FSF+RYNL+ Sbjct: 11 AHPQTEKERETRKANSA----------RWLATPSVAVLVLWMAIPLAMTIWFSFSRYNLL 60 Query: 68 SPDQTGFVGLENYQFLLEDPAFWPSIANTALLIGSVLCISVIGGTLLAVLFDQPFRGRGI 127 +PD GF G +NY++L DP+F PSI +T LI SVL I+V+GG L+A+LFD+ F G+GI Sbjct: 61 NPDLKGFAGFDNYKYLASDPSFGPSIGHTLELIISVLVITVVGGVLMAILFDRKFYGQGI 120 Query: 128 ARLLVIGPFFVMPTVAALIWKNMIMHPVYGMLAFVMRHLGMAPIDWLAEYPMLSVIIIVS 187 ARLL I PFFVMPTV+ALIWKNMI+HPVYG++A MR +GM PIDW AEYP+ +VI+IV+ Sbjct: 121 ARLLAIAPFFVMPTVSALIWKNMILHPVYGLIAQGMRAMGMQPIDWFAEYPLTAVIMIVA 180 Query: 188 WQWIPFAFLILLTALQSLDGDQKEAAQLDGA-PGSAF 223 WQW+PFAFLIL TA+QSLD +QKEAA++DGA P S F Sbjct: 181 WQWLPFAFLILFTAIQSLDQEQKEAARIDGAGPFSMF 217