BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0111.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773873.1| sugar ABC transporter periplasmic protein [H... 775 0.0 ref|YP_004751757.1| ABC sugar transporter, periplasmic ligand bi... 690 0.0 ref|YP_004229369.1| sugar ABC transporter substrate-binding prot... 617 e-174 ref|YP_003908075.1| extracellular solute-binding protein family ... 615 e-174 ref|ZP_02884633.1| extracellular solute-binding protein family 1... 615 e-174 >ref|YP_003773873.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61965.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 451 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/431 (88%), Positives = 401/431 (93%) Query: 14 AAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLSPQFEKANPDIKLRWVTMEESVLR 73 AAAI+ L AGLA AEPVTLNIASINNPDMIELQKL+P FEKANPDIKLRWVTMEESVLR Sbjct: 21 AAAISTLFAAGLAQAEPVTLNIASINNPDMIELQKLAPAFEKANPDIKLRWVTMEESVLR 80 Query: 74 QRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKTVREGLTSDG 133 QRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIK VREGL+ DG Sbjct: 81 QRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKPVREGLSVDG 140 Query: 134 KLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAKGVYGICLRGRA 193 KLYALPFYAESSMTYYRKDLF QK L MP++PTW+EI KLAAQLHDPAKGVYGICLRGRA Sbjct: 141 KLYALPFYAESSMTYYRKDLFEQKKLTMPQRPTWDEIAKLAAQLHDPAKGVYGICLRGRA 200 Query: 194 GWGENMALVGTMVNAYGGRWFDEKWQPQLDTPEWKQAVNFYVDLMRKSGPPGASSNGFNE 253 GWGENMA++ TM NA+GGRWFDE+WQPQL +PEWK++V FYVDLMRK GPPGASSNGFNE Sbjct: 201 GWGENMAIITTMANAWGGRWFDEQWQPQLSSPEWKKSVAFYVDLMRKYGPPGASSNGFNE 260 Query: 254 NLVLFSGGKCGMWVDATVAAGMLYHGKDSKVSDKVAFAPAPMATTDKGSHWLWIWSLAVP 313 NLVLFS GKCGMWVDATVAAGMLYHGKDSKV+DK AFAP+PM TDKGSHWLWIWSLAVP Sbjct: 261 NLVLFSSGKCGMWVDATVAAGMLYHGKDSKVADKTAFAPSPMQVTDKGSHWLWIWSLAVP 320 Query: 314 KSSKSQDAARKFAAWATSKDYIKLVAKDSGWALVPPGTRTSTYASAEYKKASPFSDFVLD 373 KSSKSQDAA+KFAAWATSK+YI LVAKDSGWALVPPGTR STYASAEYKK SPFSDFVLD Sbjct: 321 KSSKSQDAAKKFAAWATSKEYINLVAKDSGWALVPPGTRNSTYASAEYKKVSPFSDFVLD 380 Query: 374 AIQKADANNPTVKPVPYTGIQFATIPEFQSIGTITGQAIAGALAGKGPADAALKTAQAQT 433 AIQ ADAN PTVKPVPYTG+QFATIPEFQSIGT+TGQAIAGALAGK +DAAL AQAQ Sbjct: 381 AIQTADANKPTVKPVPYTGVQFATIPEFQSIGTVTGQAIAGALAGKTTSDAALDAAQAQA 440 Query: 434 VRMMKQGRYIK 444 VRMM+QGRYIK Sbjct: 441 VRMMRQGRYIK 451 >ref|YP_004751757.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] gb|AEK60934.1| ABC sugar transporter, periplasmic ligand binding protein [Collimonas fungivorans Ter331] Length = 472 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/422 (77%), Positives = 368/422 (87%) Query: 23 AGLAFAEPVTLNIASINNPDMIELQKLSPQFEKANPDIKLRWVTMEESVLRQRLTTDIAT 82 G A+A PVT+NIA+INNPDMIELQKLS FE ANPDIKLRWV +EE+VLRQR+TTDIAT Sbjct: 51 CGSAWAAPVTVNIATINNPDMIELQKLSTNFETANPDIKLRWVVLEENVLRQRVTTDIAT 110 Query: 83 NSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKTVREGLTSDGKLYALPFYA 142 SGQFDLMTIGAYEAPIWAKKGWLAPM GLPA+YDEADLIKTVREGLT GKLYALPFYA Sbjct: 111 GSGQFDLMTIGAYEAPIWAKKGWLAPMEGLPANYDEADLIKTVREGLTEGGKLYALPFYA 170 Query: 143 ESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAKGVYGICLRGRAGWGENMALV 202 ESSMTYYRKDLFA+K LKMPE PT+++I A +L D G+ GICLRGRAGWGENMALV Sbjct: 171 ESSMTYYRKDLFAEKGLKMPEHPTFQDIAGFAEKLTDKQNGIAGICLRGRAGWGENMALV 230 Query: 203 GTMVNAYGGRWFDEKWQPQLDTPEWKQAVNFYVDLMRKSGPPGASSNGFNENLVLFSGGK 262 GTMVN +G RWFDEKWQPQL++PEWK AV YVDL+ K GP GA+SNGFNENLVLFS GK Sbjct: 231 GTMVNTFGARWFDEKWQPQLNSPEWKNAVTTYVDLLHKYGPQGATSNGFNENLVLFSSGK 290 Query: 263 CGMWVDATVAAGMLYHGKDSKVSDKVAFAPAPMATTDKGSHWLWIWSLAVPKSSKSQDAA 322 CGM +DATVAAGM+Y K+SKV KVAFAP+P+A T KGSHWLWIWSLA+PKSSKSQDAA Sbjct: 291 CGMGIDATVAAGMIYSSKESKVVGKVAFAPSPVAVTPKGSHWLWIWSLAIPKSSKSQDAA 350 Query: 323 RKFAAWATSKDYIKLVAKDSGWALVPPGTRTSTYASAEYKKASPFSDFVLDAIQKADANN 382 +KFAAWATSK+Y++LVAK+ GW LVPPGTR STYAS EYKKA+P+SDFVL+AIQ AD + Sbjct: 351 KKFAAWATSKEYVQLVAKEKGWGLVPPGTRMSTYASPEYKKAAPYSDFVLNAIQSADTKD 410 Query: 383 PTVKPVPYTGIQFATIPEFQSIGTITGQAIAGALAGKGPADAALKTAQAQTVRMMKQGRY 442 T++ VPYTGIQF TIPEFQS+GT+ GQAIAGALAGK DAAL+T+QAQ R+M+QGRY Sbjct: 411 ATLQKVPYTGIQFVTIPEFQSLGTVVGQAIAGALAGKSTVDAALQTSQAQADRVMRQGRY 470 Query: 443 IK 444 IK Sbjct: 471 IK 472 >ref|YP_004229369.1| sugar ABC transporter substrate-binding protein [Burkholderia sp. CCGE1001] gb|ADX56309.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1001] Length = 440 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 290/439 (66%), Positives = 347/439 (79%), Gaps = 1/439 (0%) Query: 6 PALPSARLAAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLSPQFEKANPDIKLRWV 65 PAL SA + L+ A T+ IA++NNPDMIEL+KLSP+FEKANPDIKL WV Sbjct: 3 PALKSALRVVSAGAAACFALS-ASAATVTIATLNNPDMIELKKLSPEFEKANPDIKLNWV 61 Query: 66 TMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKTV 125 +EE+VLRQR TTDI T SGQFD+MTIGAYE P W K+GWL P+T LPADYD D++KT Sbjct: 62 ILEENVLRQRATTDITTGSGQFDVMTIGAYETPQWGKRGWLTPLTNLPADYDLNDVVKTA 121 Query: 126 REGLTSDGKLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAKGVY 185 R+GL++ G+LYALPFY ESSMTYYRKDLFA K LKMP++PT+++I + A +L D A GVY Sbjct: 122 RDGLSAGGQLYALPFYVESSMTYYRKDLFAAKGLKMPDQPTYDQIAQFADKLTDKANGVY 181 Query: 186 GICLRGRAGWGENMALVGTMVNAYGGRWFDEKWQPQLDTPEWKQAVNFYVDLMRKSGPPG 245 GICLRG+AGWGENMA T+VN +GGRWFDEKW QL +PEWK+A+ FYVDL++K GPPG Sbjct: 182 GICLRGKAGWGENMAYGTTVVNTFGGRWFDEKWHAQLTSPEWKKAITFYVDLLKKDGPPG 241 Query: 246 ASSNGFNENLVLFSGGKCGMWVDATVAAGMLYHGKDSKVSDKVAFAPAPMATTDKGSHWL 305 ASSNGFNENL L S GKC MW+DATVAAGMLY+ + S+++DKV FA AP+ T KGSHWL Sbjct: 242 ASSNGFNENLTLMSSGKCAMWIDATVAAGMLYNKQQSQIADKVGFAAAPVQVTPKGSHWL 301 Query: 306 WIWSLAVPKSSKSQDAARKFAAWATSKDYIKLVAKDSGWALVPPGTRTSTYASAEYKKAS 365 W W+LA+PKSSK DAA+KF WATSK YI+LVAKD GWA VPPGTR STYA AEYK+A+ Sbjct: 302 WAWALAIPKSSKQTDAAKKFITWATSKQYIELVAKDEGWASVPPGTRQSTYARAEYKQAA 361 Query: 366 PFSDFVLDAIQKADANNPTVKPVPYTGIQFATIPEFQSIGTITGQAIAGALAGKGPADAA 425 PFSDFVL AI+ AD ++PT+KPVPYTG+QF IPEFQS GT+ GQ+I+GA+AG+ D A Sbjct: 362 PFSDFVLKAIETADPDHPTLKPVPYTGVQFVGIPEFQSFGTVVGQSISGAIAGQMSVDQA 421 Query: 426 LKTAQAQTVRMMKQGRYIK 444 L QA R +KQ Y K Sbjct: 422 LAAGQATADRAVKQAGYQK 440 >ref|YP_003908075.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1003] gb|ADN58784.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1003] Length = 440 Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust. Identities = 290/439 (66%), Positives = 348/439 (79%), Gaps = 1/439 (0%) Query: 6 PALPSARLAAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLSPQFEKANPDIKLRWV 65 PAL SA + L+ A T+ IA++NNPDMIEL+KLSP+FEKANPDIKL WV Sbjct: 3 PALKSALKMVSAGAAACFALS-ASAATVTIATLNNPDMIELKKLSPEFEKANPDIKLNWV 61 Query: 66 TMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKTV 125 +EE+VLRQR TTDI T SGQFD+MTIGAYE P W K+GWL P+T LPADYD D++KT Sbjct: 62 ILEENVLRQRATTDITTGSGQFDVMTIGAYETPQWGKRGWLTPLTNLPADYDLNDVVKTA 121 Query: 126 REGLTSDGKLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAKGVY 185 R+GL++ G+LYALPFY ESSMTYYRKDLFA K LKMP++PT+++I + A +L D A GVY Sbjct: 122 RDGLSAGGQLYALPFYVESSMTYYRKDLFAVKGLKMPDQPTYDQIAQFADKLTDKANGVY 181 Query: 186 GICLRGRAGWGENMALVGTMVNAYGGRWFDEKWQPQLDTPEWKQAVNFYVDLMRKSGPPG 245 GICLRG+AGWGENMA T+VN +GGRWFDEKW QL +PEWK+A+ FYVDL++K+GPPG Sbjct: 182 GICLRGKAGWGENMAYGTTVVNTFGGRWFDEKWHAQLTSPEWKKAITFYVDLLKKNGPPG 241 Query: 246 ASSNGFNENLVLFSGGKCGMWVDATVAAGMLYHGKDSKVSDKVAFAPAPMATTDKGSHWL 305 ASSNGFNENL L S GKC MW+DATVAAGMLY+ + S+++DKV FA AP+A T KGSHWL Sbjct: 242 ASSNGFNENLTLMSSGKCAMWIDATVAAGMLYNKQQSQIADKVGFAAAPVAVTPKGSHWL 301 Query: 306 WIWSLAVPKSSKSQDAARKFAAWATSKDYIKLVAKDSGWALVPPGTRTSTYASAEYKKAS 365 W W+LA+PKSSK DAA+KF WATSK YI+LVAKD GWA VPPGTR STYA AEYK+A+ Sbjct: 302 WAWALAIPKSSKQADAAKKFITWATSKQYIELVAKDEGWASVPPGTRQSTYARAEYKQAA 361 Query: 366 PFSDFVLDAIQKADANNPTVKPVPYTGIQFATIPEFQSIGTITGQAIAGALAGKGPADAA 425 PF DFVL AI+ AD ++PT+KPVPYTG+QF IPEFQS GT+ GQ+I+GA+AG+ D A Sbjct: 362 PFGDFVLKAIESADPDHPTLKPVPYTGVQFVGIPEFQSFGTVVGQSISGAIAGQMTVDQA 421 Query: 426 LKTAQAQTVRMMKQGRYIK 444 L QA R +KQ Y K Sbjct: 422 LAAGQATADRAVKQAGYQK 440 >ref|ZP_02884633.1| extracellular solute-binding protein family 1 [Burkholderia graminis C4D1M] gb|EDT09798.1| extracellular solute-binding protein family 1 [Burkholderia graminis C4D1M] Length = 440 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 291/439 (66%), Positives = 347/439 (79%), Gaps = 1/439 (0%) Query: 6 PALPSARLAAAIAILGTAGLAFAEPVTLNIASINNPDMIELQKLSPQFEKANPDIKLRWV 65 PAL SA + L+ A T+ IA++NNPDMIEL+KLSP+FEKANPDIKL WV Sbjct: 3 PALKSALKTMSAGAAACFALS-ASAATVTIATLNNPDMIELKKLSPEFEKANPDIKLNWV 61 Query: 66 TMEESVLRQRLTTDIATNSGQFDLMTIGAYEAPIWAKKGWLAPMTGLPADYDEADLIKTV 125 +EE+VLRQR TTDI T SGQFD+MTIGAYE P W K+GWL P+T LPADYD D++KT Sbjct: 62 ILEENVLRQRATTDITTGSGQFDVMTIGAYETPQWGKRGWLTPLTNLPADYDLNDVVKTA 121 Query: 126 REGLTSDGKLYALPFYAESSMTYYRKDLFAQKNLKMPEKPTWEEIGKLAAQLHDPAKGVY 185 R+GL+S G+LYALPFY ESSMTYYRKDLFA K LKMP++PT+++I + A +L D A GVY Sbjct: 122 RDGLSSGGQLYALPFYVESSMTYYRKDLFAAKGLKMPDQPTYDQIAQFADKLTDKANGVY 181 Query: 186 GICLRGRAGWGENMALVGTMVNAYGGRWFDEKWQPQLDTPEWKQAVNFYVDLMRKSGPPG 245 GICLRG+AGWGENMA T+VN +GGRWFDEKW QL +PEWK+A+ FYVDL++K+GPPG Sbjct: 182 GICLRGKAGWGENMAYGTTVVNTFGGRWFDEKWHAQLTSPEWKKAITFYVDLLKKNGPPG 241 Query: 246 ASSNGFNENLVLFSGGKCGMWVDATVAAGMLYHGKDSKVSDKVAFAPAPMATTDKGSHWL 305 ASSNGFNENL L S GKC MW+DATVAAGMLY+ + S+++DKV FA AP+A T KGSHWL Sbjct: 242 ASSNGFNENLTLMSSGKCAMWIDATVAAGMLYNKQQSQIADKVGFAAAPVAVTPKGSHWL 301 Query: 306 WIWSLAVPKSSKSQDAARKFAAWATSKDYIKLVAKDSGWALVPPGTRTSTYASAEYKKAS 365 W W+LA+PKSSK DAA+KF AWATSK YI+LVAKD GWA VPPGTR STYA EYK+A+ Sbjct: 302 WAWALAIPKSSKQADAAKKFIAWATSKQYIELVAKDEGWASVPPGTRQSTYARPEYKQAA 361 Query: 366 PFSDFVLDAIQKADANNPTVKPVPYTGIQFATIPEFQSIGTITGQAIAGALAGKGPADAA 425 PF DFVL AI+ AD +PT+KPVPYTG+QF IPEFQS GT+ GQ+I+GA+AG+ D A Sbjct: 362 PFGDFVLKAIETADPEHPTLKPVPYTGVQFVGIPEFQSFGTVVGQSISGAIAGQMTVDQA 421 Query: 426 LKTAQAQTVRMMKQGRYIK 444 L QA R +KQ Y K Sbjct: 422 LAAGQATADRAVKQAGYQK 440