BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0099.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004686950.1| LysR family transcriptional regulator [Cupri... 275 9e-72 ref|YP_297114.1| regulatory protein, LysR:LysR, substrate-bindin... 272 6e-71 ref|YP_727647.1| LysR family transcriptional regulator [Ralstoni... 271 8e-71 ref|YP_002006664.1| LysR family transcriptional regulator [Cupri... 268 8e-70 ref|ZP_01736987.1| regulatory protein, LysR:LysR, substrate-bind... 176 4e-42 >ref|YP_004686950.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI78469.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 312 Score = 275 bits (702), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 138/248 (55%), Positives = 180/248 (72%) Query: 1 MSSLPDFSSDRVHFDLTTLRLFEATAELGAVTKAAERIHLAPAAASRRIQEFEAQFGIAL 60 M+S P + R+HFDLTT++LF A A+ G++T+ AER+HLAPAAASRR+ E EAQ G++L Sbjct: 1 MTSSPPLRTTRLHFDLTTVQLFIAVADAGSITRGAERLHLAPAAASRRVLELEAQLGVSL 60 Query: 61 FDRLPHGMALTDAGRTLLAHVRSMIHSVVRMQDDANAFRQGNMGVVRVAACTSVVLQFLA 120 F+RLPHGMALT+AGR LLAH R + H+V RMQDDA +F G++GVVRVAA S V+QFL Sbjct: 61 FERLPHGMALTEAGRALLAHARGITHTVQRMQDDAASFVGGDLGVVRVAAPKSAVIQFLP 120 Query: 121 KDIRHCNALYPGIKIDLIELNSQGVLETVTRGVADIGIYESTLGGSVLPTTPYREDRLVL 180 DI+ C PG++IDL E+NS V +++ RG DIGIY+ +LG LPT PYR D LVL Sbjct: 121 FDIQRCAVACPGVRIDLQEMNSAEVQQSLRRGTVDIGIYDGSLGVIDLPTAPYRNDELVL 180 Query: 181 VTPRTHPLARYDSVTLDDILPHNVIGLSEGAAISLMLGRLANETNRMLNMRIMVRSFHSM 240 V R H LAR VT DD+L ++I LSE +AIS++L RLA E R+L MR+ V F SM Sbjct: 181 VVARGHALARRRKVTPDDVLDCDLIVLSESSAISIVLERLAEEAGRVLRMRMRVGGFDSM 240 Query: 241 AAMIGEEI 248 A++ + + Sbjct: 241 VALVAQNL 248 >ref|YP_297114.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gb|AAZ62270.1| regulatory protein, LysR:LysR, substrate-binding protein [Ralstonia eutropha JMP134] Length = 312 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 149/294 (50%), Positives = 196/294 (66%), Gaps = 12/294 (4%) Query: 1 MSSLPDFSSDRVHFDLTTLRLFEATAELGAVTKAAERIHLAPAAASRRIQEFEAQFGIAL 60 M+S S R+HFDLTT++LF A A+ G++T+ A+R+HLA AAASRRI E E+Q G++L Sbjct: 1 MTSTAPSRSSRLHFDLTTIQLFIAVADQGSITRGAQRLHLAAAAASRRILELESQLGVSL 60 Query: 61 FDRLPHGMALTDAGRTLLAHVRSMIHSVVRMQDDANAFRQGNMGVVRVAACTSVVLQFLA 120 F+RLPHGMALT+AGR LLAH R + H+V RMQDDA++F G++GVVRVAA S V+QFL Sbjct: 61 FERLPHGMALTEAGRALLAHARGITHTVQRMQDDASSFVGGDLGVVRVAAPKSAVIQFLP 120 Query: 121 KDIRHCNALYPGIKIDLIELNSQGVLETVTRGVADIGIYESTLGGSVLPTTPYREDRLVL 180 DI+ C A PG++IDL E+NSQ V +++ RG DIGIYE +LG +PT PYR DRLVL Sbjct: 121 FDIQRCAAACPGVRIDLQEMNSQEVQQSLRRGTVDIGIYEGSLGVVDMPTEPYRADRLVL 180 Query: 181 VTPRTHPLARYDSVTLDDILPHNVIGLSEGAAISLMLGRLANETNRMLNMRIMVRSFHSM 240 V R H LAR VT +D+L ++I L E +AIS+ L RLA E R+L MR+ V F S+ Sbjct: 181 VVARGHGLARRKQVTTEDVLDCDLIVLGESSAISIGLERLAEEAGRVLRMRMRVGGFDSI 240 Query: 241 AAMIGEEIXNR------RRSIAGRRR------AVSFGSHQRRVGHTPLCALPSA 282 AA++ + + R +AG R A + Q + H P AL SA Sbjct: 241 AALVAQNLGGGVMPEAIAREVAGGSRFARLPIAGDWAERQFVLCHRPHGALSSA 294 >ref|YP_727647.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94279.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 322 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 138/248 (55%), Positives = 180/248 (72%) Query: 1 MSSLPDFSSDRVHFDLTTLRLFEATAELGAVTKAAERIHLAPAAASRRIQEFEAQFGIAL 60 M+S + R+HFDLTT++LF A ++ G++T+ AER+HLAPAAASRRI E EAQ G++L Sbjct: 1 MTSTAPPRTPRLHFDLTTVQLFIAVSDFGSITRGAERLHLAPAAASRRILELEAQLGVSL 60 Query: 61 FDRLPHGMALTDAGRTLLAHVRSMIHSVVRMQDDANAFRQGNMGVVRVAACTSVVLQFLA 120 F+RLPHGMALT+AGR LLAH R + H+V RMQDDA +F G++GVVRVAA S V+QFL Sbjct: 61 FERLPHGMALTEAGRALLAHARGITHTVQRMQDDAASFVGGDLGVVRVAAPKSAVIQFLP 120 Query: 121 KDIRHCNALYPGIKIDLIELNSQGVLETVTRGVADIGIYESTLGGSVLPTTPYREDRLVL 180 DI+ C PG++IDL E+NS V +++ RG DIGIY+ +LG LPT PYR D LVL Sbjct: 121 FDIQRCATACPGVRIDLQEMNSAEVQQSLRRGTVDIGIYDGSLGVIDLPTAPYRNDELVL 180 Query: 181 VTPRTHPLARYDSVTLDDILPHNVIGLSEGAAISLMLGRLANETNRMLNMRIMVRSFHSM 240 V R H LAR VT DD+L ++I LSE +AIS++L RLA E R+L MR+ V F SM Sbjct: 181 VVARGHALARRRKVTPDDVLDCDLIVLSESSAISIVLERLAEEAGRVLRMRMRVGGFDSM 240 Query: 241 AAMIGEEI 248 AA++ + + Sbjct: 241 AALVAQNL 248 >ref|YP_002006664.1| LysR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] emb|CAQ70603.1| putative transcription regulator, LysR family [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 135/248 (54%), Positives = 179/248 (72%) Query: 1 MSSLPDFSSDRVHFDLTTLRLFEATAELGAVTKAAERIHLAPAAASRRIQEFEAQFGIAL 60 M+S + R+HFDLTT++LF A A+ G++T+ AER+HLAPAAASRRI E E+Q G++L Sbjct: 1 MTSPAHSRNSRLHFDLTTIQLFIAVADQGSITRGAERLHLAPAAASRRILELESQLGVSL 60 Query: 61 FDRLPHGMALTDAGRTLLAHVRSMIHSVVRMQDDANAFRQGNMGVVRVAACTSVVLQFLA 120 F+RLPHGMA T+AGR LLAH R + H+V RMQDDA +F G++GVVRVAA S V+QFL Sbjct: 61 FERLPHGMACTEAGRALLAHARGITHTVQRMQDDAASFVGGDLGVVRVAAPKSAVIQFLP 120 Query: 121 KDIRHCNALYPGIKIDLIELNSQGVLETVTRGVADIGIYESTLGGSVLPTTPYREDRLVL 180 DI+ C PG++IDL E+NSQ V +++ RG DIGIYE +LG LPT PYR DRLVL Sbjct: 121 FDIQRCATECPGVRIDLQEMNSQEVQQSLRRGTVDIGIYEGSLGVVDLPTAPYRSDRLVL 180 Query: 181 VTPRTHPLARYDSVTLDDILPHNVIGLSEGAAISLMLGRLANETNRMLNMRIMVRSFHSM 240 V R H LA+ VT +D+L ++I L E +AIS+ L RLA + R+L MR+ V F S+ Sbjct: 181 VVARGHALAKRKKVTTEDVLDCDLIVLGESSAISVGLERLAEDAGRVLRMRMRVSGFDSI 240 Query: 241 AAMIGEEI 248 AA++ + + Sbjct: 241 AALVAQNL 248 >ref|ZP_01736987.1| regulatory protein, LysR:LysR, substrate-binding [Marinobacter sp. ELB17] gb|EAZ99946.1| regulatory protein, LysR:LysR, substrate-binding [Marinobacter sp. ELB17] Length = 304 Score = 176 bits (446), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 97/231 (41%), Positives = 140/231 (60%) Query: 14 FDLTTLRLFEATAELGAVTKAAERIHLAPAAASRRIQEFEAQFGIALFDRLPHGMALTDA 73 FD TL+LF A A+ G +T AAER HLA AA S+RI + EA G LF R P G+ LT A Sbjct: 4 FDFVTLQLFIAVADEGRLTAAAEREHLALAAVSKRISDLEALVGTTLFYRRPRGVELTPA 63 Query: 74 GRTLLAHVRSMIHSVVRMQDDANAFRQGNMGVVRVAACTSVVLQFLAKDIRHCNALYPGI 133 G+ L H R ++ +V R+Q + + + +G G VR+ + TS ++ FL +D+ + LYP I Sbjct: 64 GQACLHHARRILDNVERLQAELSEYGEGVRGHVRIHSNTSAIIAFLPQDLSAFSRLYPEI 123 Query: 134 KIDLIELNSQGVLETVTRGVADIGIYESTLGGSVLPTTPYREDRLVLVTPRTHPLARYDS 193 KIDL E S ++ V G+ DIGI+ + L YR+DRL+L+TP HPLA +S Sbjct: 124 KIDLEERVSSEIITAVREGLTDIGIFAEHVAAPDLQQLSYRQDRLMLMTPIDHPLAGRES 183 Query: 194 VTLDDILPHNVIGLSEGAAISLMLGRLANETNRMLNMRIMVRSFHSMAAMI 244 + ++ L + IGL + A++ +L AN ++ L MRI VRSF ++ MI Sbjct: 184 IAFNEALAFDFIGLQQDASLQTLLNEQANLASKTLRMRIQVRSFDAICRMI 234