BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0092.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773860.1| thiamine biosynthesis protein [Herbaspirillu... 570 e-160 ref|YP_004751372.1| Thiamin biosynthesis protein ThiC [Collimona... 544 e-153 ref|YP_001352074.1| thiamine biosynthesis protein ThiC [Janthino... 522 e-146 ref|YP_001098690.1| thiamine biosynthesis protein ThiC [Herminii... 517 e-144 ref|ZP_04577483.1| thiamine biosynthesis protein thiC [Oxalobact... 513 e-143 >ref|YP_003773860.1| thiamine biosynthesis protein [Herbaspirillum seropedicae SmR1] gb|ADJ61952.1| thiamine biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 637 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 277/295 (93%), Positives = 286/295 (96%), Gaps = 4/295 (1%) Query: 47 MNANPKFLSATATVDEAAVQPLPNSRKIYVTGSRPDIRVPMREISQSDTPAMFGSEKNPP 106 MNANPKFLSATATVDEAA+QPLPNSRKIYVTGSRPDIRVPMREISQ+DTPAMFGSEKNPP Sbjct: 1 MNANPKFLSATATVDEAAIQPLPNSRKIYVTGSRPDIRVPMREISQADTPAMFGSEKNPP 60 Query: 107 IYVYDTSGPYTDPDVRIDIRNGLETPRLPWILERNDTEELDGPTSEYGRQRLNDPALAEL 166 IYVYDTSGPYTDP+V+IDIR GL TPRLPWILER+DTEEL GPTSEYG+QRLNDPALAEL Sbjct: 61 IYVYDTSGPYTDPEVKIDIRAGLSTPRLPWILERDDTEELPGPTSEYGQQRLNDPALAEL 120 Query: 167 RFNLHRKPRRAKAGGNLSGNVTQMHYARKGIITPEMEYIAIRENLRRQEYLEQLKASGPM 226 RFNLHRKPRRAKAG N VTQMHYAR+GIITPEME+IAIRENLRR+EYLEQLKASGPM Sbjct: 121 RFNLHRKPRRAKAGAN----VTQMHYARRGIITPEMEFIAIRENLRRKEYLEQLKASGPM 176 Query: 227 GNKLADLMGRQHPGQSFGASIPAMITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL 286 GNKLADLMGRQHPGQSFGASIPA ITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL Sbjct: 177 GNKLADLMGRQHPGQSFGASIPAEITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL 236 Query: 287 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 341 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP Sbjct: 237 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 291 >ref|YP_004751372.1| Thiamin biosynthesis protein ThiC [Collimonas fungivorans Ter331] gb|AEK60549.1| Thiamin biosynthesis protein ThiC [Collimonas fungivorans Ter331] Length = 640 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 260/298 (87%), Positives = 283/298 (94%), Gaps = 7/298 (2%) Query: 47 MNANPKFLSATATVDEAAVQPLPNSRKIYVTGSRPDIRVPMREISQSDTPAMFGSEKNPP 106 MNANPKFLSATATVDEAA+ PLPNSRKIYVTGSRPDIRVPMR+ISQSDTPA FG+EKNPP Sbjct: 1 MNANPKFLSATATVDEAAIHPLPNSRKIYVTGSRPDIRVPMRQISQSDTPASFGAEKNPP 60 Query: 107 IYVYDTSGPYTDPDVRIDIRNGLETPRLPWILERNDTEELDGPTSEYGRQRLNDPALAEL 166 IYVYDTSGPY+DPDV+IDIR+GL TPRLPWILER+DTEEL GP+SEYG +RLNDP LAEL Sbjct: 61 IYVYDTSGPYSDPDVKIDIRSGLATPRLPWILERDDTEELPGPSSEYGIERLNDPKLAEL 120 Query: 167 RFNLHRKPRRAKAGGNLSGNVTQMHYARKGIITPEMEYIAIRENLRRQEYLEQLKASGPM 226 RFNLHRKPRRAKAG NV+QMHYAR+GI+TPEME++AIREN+RR+EYLE+LKASGPM Sbjct: 121 RFNLHRKPRRAKAG----KNVSQMHYARQGIVTPEMEFVAIRENMRRKEYLEELKASGPM 176 Query: 227 GNKLADLMGRQHPGQSFGASIPA---MITPEFVRDEVARGRAIIPANINHPEVEPMIIGR 283 G+KLADLMGRQHPGQSFGAS+PA +TPEFVRDE+ARGRAIIPANINHPE+EPMIIGR Sbjct: 177 GSKLADLMGRQHPGQSFGASLPAAGDFVTPEFVRDEIARGRAIIPANINHPEIEPMIIGR 236 Query: 284 NFLVKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 341 NFLVKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGK+IHETREWIIRNSP Sbjct: 237 NFLVKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKHIHETREWIIRNSP 294 >ref|YP_001352074.1| thiamine biosynthesis protein ThiC [Janthinobacterium sp. Marseille] sp|A6SUX7.1|THIC_JANMA RecName: Full=Phosphomethylpyrimidine synthase; AltName: Full=Hydroxymethylpyrimidine phosphate synthase; Short=HMP-P synthase; Short=HMP-phosphate synthase; Short=HMPP synthase; AltName: Full=Thiamine biosynthesis protein thiC gb|ABR88562.1| thiamine biosynthesis protein [Janthinobacterium sp. Marseille] Length = 637 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 251/295 (85%), Positives = 271/295 (91%), Gaps = 4/295 (1%) Query: 47 MNANPKFLSATATVDEAAVQPLPNSRKIYVTGSRPDIRVPMREISQSDTPAMFGSEKNPP 106 MNANPKFLSATATVDEA++QPLPNSRKIY+ GSRPDIRVPMREI+QSDT A FG EKNPP Sbjct: 1 MNANPKFLSATATVDEASIQPLPNSRKIYIEGSRPDIRVPMREITQSDTAASFGFEKNPP 60 Query: 107 IYVYDTSGPYTDPDVRIDIRNGLETPRLPWILERNDTEELDGPTSEYGRQRLNDPALAEL 166 IYVYDTSGPYTDP +IDIR+GL+TPRLPWILERNDTEEL GPTSEYG +RLNDP LAEL Sbjct: 61 IYVYDTSGPYTDPAAKIDIRSGLDTPRLPWILERNDTEELPGPTSEYGIERLNDPKLAEL 120 Query: 167 RFNLHRKPRRAKAGGNLSGNVTQMHYARKGIITPEMEYIAIRENLRRQEYLEQLKASGPM 226 RFNLHRKPRRA AG N V+QMHYAR+GIITPEME++AIREN+ R+ YLE+LK SGP Sbjct: 121 RFNLHRKPRRALAGKN----VSQMHYARQGIITPEMEFVAIRENMNRRAYLEELKKSGPK 176 Query: 227 GNKLADLMGRQHPGQSFGASIPAMITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL 286 G KLA+LMGRQHPGQSFGA+IP IT EFVR E+ARGRAIIPANINHPE+EPMIIGRNFL Sbjct: 177 GEKLAELMGRQHPGQSFGAAIPQEITAEFVRSEIARGRAIIPANINHPEIEPMIIGRNFL 236 Query: 287 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 341 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGK+IHETREWIIRNSP Sbjct: 237 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKHIHETREWIIRNSP 291 >ref|YP_001098690.1| thiamine biosynthesis protein ThiC [Herminiimonas arsenicoxydans] sp|A4G224.1|THIC_HERAR RecName: Full=Phosphomethylpyrimidine synthase; AltName: Full=Hydroxymethylpyrimidine phosphate synthase; Short=HMP-P synthase; Short=HMP-phosphate synthase; Short=HMPP synthase; AltName: Full=Thiamine biosynthesis protein thiC emb|CAL60561.1| Thiamine biosynthesis protein [Herminiimonas arsenicoxydans] Length = 637 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/295 (84%), Positives = 269/295 (91%), Gaps = 4/295 (1%) Query: 47 MNANPKFLSATATVDEAAVQPLPNSRKIYVTGSRPDIRVPMREISQSDTPAMFGSEKNPP 106 MNANPKFLSATATVDEAA+QPLPNS KIY+ GSRPDIRVPMR+I+QSDT A FG EKNP Sbjct: 1 MNANPKFLSATATVDEAAIQPLPNSTKIYIQGSRPDIRVPMRKITQSDTAASFGFEKNPA 60 Query: 107 IYVYDTSGPYTDPDVRIDIRNGLETPRLPWILERNDTEELDGPTSEYGRQRLNDPALAEL 166 IYVYDTSGPYTDP+ +IDIR+GL+TPRLPWILER DTEEL GPTSEYG +RLNDP LAEL Sbjct: 61 IYVYDTSGPYTDPEAKIDIRSGLDTPRLPWILERQDTEELPGPTSEYGIERLNDPKLAEL 120 Query: 167 RFNLHRKPRRAKAGGNLSGNVTQMHYARKGIITPEMEYIAIRENLRRQEYLEQLKASGPM 226 RFNLHRKPRRA AG N V+QMHYAR+GIITPEME++AIREN+ R+ YLE+LK SGP Sbjct: 121 RFNLHRKPRRALAGKN----VSQMHYARQGIITPEMEFVAIRENMNRRAYLEELKQSGPK 176 Query: 227 GNKLADLMGRQHPGQSFGASIPAMITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL 286 G KLA+LMGRQHPGQSFGA+IP IT EFVR E+ARGRAIIPANINHPE+EPMIIGRNFL Sbjct: 177 GEKLAELMGRQHPGQSFGAAIPQEITAEFVRSEIARGRAIIPANINHPEIEPMIIGRNFL 236 Query: 287 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 341 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGK+IHETREWIIRNSP Sbjct: 237 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKHIHETREWIIRNSP 291 >ref|ZP_04577483.1| thiamine biosynthesis protein thiC [Oxalobacter formigenes HOxBLS] gb|EEO28445.1| thiamine biosynthesis protein thiC [Oxalobacter formigenes HOxBLS] Length = 637 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 246/295 (83%), Positives = 266/295 (90%), Gaps = 4/295 (1%) Query: 47 MNANPKFLSATATVDEAAVQPLPNSRKIYVTGSRPDIRVPMREISQSDTPAMFGSEKNPP 106 MNANPKFLSATA VDEAAVQP PNSRKIYV GSRPDIRVPMREI+ SDTP MFGSEKNPP Sbjct: 1 MNANPKFLSATAKVDEAAVQPFPNSRKIYVQGSRPDIRVPMREITLSDTPVMFGSEKNPP 60 Query: 107 IYVYDTSGPYTDPDVRIDIRNGLETPRLPWILERNDTEELDGPTSEYGRQRLNDPALAEL 166 IYVYDTSGPYTDPD +IDIR+GL R PWILER+DTEELDGPTS YGR+RLNDP+L EL Sbjct: 61 IYVYDTSGPYTDPDAKIDIRSGLPPIRTPWILERDDTEELDGPTSAYGRERLNDPSLDEL 120 Query: 167 RFNLHRKPRRAKAGGNLSGNVTQMHYARKGIITPEMEYIAIRENLRRQEYLEQLKASGPM 226 RFNL RKPRRAK G +TQM YAR+GI+TPEME++AIRENLRR+EYLE LKA+GP Sbjct: 121 RFNLTRKPRRAKKGAK----ITQMEYARRGIVTPEMEFVAIRENLRRKEYLESLKAAGPT 176 Query: 227 GNKLADLMGRQHPGQSFGASIPAMITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFL 286 G K+A +M RQHPGQSFGASIPA ITPEFVRDE+ARGRAIIPANINHPEVEPMIIGRNFL Sbjct: 177 GEKMAKMMMRQHPGQSFGASIPAEITPEFVRDEIARGRAIIPANINHPEVEPMIIGRNFL 236 Query: 287 VKINANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSP 341 VKINANIGNSA++S I EEVEKMTWAIRWGGDNVMDLSTGK+IHETREWI+RNSP Sbjct: 237 VKINANIGNSALSSGIAEEVEKMTWAIRWGGDNVMDLSTGKHIHETREWIVRNSP 291