BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0090.p         (227 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773858.1| signal peptide protein [Herbaspirillum serop...   199   3e-49
ref|YP_004751370.1| hypothetical protein CFU_0713 [Collimonas fu...   182   5e-44
ref|YP_521607.1| hypothetical protein Rfer_0322 [Rhodoferax ferr...   169   4e-40
ref|YP_546967.1| hypothetical protein Bpro_0103 [Polaromonas sp....   158   6e-37
ref|ZP_08276359.1| hypothetical protein IMCC9480_1962 [Oxalobact...   156   2e-36

>ref|YP_003773858.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61950.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 154

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 107/114 (93%)

Query: 23  WADGSPVGLWKNIDDATGKPKALIRITESDGELKGKIEKLFRPAEEEQNPKCEKCEGALK 82
           WADGSPVGLWK+IDDATGKPKALIRI+E++GEL GKIEKLFR  EE+QNP C+KCEG LK
Sbjct: 27  WADGSPVGLWKSIDDATGKPKALIRISENNGELSGKIEKLFRAPEEDQNPVCQKCEGELK 86

Query: 83  DQPIIGMTILSGLKKDGDEYNGGQILDPANGKLYKSKLTVVEDGKKLNVRGXGG 136
           D+PIIGMTILSGLKKDGDEYNGGQI+DPANGK+YKSKL+V++DG+KLNVRG  G
Sbjct: 87  DKPIIGMTILSGLKKDGDEYNGGQIIDPANGKVYKSKLSVIDDGQKLNVRGYVG 140


>ref|YP_004751370.1| hypothetical protein CFU_0713 [Collimonas fungivorans Ter331]
 gb|AEK60547.1| hypothetical protein CFU_0713 [Collimonas fungivorans Ter331]
          Length = 168

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 88/131 (67%), Positives = 107/131 (81%), Gaps = 4/131 (3%)

Query: 6   ILSTTLLALSALASATAWADGSPVGLWKNIDDATGKPKALIRITESDGELKGKIEKLFRP 65
           + ST LLA  A A  T+    S VGLWKNIDD TGKPKALIRI+E++GEL+GKIEKL R 
Sbjct: 28  VASTALLAFGAFAQDTS----SAVGLWKNIDDHTGKPKALIRISEANGELRGKIEKLLRD 83

Query: 66  AEEEQNPKCEKCEGALKDQPIIGMTILSGLKKDGDEYNGGQILDPANGKLYKSKLTVVED 125
             ++QNPKC KC+G LKDQPI+GMTI++G+KKDG+EYNGG ILDP NGK+YKSK+++ +D
Sbjct: 84  PSQDQNPKCVKCQGELKDQPILGMTIINGMKKDGNEYNGGTILDPDNGKVYKSKMSLADD 143

Query: 126 GKKLNVRGXGG 136
           GKKLNVRG  G
Sbjct: 144 GKKLNVRGYIG 154


>ref|YP_521607.1| hypothetical protein Rfer_0322 [Rhodoferax ferrireducens T118]
 gb|ABD68076.1| conserved hypothetical protein [Rhodoferax ferrireducens T118]
          Length = 155

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 105/141 (74%), Gaps = 5/141 (3%)

Query: 1   MKTRIILSTTLLALSALASA-----TAWADGSPVGLWKNIDDATGKPKALIRITESDGEL 55
           MK  I++    LAL  L++A      +  + SP GLWKNIDDATGKP+ +IRITES+G L
Sbjct: 1   MKEPIVMKLNTLALVTLSAACMALPASANEASPTGLWKNIDDATGKPRGMIRITESNGTL 60

Query: 56  KGKIEKLFRPAEEEQNPKCEKCEGALKDQPIIGMTILSGLKKDGDEYNGGQILDPANGKL 115
           +GKIEKLF    E+ NP C+KCEG LKD P+IG+TILSG+ K+GD+Y GGQILDP NGK 
Sbjct: 61  QGKIEKLFPAPNEDLNPTCKKCEGTLKDAPVIGLTILSGMSKEGDQYAGGQILDPDNGKT 120

Query: 116 YKSKLTVVEDGKKLNVRGXGG 136
           Y+S+L ++EDGKKL VRG  G
Sbjct: 121 YRSQLRLIEDGKKLEVRGYIG 141


>ref|YP_546967.1| hypothetical protein Bpro_0103 [Polaromonas sp. JS666]
 gb|ABE42069.1| hypothetical protein Bpro_0103 [Polaromonas sp. JS666]
          Length = 174

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 98/126 (77%)

Query: 11  LLALSALASATAWADGSPVGLWKNIDDATGKPKALIRITESDGELKGKIEKLFRPAEEEQ 70
           +LA + +A      D SP GLW+N+DD +GKP+ALIRITES+  L+G+IEK+F    E+ 
Sbjct: 35  ILAAALMAPPVRADDASPAGLWRNVDDVSGKPRALIRITESNETLQGRIEKVFPGPTEDP 94

Query: 71  NPKCEKCEGALKDQPIIGMTILSGLKKDGDEYNGGQILDPANGKLYKSKLTVVEDGKKLN 130
           NPKC+KC+GA KD P+IG+ IL+GL KDGDEY GGQILDP NGK+Y+SK+ + ++GKKL+
Sbjct: 95  NPKCDKCQGANKDAPVIGLVILNGLTKDGDEYGGGQILDPDNGKVYRSKVRLTDNGKKLS 154

Query: 131 VRGXGG 136
           VRG  G
Sbjct: 155 VRGYIG 160


>ref|ZP_08276359.1| hypothetical protein IMCC9480_1962 [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30171.1| hypothetical protein IMCC9480_1962 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 147

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/122 (60%), Positives = 100/122 (81%), Gaps = 1/122 (0%)

Query: 12  LALSALASATAWADGSPVGLWKNIDDATGKPKALIRITESDGELKGKIEKLFRPAEEEQN 71
           L +  L +  A A  SPVGLWK+IDD  G+ KALIRI++S+GELKGKIEK+F P+ ++++
Sbjct: 10  LTVGLLLATGALAQSSPVGLWKSIDDGNGQAKALIRISDSNGELKGKIEKIF-PSTDDKH 68

Query: 72  PKCEKCEGALKDQPIIGMTILSGLKKDGDEYNGGQILDPANGKLYKSKLTVVEDGKKLNV 131
           P C+KCEGA K QPI+GMTI++G++ DG E++GG ILDP NGK+YKSK+T+ ++GKKLNV
Sbjct: 69  PNCDKCEGANKGQPILGMTIINGMRADGSEFSGGTILDPNNGKVYKSKMTLSDEGKKLNV 128

Query: 132 RG 133
           RG
Sbjct: 129 RG 130