BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0086.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352001.1| Holliday junction DNA helicase RuvB [Janthin... 670 0.0 ref|YP_003773855.1| Holliday junction resolvase DNA helicase sub... 667 0.0 ref|YP_001098615.1| Holliday junction DNA helicase RuvB [Hermini... 666 0.0 ref|YP_004751367.1| Holliday junction DNA helicase RuvB [Collimo... 653 0.0 ref|ZP_08273366.1| Holliday junction DNA helicase RuvB [Oxalobac... 644 0.0 >ref|YP_001352001.1| Holliday junction DNA helicase RuvB [Janthinobacterium sp. Marseille] sp|A6SUQ4.1|RUVB_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB gb|ABR88318.1| holliday junction DNA helicase [Janthinobacterium sp. Marseille] Length = 352 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/351 (94%), Positives = 344/351 (98%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEK+RGQLEIFI+AARQR E Sbjct: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRHE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP EL +IVTRS+ LLNAPI E+GA EIAKRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPLELTKIVTRSSALLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKGNG+IT+AMADAALVMLDVDPVGFD+MDRKLLEAVLFKFNGGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGKITKAMADAALVMLDVDPVGFDLMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQG+LQRTPRGR+ATP+AY HFGVTAP+TGPNGDLWAG Sbjct: 301 RDTIEDVLEPYLIQQGFLQRTPRGRIATPVAYAHFGVTAPQTGPNGDLWAG 351 >ref|YP_003773855.1| Holliday junction resolvase DNA helicase subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61947.1| Holliday junction resolvase, DNA helicase subunit protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/351 (94%), Positives = 341/351 (97%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDFSEQRII+ATPASANEEAIERALRPKQLDEYVGQEKVR QLEIFISAAR+RGE Sbjct: 1 MSIQTDDFSEQRIISATPASANEEAIERALRPKQLDEYVGQEKVRAQLEIFISAARKRGE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 LDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 PLDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHR+SPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRMSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVE+GALEIA+RSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEDGALEIARRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKG GRIT+ MADAALVMLDVDPVGFD+MDRKLLEAVLFKF GGPVGLDNLAAAIGEE Sbjct: 241 AEVKGQGRITREMADAALVMLDVDPVGFDLMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQGYLQRTPRGR+AT AY HFGVTAPRT PNGDLW G Sbjct: 301 RDTIEDVLEPYLIQQGYLQRTPRGRIATGAAYQHFGVTAPRTSPNGDLWGG 351 >ref|YP_001098615.1| Holliday junction DNA helicase RuvB [Herminiimonas arsenicoxydans] sp|A4G1U9.1|RUVB_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB emb|CAL60486.1| Holliday junction DNA helicase ruvB [Herminiimonas arsenicoxydans] Length = 352 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/351 (94%), Positives = 342/351 (97%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDFSEQR+IAATPASANEEAIERALRPKQLDEYVGQEK+RGQLEIFI+AARQR E Sbjct: 1 MSIQTDDFSEQRVIAATPASANEEAIERALRPKQLDEYVGQEKIRGQLEIFITAARQRRE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP EL RIVTRS+ LLNAPI E+GA EIAKRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPLELTRIVTRSSSLLNAPIDEDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKGNG IT+AMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGDITKAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLWAG 351 RDTIEDVLEPYLIQQG+LQRTPRGR+ATP+AY HFGVTAP+TGPNG+LW G Sbjct: 301 RDTIEDVLEPYLIQQGFLQRTPRGRIATPVAYAHFGVTAPQTGPNGELWGG 351 >ref|YP_004751367.1| Holliday junction DNA helicase RuvB [Collimonas fungivorans Ter331] gb|AEK60544.1| Holliday junction DNA helicase RuvB [Collimonas fungivorans Ter331] Length = 352 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/349 (92%), Positives = 338/349 (96%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTDDF+EQRIIAATPAS NEEAIERALRPKQLDEYVGQEK+R QL+IFI+AARQR E Sbjct: 1 MSIQTDDFAEQRIIAATPASPNEEAIERALRPKQLDEYVGQEKIRDQLQIFITAARQRRE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYTP +L++IVTRSA LL API+++GA EIAKRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTPQQLSKIVTRSASLLGAPIMDDGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVKGNG IT+ MADAALVMLDVDPVGFD+MDRKLLEAVLFKF GGPVGLDNLAAAIGEE Sbjct: 241 AEVKGNGEITKPMADAALVMLDVDPVGFDIMDRKLLEAVLFKFGGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLW 349 RDTIEDVLEPYLIQQGYLQRTPRGR+ATPLAYTHFGV APRTGPNG+LW Sbjct: 301 RDTIEDVLEPYLIQQGYLQRTPRGRIATPLAYTHFGVAAPRTGPNGELW 349 >ref|ZP_08273366.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium IMCC9480] gb|EGF33170.1| Holliday junction DNA helicase RuvB [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/349 (91%), Positives = 333/349 (95%) Query: 1 MSIQTDDFSEQRIIAATPASANEEAIERALRPKQLDEYVGQEKVRGQLEIFISAARQRGE 60 MSIQTD+F+EQRI A TPAS NEEAIERALRPKQLDEYVGQEK+R QL IFI+AA+QR E Sbjct: 1 MSIQTDNFTEQRITAPTPASPNEEAIERALRPKQLDEYVGQEKIRDQLSIFITAAKQRRE 60 Query: 61 ALDHTLLFGPPGLGKTTMAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 ALDHTLLFGPPGLGKTT+AHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID Sbjct: 61 ALDHTLLFGPPGLGKTTLAHIIAREMGVNLRQTSGPVLERAGDLAALLTNLEANDVLFID 120 Query: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD Sbjct: 121 EIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSVRLDLQPFTLVGATTRAGMLTNPLRD 180 Query: 181 RFGIVARLEFYTPPELARIVTRSAGLLNAPIVEEGALEIAKRSRGTPRIANRLLRRVRDY 240 RFGIVARLEFYT ELARIVTRSA LLNAPI EGA EIAKRSRGTPRIANRLLRRVRDY Sbjct: 181 RFGIVARLEFYTATELARIVTRSASLLNAPIDPEGAFEIAKRSRGTPRIANRLLRRVRDY 240 Query: 241 AEVKGNGRITQAMADAALVMLDVDPVGFDVMDRKLLEAVLFKFNGGPVGLDNLAAAIGEE 300 AEVK NG IT+A ADAALVMLDVDPVGFD+MDRKLLEAVLFKF+GGPVGLDNLAAAIGEE Sbjct: 241 AEVKSNGDITKATADAALVMLDVDPVGFDLMDRKLLEAVLFKFSGGPVGLDNLAAAIGEE 300 Query: 301 RDTIEDVLEPYLIQQGYLQRTPRGRVATPLAYTHFGVTAPRTGPNGDLW 349 R+TIEDVLEPYLIQQGYLQRTPRGR+ATPLAYTHFGV APRTGPNG+LW Sbjct: 301 RETIEDVLEPYLIQQGYLQRTPRGRIATPLAYTHFGVAAPRTGPNGELW 349