BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0085.p         (200 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751366.1| Holliday junction DNA helicase RuvA [Collimo...   239   2e-61
ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthin...   232   2e-59
ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding ...   232   3e-59
sp|A4G1U8.2|RUVA_HERAR RecName: Full=Holliday junction ATP-depen...   231   5e-59
ref|YP_560370.1| Holliday junction DNA helicase motor protein [B...   228   3e-58

>ref|YP_004751366.1| Holliday junction DNA helicase RuvA [Collimonas fungivorans Ter331]
 gb|AEK60543.1| Holliday junction DNA helicase RuvA [Collimonas fungivorans Ter331]
          Length = 192

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/136 (93%), Positives = 133/136 (97%)

Query: 1   MIGRLSGILLEKNPPQLLVDCNGVGYEVGVPMSTFYNLPGLGEKVVLLTHLAIREDAHVL 60
           MIGRLSGILLEKNPPQLL+DCNGVGYEVGVPMSTFYNLPGLGEKV LLTHLAIREDAHVL
Sbjct: 1   MIGRLSGILLEKNPPQLLIDCNGVGYEVGVPMSTFYNLPGLGEKVALLTHLAIREDAHVL 60

Query: 61  FGFGSAEERNTFKELIKISGVGARTALSILSGMSVSDLAQAVTLQEAGRLTKVPGIGKKT 120
           +GFG+AEERN FK+LIKISGVGARTALSILSGMSV DLAQA+T+QEAGRLTKVPGIGKKT
Sbjct: 61  YGFGTAEERNVFKQLIKISGVGARTALSILSGMSVQDLAQAITMQEAGRLTKVPGIGKKT 120

Query: 121 AERLLLELKGKLGADL 136
           AERLLLELKGKLGADL
Sbjct: 121 AERLLLELKGKLGADL 136


>ref|YP_001352000.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
 sp|A6SUQ3.1|RUVA_JANMA RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gb|ABR88748.1| RuvA holliday junction DNA helicase [Janthinobacterium sp.
           Marseille]
          Length = 191

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 132/136 (97%)

Query: 1   MIGRLSGILLEKNPPQLLVDCNGVGYEVGVPMSTFYNLPGLGEKVVLLTHLAIREDAHVL 60
           MIGRLSG+LLEKNPPQLLVDCNGVGYEV VPMSTFYNLPGLG+KVVLLTHL +REDAH+L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60

Query: 61  FGFGSAEERNTFKELIKISGVGARTALSILSGMSVSDLAQAVTLQEAGRLTKVPGIGKKT 120
           FGFG+ EERN FK+L+KI+G+GARTALSILSGMSV+DLAQA+T+QEAGRLTK+PGIGKKT
Sbjct: 61  FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120

Query: 121 AERLLLELKGKLGADL 136
           AERLLLELKGKLGADL
Sbjct: 121 AERLLLELKGKLGADL 136


>ref|YP_003773854.1| Holliday junction DNA resolvase DNA-binding subunit [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61946.1| Holliday junction DNA resolvase, DNA-binding subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 125/136 (91%), Positives = 130/136 (95%)

Query: 1   MIGRLSGILLEKNPPQLLVDCNGVGYEVGVPMSTFYNLPGLGEKVVLLTHLAIREDAHVL 60
           MIGRLSGILLEK PP LLVDC GVGYEV VPMST+YNLP LGEKV LLTHLAIREDAH+L
Sbjct: 1   MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60

Query: 61  FGFGSAEERNTFKELIKISGVGARTALSILSGMSVSDLAQAVTLQEAGRLTKVPGIGKKT 120
           FGFG+AEERNTFKELIKISGVGARTALSILSGMSV+DLAQAVTLQEAGRLT+VPGIGKKT
Sbjct: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVADLAQAVTLQEAGRLTRVPGIGKKT 120

Query: 121 AERLLLELKGKLGADL 136
           AERLLLELKGKLGADL
Sbjct: 121 AERLLLELKGKLGADL 136


>sp|A4G1U8.2|RUVA_HERAR RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 emb|CAL60485.2| Holliday junction DNA helicase ruvA [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  231 bits (588), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 131/136 (96%)

Query: 1   MIGRLSGILLEKNPPQLLVDCNGVGYEVGVPMSTFYNLPGLGEKVVLLTHLAIREDAHVL 60
           MIGRLSG+LLEKNPPQLLVDCNGVGYEV VPMSTFYNLPGLGEKV LLTHL +REDAH+L
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGEKVALLTHLTVREDAHIL 60

Query: 61  FGFGSAEERNTFKELIKISGVGARTALSILSGMSVSDLAQAVTLQEAGRLTKVPGIGKKT 120
           FGFG+AEERN FK+L+KI+G+GARTALSILSGMSV+DL+ A+TLQEAGRLTK+PGIGKKT
Sbjct: 61  FGFGTAEERNVFKQLVKITGIGARTALSILSGMSVADLSNAITLQEAGRLTKIPGIGKKT 120

Query: 121 AERLLLELKGKLGADL 136
           AERLLLELKGKLGADL
Sbjct: 121 AERLLLELKGKLGADL 136


>ref|YP_560370.1| Holliday junction DNA helicase motor protein [Burkholderia
           xenovorans LB400]
 ref|ZP_06840187.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
 sp|Q13UC1.1|RUVA_BURXL RecName: Full=Holliday junction ATP-dependent DNA helicase ruvA
 gb|ABE32318.1| DNA recombination protein, RuvA [Burkholderia xenovorans LB400]
 gb|EFG72469.1| Holliday junction DNA helicase RuvA [Burkholderia sp. Ch1-1]
          Length = 193

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/136 (77%), Positives = 126/136 (92%)

Query: 1   MIGRLSGILLEKNPPQLLVDCNGVGYEVGVPMSTFYNLPGLGEKVVLLTHLAIREDAHVL 60
           MIGR++G+LLEKNPP LLVDCNGVGYEV VPMSTFYNLP  GE+VVLLT + +REDAH+L
Sbjct: 1   MIGRIAGVLLEKNPPHLLVDCNGVGYEVDVPMSTFYNLPSTGERVVLLTQMIVREDAHLL 60

Query: 61  FGFGSAEERNTFKELIKISGVGARTALSILSGMSVSDLAQAVTLQEAGRLTKVPGIGKKT 120
           +GFG+AEER+TF+EL+KISG+GAR AL++LSGMSV +LAQ VT+Q+A RLT+VPGIGKKT
Sbjct: 61  YGFGTAEERSTFRELLKISGIGARMALAVLSGMSVHELAQTVTMQDAARLTRVPGIGKKT 120

Query: 121 AERLLLELKGKLGADL 136
           AERLLLELKGK+GADL
Sbjct: 121 AERLLLELKGKIGADL 136