BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0083.p         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004754598.1| Crossover junction endodeoxyribonuclease ruv...   322   2e-86
ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas a...   309   1e-82
ref|YP_001351999.1| Holliday junction resolvase [Janthinobacteri...   309   1e-82
ref|YP_003773852.1| Holliday junction resolvasome, endonuclease ...   297   4e-79
ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC...   289   1e-76

>ref|YP_004754598.1| Crossover junction endodeoxyribonuclease ruvC [Collimonas
           fungivorans Ter331]
 gb|AEK63775.1| Crossover junction endodeoxyribonuclease ruvC [Collimonas
           fungivorans Ter331]
          Length = 180

 Score =  322 bits (824), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 161/180 (89%), Positives = 169/180 (93%)

Query: 1   MKIIGIDPGLRTTGFGVIHKQGSKLTYIASGTIKTPDGDLPQRLKVILASVGEVIQTYAP 60
           MKI+GIDPGLRTTGFGVI KQG+KL+YIASGTIKTPD DLPQRLKVILASV EVI+TYAP
Sbjct: 1   MKILGIDPGLRTTGFGVIDKQGNKLSYIASGTIKTPDADLPQRLKVILASVSEVIRTYAP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVQADLQVAEYTALQVKQAVAGHGKAQKQQ 120
           DC+AIEKVFVNVNPQSTLLLGQARGAAICALV ADL VAEYTALQ+KQAVAGHGKAQKQQ
Sbjct: 61  DCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLPVAEYTALQIKQAVAGHGKAQKQQ 120

Query: 121 VQDMVQRLLALPGLPGTDAADALGVAICHAHSGDILSALGGLAPGLAKKGLRMRGGRLVG 180
           VQDMVQRLL LPGLPGTDAADAL VAICHAHSGD L+ L  LAPGLAKKGLR+RGGRLVG
Sbjct: 121 VQDMVQRLLQLPGLPGTDAADALAVAICHAHSGDALAHLSALAPGLAKKGLRVRGGRLVG 180


>ref|YP_001098613.1| Holliday junction resolvase [Herminiimonas arsenicoxydans]
 sp|A4G1U7.1|RUVC_HERAR RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 emb|CAL60484.1| Crossover junction endodeoxyribonuclease ruvC (Holliday junction
           nuclease ruvC) (Holliday juction resolvase ruvC)
           [Herminiimonas arsenicoxydans]
          Length = 180

 Score =  309 bits (792), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 157/180 (87%), Positives = 162/180 (90%)

Query: 1   MKIIGIDPGLRTTGFGVIHKQGSKLTYIASGTIKTPDGDLPQRLKVILASVGEVIQTYAP 60
           MKI+GIDPGLRTTGFGVI KQG+KL+YIASGTIKTPD DLPQRLK IL SV EVI TY P
Sbjct: 1   MKILGIDPGLRTTGFGVIEKQGNKLSYIASGTIKTPDADLPQRLKTILVSVAEVIATYKP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVQADLQVAEYTALQVKQAVAGHGKAQKQQ 120
           DCAAIEKVFVNVNPQSTLLLGQARGAAICALV ADL VAEYTALQVKQAV G GKAQK Q
Sbjct: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVGADLFVAEYTALQVKQAVVGQGKAQKAQ 120

Query: 121 VQDMVQRLLALPGLPGTDAADALGVAICHAHSGDILSALGGLAPGLAKKGLRMRGGRLVG 180
           VQDMVQRLL L GLPGTDAADALGVAICHAHSG+ LS LG LAP LAKKGLR+RGGRLVG
Sbjct: 121 VQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEALSMLGALAPELAKKGLRVRGGRLVG 180


>ref|YP_001351999.1| Holliday junction resolvase [Janthinobacterium sp. Marseille]
 sp|A6SUQ2.1|RUVC_JANMA RecName: Full=Crossover junction endodeoxyribonuclease ruvC;
           AltName: Full=Holliday junction nuclease ruvC; AltName:
           Full=Holliday junction resolvase ruvC
 gb|ABR88445.1| crossover junction endodeoxyribonuclease [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score =  309 bits (791), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 156/180 (86%), Positives = 162/180 (90%)

Query: 1   MKIIGIDPGLRTTGFGVIHKQGSKLTYIASGTIKTPDGDLPQRLKVILASVGEVIQTYAP 60
           MKI+GIDPGLRTTGFGVI K G+KLTYIASGTIKTPD DLPQRLK IL+SV EVI TY P
Sbjct: 1   MKILGIDPGLRTTGFGVIEKHGNKLTYIASGTIKTPDADLPQRLKTILSSVSEVIATYHP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVQADLQVAEYTALQVKQAVAGHGKAQKQQ 120
           DCAAIEKVFVNVNPQSTLLLGQARGAAICALV ADL VAEYTALQVKQAV G GKAQK Q
Sbjct: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVHADLLVAEYTALQVKQAVVGQGKAQKAQ 120

Query: 121 VQDMVQRLLALPGLPGTDAADALGVAICHAHSGDILSALGGLAPGLAKKGLRMRGGRLVG 180
           VQDMVQRLL L GLPGTDAADALGVAICHAHSG+ LS LG LAP LA+KGLR+RGGRLVG
Sbjct: 121 VQDMVQRLLKLSGLPGTDAADALGVAICHAHSGEALSVLGALAPELARKGLRVRGGRLVG 180


>ref|YP_003773852.1| Holliday junction resolvasome, endonuclease subunit [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61944.1| Holliday junction resolvasome, endonuclease subunit protein
           [Herbaspirillum seropedicae SmR1]
          Length = 180

 Score =  297 bits (761), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 155/180 (86%), Positives = 166/180 (92%)

Query: 1   MKIIGIDPGLRTTGFGVIHKQGSKLTYIASGTIKTPDGDLPQRLKVILASVGEVIQTYAP 60
           MKI+GIDPGLRTTGFGVIHKQG+ L+YIASGTIKTPDGDLP RLKVILASVGEV+++Y P
Sbjct: 1   MKILGIDPGLRTTGFGVIHKQGNTLSYIASGTIKTPDGDLPSRLKVILASVGEVVKSYTP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVQADLQVAEYTALQVKQAVAGHGKAQKQQ 120
           DCAAIEKVFVNVNP STLLLGQARGAAICALV ADL VAEYTALQVKQAVAGHG+AQK Q
Sbjct: 61  DCAAIEKVFVNVNPHSTLLLGQARGAAICALVAADLAVAEYTALQVKQAVAGHGRAQKAQ 120

Query: 121 VQDMVQRLLALPGLPGTDAADALGVAICHAHSGDILSALGGLAPGLAKKGLRMRGGRLVG 180
           VQ+MV RLL LPGLPGTDAADALGVAICHAH G +LS LG LAP LA+KG+RMRGGRLVG
Sbjct: 121 VQEMVARLLKLPGLPGTDAADALGVAICHAHGGGVLSDLGALAPALARKGIRMRGGRLVG 180


>ref|ZP_08276356.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF30172.1| Crossover junction endodeoxyribonuclease RuvC [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 180

 Score =  289 bits (739), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/180 (81%), Positives = 156/180 (86%)

Query: 1   MKIIGIDPGLRTTGFGVIHKQGSKLTYIASGTIKTPDGDLPQRLKVILASVGEVIQTYAP 60
           M+I+GIDPGLR TGFGVI K G KL+YIASGTIKT D DLP RLK ILA V EV+ TY P
Sbjct: 1   MRILGIDPGLRITGFGVIEKHGHKLSYIASGTIKTLDIDLPARLKTILAGVSEVVATYRP 60

Query: 61  DCAAIEKVFVNVNPQSTLLLGQARGAAICALVQADLQVAEYTALQVKQAVAGHGKAQKQQ 120
           DC+AIEKVFVNVNPQSTLLLGQARGAAICALV ADL VAEYTALQVKQAV G GKAQK+Q
Sbjct: 61  DCSAIEKVFVNVNPQSTLLLGQARGAAICALVSADLLVAEYTALQVKQAVVGQGKAQKEQ 120

Query: 121 VQDMVQRLLALPGLPGTDAADALGVAICHAHSGDILSALGGLAPGLAKKGLRMRGGRLVG 180
           VQDMVQRLL L G P  DAADALGVAICHAH+ D+L+ LGGLAPGLAKKGLR+R GRLVG
Sbjct: 121 VQDMVQRLLMLSGKPTADAADALGVAICHAHNSDVLAILGGLAPGLAKKGLRVRKGRLVG 180