BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0082.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002233835.1| putative ligand-binding receptor [Burkholder... 241 2e-61 ref|YP_001777071.1| extracellular ligand-binding receptor [Burkh... 240 2e-61 ref|YP_372707.1| branched chain amino acid ABC transporter perip... 239 8e-61 ref|ZP_03569780.1| putative periplasmic substrate-binding protei... 238 1e-60 gb|EGD05583.1| ABC-type branched-chain amino acid transport syst... 237 3e-60 >ref|YP_002233835.1| putative ligand-binding receptor [Burkholderia cenocepacia J2315] emb|CAR55075.1| putative ligand-binding receptor [Burkholderia cenocepacia J2315] Length = 388 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 205/367 (55%), Gaps = 6/367 (1%) Query: 12 VFPVQALAQESK--VFIGFLAPLSGSNQARGVSMTNGAQLAIDELNKKAIRVNNLKLVFE 69 V V ALAQ + V IG APL+G + G + NGAQLAID+ N K + +V++ Sbjct: 18 VASVPALAQSAPQTVLIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKPVVYK 77 Query: 70 LVPQDDRFDANAGKLATDYLLKRNLAALVCHSSTVCIATAEQV-QAAGIPYISVGATNHK 128 LV DD+ D L+ +++ +V H +T C A +V + AGIP I+ +T H+ Sbjct: 78 LVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPASTGHQ 137 Query: 129 FTQLGYDNTFRMFGHSEQGGILFGQYVYGDLKVDRMAVIDDKTPSGMTMADQFSEGFTKA 188 +TQ GY FR+ GH + GG G Y LK R+AVIDD+T G +A+QF +G Sbjct: 138 YTQQGYATAFRIMGHDDAGGHFTGAYAVKTLKAKRIAVIDDRTSFGAGLAEQFIKGVQAN 197 Query: 189 GGLLLGRYSVSDKTSDFNQALADIKESRADAIFWGGTHLQAAKMIVSARRLGVKTRFLNA 248 GG ++ R V+DKT+DF+ L IK RAD +F+GG QAA + R+LGV L A Sbjct: 198 GGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGA 257 Query: 249 MNGMNNQNFLAQVNGAGN-IFTLESDQQRDKLPGWKNFEKNYVARFSSSYIDVSSLRAYD 307 G +Q FL+ G+ + LE D++PG K F+ Y ARF + I++ + AYD Sbjct: 258 -GGFVSQTFLSLAGKDGDGVTALEPGLSLDRMPGGKAFDTQYQARFHAP-IELHAPFAYD 315 Query: 308 AVQMAGEAIRLSNSVDPRKLIDTLHAEKFKGLSGVISFDRDGNLNDPVFTVYEAQGGGWK 367 A A + + + P KL+ + A G++G I+FD +GNL DP FT+Y+ +GG W Sbjct: 316 AAATLIAAAQKAGTTQPAKLVAAVRAIDRPGVTGRIAFDAEGNLKDPAFTIYQVRGGKWA 375 Query: 368 IVKVVKG 374 +V V+ G Sbjct: 376 VVDVLGG 382 >ref|YP_001777071.1| extracellular ligand-binding receptor [Burkholderia cenocepacia MC0-3] gb|ACA92581.1| Extracellular ligand-binding receptor [Burkholderia cenocepacia MC0-3] Length = 388 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 204/367 (55%), Gaps = 4/367 (1%) Query: 10 LSVFPVQALAQESKVFIGFLAPLSGSNQARGVSMTNGAQLAIDELNKKAIRVNNLKLVFE 69 ++ P A A V IG APL+G + G + NGAQLAID+ N K + +V++ Sbjct: 18 VATVPAFAQAAPQTVLIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKPVVYK 77 Query: 70 LVPQDDRFDANAGKLATDYLLKRNLAALVCHSSTVCIATAEQV-QAAGIPYISVGATNHK 128 LV DD+ D L+ +++ +V H +T C A +V + AGIP I+ +T H+ Sbjct: 78 LVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPASTGHQ 137 Query: 129 FTQLGYDNTFRMFGHSEQGGILFGQYVYGDLKVDRMAVIDDKTPSGMTMADQFSEGFTKA 188 +TQ GY FR+ GH + GG G Y LK R+AV+DD+T G +ADQF +G Sbjct: 138 YTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVLDDRTSFGAGLADQFIKGVQAN 197 Query: 189 GGLLLGRYSVSDKTSDFNQALADIKESRADAIFWGGTHLQAAKMIVSARRLGVKTRFLNA 248 GG ++ R V+DKT+DF+ L IK RAD +F+GG QAA + R+LGV L A Sbjct: 198 GGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGA 257 Query: 249 MNGMNNQNFLAQVNGAGN-IFTLESDQQRDKLPGWKNFEKNYVARFSSSYIDVSSLRAYD 307 G +Q FL+ G+ + LE D++PG K F+ Y ARF + I++ + AYD Sbjct: 258 -GGFVSQTFLSLAGKDGDGVTALEPGLPLDRMPGGKAFDTQYQARFHAP-IELHAPFAYD 315 Query: 308 AVQMAGEAIRLSNSVDPRKLIDTLHAEKFKGLSGVISFDRDGNLNDPVFTVYEAQGGGWK 367 A A + + + +P KL+ + A G++G ++FD +GNL DP FT+Y+ +GG W Sbjct: 316 AAATLIAAAQKAGTTEPAKLVAAVRAIDRPGVTGRVAFDAEGNLKDPAFTIYQVRGGKWA 375 Query: 368 IVKVVKG 374 +V V+ G Sbjct: 376 VVDVLGG 382 >ref|YP_372707.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia sp. 383] gb|ABB12063.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia sp. 383] Length = 388 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 203/364 (55%), Gaps = 6/364 (1%) Query: 15 VQALAQESK--VFIGFLAPLSGSNQARGVSMTNGAQLAIDELNKKAIRVNNLKLVFELVP 72 V A AQ + + IG APL+G + G + NGAQLAID+ N K + +V++LV Sbjct: 21 VPAFAQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKPVVYKLVA 80 Query: 73 QDDRFDANAGKLATDYLLKRNLAALVCHSSTVCIATAEQV-QAAGIPYISVGATNHKFTQ 131 DD+ D L+ +++ +V H +T C A +V + AGIP I+ +T H++TQ Sbjct: 81 ADDQSDPRTAVAVAQQLVDKHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPASTGHQYTQ 140 Query: 132 LGYDNTFRMFGHSEQGGILFGQYVYGDLKVDRMAVIDDKTPSGMTMADQFSEGFTKAGGL 191 GY FR+ GH + GG G Y LK R+AVIDD+T G +ADQF +G GG Sbjct: 141 QGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGSGLADQFIKGVQANGGA 200 Query: 192 LLGRYSVSDKTSDFNQALADIKESRADAIFWGGTHLQAAKMIVSARRLGVKTRFLNAMNG 251 ++ R V+DKT+DF+ L IK RAD +F+GG QAA + R+LGV L A G Sbjct: 201 IVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPISRRMRQLGVNAPLLGA-GG 259 Query: 252 MNNQNFLAQVNGAGN-IFTLESDQQRDKLPGWKNFEKNYVARFSSSYIDVSSLRAYDAVQ 310 +Q FL+ G+ + LE D++PG K F+ Y ARF + I++ + AYDA Sbjct: 260 FVSQTFLSLAGKDGDGVTALEPGLPLDRMPGGKAFDTQYQARFRAP-IELHAPFAYDAAA 318 Query: 311 MAGEAIRLSNSVDPRKLIDTLHAEKFKGLSGVISFDRDGNLNDPVFTVYEAQGGGWKIVK 370 A + + + P KL+ + A G++G I+FD +GNL DP FT+Y+ +GG W +V Sbjct: 319 TLIAAAQKAGTTQPAKLVAAVRAIDRPGVTGRIAFDAEGNLKDPAFTIYQVRGGKWTVVD 378 Query: 371 VVKG 374 V+ G Sbjct: 379 VLGG 382 >ref|ZP_03569780.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2M] ref|ZP_03576421.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2] gb|EEE09764.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2] gb|EEE15687.1| putative periplasmic substrate-binding protein [Burkholderia multivorans CGD2M] Length = 388 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 143/376 (38%), Positives = 208/376 (55%), Gaps = 10/376 (2%) Query: 7 GFGLSVFP----VQALAQESK--VFIGFLAPLSGSNQARGVSMTNGAQLAIDELNKKAIR 60 GF LS F V A AQ + + IG APL+G + G + NGAQLAID+ N K Sbjct: 9 GFALSAFALVASVTAGAQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPT 68 Query: 61 VNNLKLVFELVPQDDRFDANAGKLATDYLLKRNLAALVCHSSTVCIATAEQV-QAAGIPY 119 + +V++LV DD+ D L+ +++ +V H +T C A +V + AGIP Sbjct: 69 IGGKPVVYKLVAADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQ 128 Query: 120 ISVGATNHKFTQLGYDNTFRMFGHSEQGGILFGQYVYGDLKVDRMAVIDDKTPSGMTMAD 179 I+ +T H++TQ GY FR+ GH + GG G Y LK R+AVIDD+T G +AD Sbjct: 129 IAPASTGHQYTQQGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLAD 188 Query: 180 QFSEGFTKAGGLLLGRYSVSDKTSDFNQALADIKESRADAIFWGGTHLQAAKMIVSARRL 239 QF +G GG ++ R V+DKT+DF+ L IK RAD +F+GG QAA + R+L Sbjct: 189 QFIKGVQANGGTIVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQL 248 Query: 240 GVKTRFLNAMNGMNNQNFLAQVNGAGN-IFTLESDQQRDKLPGWKNFEKNYVARFSSSYI 298 GV L A G +Q FL+ G+ + LE +++PG K F+ Y ARF + I Sbjct: 249 GVNVPLLGA-GGFVSQTFLSLAGKDGDGVTALEPGLPLERMPGGKAFDAQYQARFRAP-I 306 Query: 299 DVSSLRAYDAVQMAGEAIRLSNSVDPRKLIDTLHAEKFKGLSGVISFDRDGNLNDPVFTV 358 ++ + AYDA A + + S P KL+ + G++G I+FD++GNL +P FT+ Sbjct: 307 ELHAPFAYDAAATLIAAAQKAGSTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTI 366 Query: 359 YEAQGGGWKIVKVVKG 374 Y+ +GG W +V V+ G Sbjct: 367 YQVRGGKWTVVDVLGG 382 >gb|EGD05583.1| ABC-type branched-chain amino acid transport system periplasmic component [Burkholderia sp. TJI49] Length = 388 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 203/364 (55%), Gaps = 6/364 (1%) Query: 15 VQALAQESK--VFIGFLAPLSGSNQARGVSMTNGAQLAIDELNKKAIRVNNLKLVFELVP 72 V A AQ + + IG APL+G + G + NGAQLAID+ N K + +V++LV Sbjct: 21 VPAFAQSAPQTILIGLAAPLTGPSARIGKDLQNGAQLAIDDANAKHPTIGGKPVVYKLVA 80 Query: 73 QDDRFDANAGKLATDYLLKRNLAALVCHSSTVCIATAEQV-QAAGIPYISVGATNHKFTQ 131 DD+ D L+ +++ +V H +T C A +V + AGIP I+ +T H++TQ Sbjct: 81 ADDQSDPRTAVAVAQQLVDQHVIGVVGHWNTGCSVPASRVYRDAGIPQIAPASTGHQYTQ 140 Query: 132 LGYDNTFRMFGHSEQGGILFGQYVYGDLKVDRMAVIDDKTPSGMTMADQFSEGFTKAGGL 191 GY FR+ GH + GG G Y LK R+AVIDD+T G +ADQF +G GG Sbjct: 141 QGYATAFRIMGHDDAGGNFTGAYAVKTLKAKRIAVIDDRTSFGAGLADQFIKGVQANGGT 200 Query: 192 LLGRYSVSDKTSDFNQALADIKESRADAIFWGGTHLQAAKMIVSARRLGVKTRFLNAMNG 251 ++ R V+DKT+DF+ L IK RAD +F+GG QAA + R+LGV L A G Sbjct: 201 IVDRQYVNDKTTDFSGVLTAIKGKRADLVFFGGLDAQAAPIARRMRQLGVNAPLLGA-GG 259 Query: 252 MNNQNFLAQVNGAGN-IFTLESDQQRDKLPGWKNFEKNYVARFSSSYIDVSSLRAYDAVQ 310 +Q FL+ G+ + LE D++PG K F+ Y ARF + I++ + AYDA Sbjct: 260 FVSQTFLSLAGKDGDGVPALEPGLPLDRMPGGKAFDAQYQARFRAP-IELHAPFAYDAAA 318 Query: 311 MAGEAIRLSNSVDPRKLIDTLHAEKFKGLSGVISFDRDGNLNDPVFTVYEAQGGGWKIVK 370 A + + + P KL+ + G++G I+FD++GNL +P FT+Y+ +GG W +V Sbjct: 319 TLIAAAQKAGTTQPAKLVAAVREIDRPGVTGEIAFDKEGNLKNPAFTIYQVRGGKWTVVD 378 Query: 371 VVKG 374 V+ G Sbjct: 379 VLGG 382