BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0079.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773847.1| factor-for-inversion-stimulation transcripti...   146   9e-34
ref|YP_004754600.1| macromolecule metabolism; basic proteins [Co...   137   5e-31
ref|YP_001351997.1| Fis family transcriptional regulator [Janthi...   132   2e-29
ref|YP_001098611.1| DNA-binding protein fis [Herminiimonas arsen...   131   3e-29
ref|ZP_08273354.1| DNA-binding protein Fis [Oxalobacteraceae bac...   130   6e-29

>ref|YP_003773847.1| factor-for-inversion-stimulation transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
 gb|ADJ61939.1| factor-for-inversion-stimulation transcription regulator protein
          [Herbaspirillum seropedicae SmR1]
          Length = 77

 Score =  146 bits (369), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MSKESIEDVV+KSL+KYF+DLGEQLP+NVYDMV+ TVEKP+FE VMARA+GNQSQAAEIL
Sbjct: 1  MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQHGLL
Sbjct: 61 GINRNTLRKKLQQHGLL 77


>ref|YP_004754600.1| macromolecule metabolism; basic proteins [Collimonas fungivorans
          Ter331]
 gb|AEK63777.1| macromolecule metabolism; basic proteins [Collimonas fungivorans
          Ter331]
          Length = 77

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 73/77 (94%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MSKESI+DVV++SL+KYFKDLGEQ PSNVYDMV+ TVEKP+ EAV+ARA+GNQS AAE+L
Sbjct: 1  MSKESIQDVVKQSLEKYFKDLGEQPPSNVYDMVISTVEKPVLEAVIARAEGNQSHAAEML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQHGLL
Sbjct: 61 GINRNTLRKKLQQHGLL 77


>ref|YP_001351997.1| Fis family transcriptional regulator [Janthinobacterium sp.
           Marseille]
 gb|ABR89168.1| transcriptional regulator, Fis family [Janthinobacterium sp.
           Marseille]
          Length = 126

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 72/77 (93%)

Query: 1   MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
           MSK++I++VV+KSL+KYFKDLGEQ+PSNVY+MVV TVEKPI EAVM RA+GNQS AA++L
Sbjct: 50  MSKDNIQEVVKKSLEKYFKDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 109

Query: 61  GINRNTLRKKLQQHGLL 77
           GINRNTLRKKLQQH LL
Sbjct: 110 GINRNTLRKKLQQHDLL 126


>ref|YP_001098611.1| DNA-binding protein fis [Herminiimonas arsenicoxydans]
 emb|CAL60482.1| DNA-binding protein fis (Factor-for-inversion stimulation
          protein) (HIN recombinational enhancer binding protein)
          [Herminiimonas arsenicoxydans]
          Length = 77

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 72/77 (93%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MSK++I+DVV+KSL+KYF+DLGEQ+PSNVY+MVV TVEKPI EAVM RA+GNQS AA++L
Sbjct: 1  MSKDNIQDVVKKSLEKYFRDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQQH +L
Sbjct: 61 GINRNTLRKKLQQHDML 77


>ref|ZP_08273354.1| DNA-binding protein Fis [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33186.1| DNA-binding protein Fis [Oxalobacteraceae bacterium IMCC9480]
          Length = 77

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 70/77 (90%)

Query: 1  MSKESIEDVVRKSLDKYFKDLGEQLPSNVYDMVVLTVEKPIFEAVMARADGNQSQAAEIL 60
          MSKESI++VV+KSL+KYF+DLGEQ P+NVYDMVV+TVEKPI E VMARA GNQS AAE+L
Sbjct: 1  MSKESIQEVVKKSLEKYFRDLGEQHPTNVYDMVVVTVEKPILEVVMARAAGNQSLAAEML 60

Query: 61 GINRNTLRKKLQQHGLL 77
          GINRNTLRKKLQ H LL
Sbjct: 61 GINRNTLRKKLQLHSLL 77