BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0077.p         (97 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like p...   191   2e-47
ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacter...   178   2e-43
ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacterac...   178   3e-43
ref|YP_725021.1| transfer RNA-dihydrouridine synthase [Ralstonia...   163   8e-39
ref|YP_001795847.1| tRNA-dihydrouridine synthase b [Cupriavidus ...   163   8e-39

>ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like protein
          [Herbaspirillum seropedicae SmR1]
 gb|ADJ61938.1| tRNA-dihydrouridine synthase protein or NifR3-like protein
          [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score =  191 bits (486), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/95 (93%), Positives = 93/95 (97%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          +NIGP+SLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRR NH
Sbjct: 1  MNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRINH 60

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
          DGEMEPKAVQIAGADP MLADCAK+NV+RGAQIID
Sbjct: 61 DGEMEPKAVQIAGADPVMLADCAKYNVERGAQIID 95


>ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
 gb|ABR89628.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
          Length = 338

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/95 (86%), Positives = 91/95 (95%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          +NIGP+SL NNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLW S+K++RRTNH
Sbjct: 1  MNIGPYSLPNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWASDKSTRRTNH 60

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
          DGE+EPKAVQIAGADP +LA+CAK NVDRGAQIID
Sbjct: 61 DGEVEPKAVQIAGADPVLLAECAKFNVDRGAQIID 95


>ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33185.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 348

 Score =  178 bits (451), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/95 (85%), Positives = 89/95 (93%)

Query: 1   VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
           V +GP+ L NNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLWQ+EKTSRR NH
Sbjct: 11  VKLGPYQLANNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWQTEKTSRRINH 70

Query: 61  DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
           DGEM P+AVQIAGADPAMLADCA+ NV+RGAQ+ID
Sbjct: 71  DGEMAPRAVQIAGADPAMLADCARFNVERGAQVID 105


>ref|YP_725021.1| transfer RNA-dihydrouridine synthase [Ralstonia eutropha H16]
 emb|CAJ91653.1| transfer RNA-dihydrouridine synthase [Ralstonia eutropha H16]
          Length = 353

 Score =  163 bits (413), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 86/95 (90%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          + IGPH LRNN+FVAPMAGVTDRPFRQLCKQLGAGYAVSEM AS+ +LW+SEKT RR NH
Sbjct: 1  MQIGPHQLRNNLFVAPMAGVTDRPFRQLCKQLGAGYAVSEMVASNAQLWKSEKTMRRANH 60

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
           GE+EP AVQIAGA+P+M+A+ A++NVDRGAQIID
Sbjct: 61 AGEVEPIAVQIAGAEPSMMAEAARYNVDRGAQIID 95


>ref|YP_001795847.1| tRNA-dihydrouridine synthase b [Cupriavidus taiwanensis LMG
          19424]
 emb|CAP63127.1| tRNA-dihydrouridine synthase B [Cupriavidus taiwanensis LMG
          19424]
          Length = 353

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 86/95 (90%)

Query: 1  VNIGPHSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWQSEKTSRRTNH 60
          + IGPH LRNN+FVAPMAGVTDRPFRQLCKQLGAGYAVSEM AS+ +LW+SEKT RR NH
Sbjct: 1  MQIGPHQLRNNLFVAPMAGVTDRPFRQLCKQLGAGYAVSEMVASNAQLWKSEKTMRRANH 60

Query: 61 DGEMEPKAVQIAGADPAMLADCAKHNVDRGAQIID 95
           GE+EP AVQIAGA+P+M+A+ A++NVDRGAQIID
Sbjct: 61 AGEVEPIAVQIAGAEPSMMAEAARYNVDRGAQIID 95