BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0075.p         (211 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacter...   225   3e-57
ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like p...   222   2e-56
ref|YP_004754601.1| tRNA-dihydrouridine synthase B [Collimonas f...   221   5e-56
ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacterac...   209   1e-52
ref|YP_001098610.1| tRNA-dihydrouridine synthase B [Herminiimona...   208   4e-52

>ref|YP_001351996.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
 gb|ABR89628.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]
          Length = 338

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 123/147 (83%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P   A C      R   IIDINMGCPVKKVCNSWCGSALLQ+E LV  IL+AVV +V+
Sbjct: 74  ADPVLLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAEILEAVVASVN 133

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGW+R +KNAL IA +AEQSGIAMLTLHGRTRADGYSG+AEYETI AVKAAV
Sbjct: 134 VPVTLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGDAEYETITAVKAAV 193

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
            IPVVANGDITTPE+A++VL VTGADA
Sbjct: 194 SIPVVANGDITTPEKARYVLDVTGADA 220


>ref|YP_003773846.1| tRNA-dihydrouridine synthase or NifR3-like protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61938.1| tRNA-dihydrouridine synthase protein or NifR3-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 125/147 (85%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P   A C      R   IIDINMGCPVKKVCNSWCGSALLQ+E+LV RILDAVV+AVD
Sbjct: 74  ADPVMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVARILDAVVSAVD 133

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGWNR NKNAL IAA AE +GIAMLTLHGRTRADGYSGEAEYETIAAVKAAV
Sbjct: 134 VPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 193

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
           KIPVVANGDITTPE+A+ VL +T ADA
Sbjct: 194 KIPVVANGDITTPEKARDVLLLTKADA 220


>ref|YP_004754601.1| tRNA-dihydrouridine synthase B [Collimonas fungivorans Ter331]
 gb|AEK63778.1| tRNA-dihydrouridine synthase B [Collimonas fungivorans Ter331]
          Length = 325

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 121/147 (82%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P   A C          IIDINMGCPVKKVCNSWCGSALLQ+E+LV +IL+AVV+AVD
Sbjct: 61  ADPLMLAECAKYNVDHGAQIIDINMGCPVKKVCNSWCGSALLQDEQLVAKILEAVVSAVD 120

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGW+R NKNAL IA +A+ SGIAMLTLHGRTRADGYSG+AEY+TIAAVKAAV
Sbjct: 121 VPVTLKFRTGWDRLNKNALNIARLAQASGIAMLTLHGRTRADGYSGDAEYQTIAAVKAAV 180

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
            IPVVANGDI TPE+A+ VL  T ADA
Sbjct: 181 TIPVVANGDIATPEKARQVLEYTKADA 207


>ref|ZP_08273353.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33185.1| tRNA-dihydrouridine synthase B [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 348

 Score =  209 bits (533), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/147 (76%), Positives = 127/147 (86%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P+  A C      R   +IDINMGCPVKKVCNSWCGSALLQ+E+LVG+ILDAVV AVD
Sbjct: 84  ADPAMLADCARFNVERGAQVIDINMGCPVKKVCNSWCGSALLQDERLVGQILDAVVAAVD 143

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGW+R++KNAL IA +A+ +GIAMLTLHGRTRADGY+G AEYETIAAVKAAV
Sbjct: 144 VPVTLKFRTGWDRQHKNALNIARLAQSAGIAMLTLHGRTRADGYNGAAEYETIAAVKAAV 203

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
            IPVVANGDITTPE+A+HVL VTGADA
Sbjct: 204 TIPVVANGDITTPEKARHVLAVTGADA 230


>ref|YP_001098610.1| tRNA-dihydrouridine synthase B [Herminiimonas arsenicoxydans]
 emb|CAL60481.1| tRNA-dihydrouridine synthase B [Herminiimonas arsenicoxydans]
          Length = 322

 Score =  208 bits (530), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 120/147 (81%)

Query: 39  STPSTPATCNARARARARXIIDINMGCPVKKVCNSWCGSALLQNEKLVGRILDAVVNAVD 98
           + P   A C      R   IIDINMGCPVKKVCNSWCGSALLQ+E LV  IL AVV AVD
Sbjct: 58  ADPLMLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESLVAEILQAVVAAVD 117

Query: 99  VPVTLKFRTGWNRENKNALAIAAMAEQSGIAMLTLHGRTRADGYSGEAEYETIAAVKAAV 158
           VPVTLKFRTGW+R +KNAL IA +AEQSGIAMLTLHGRTRADGYSGEAEYE IAAVKAAV
Sbjct: 118 VPVTLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGEAEYEMIAAVKAAV 177

Query: 159 KIPVVANGDITTPERAKHVLTVTGADA 185
            IPVVANGDITTPE+AK VL  TGADA
Sbjct: 178 SIPVVANGDITTPEKAKFVLEATGADA 204