BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0063.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773833.1| periplasmic protein TonB, links inner and ou... 429 e-118 ref|YP_001354653.1| hypothetical protein mma_2963 [Janthinobacte... 421 e-116 emb|CAL62871.2| Conserved hypothetical protein; putative TonB pr... 415 e-114 ref|ZP_08274959.1| TonB protein [Oxalobacteraceae bacterium IMCC... 392 e-107 ref|YP_004751443.1| TonB protein [Collimonas fungivorans Ter331]... 366 3e-99 >ref|YP_003773833.1| periplasmic protein TonB, links inner and outer membranes [Herbaspirillum seropedicae SmR1] gb|ADJ61925.1| periplasmic protein TonB, links inner and outer membranes, protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/289 (69%), Positives = 249/289 (86%), Gaps = 2/289 (0%) Query: 4 FAENRFLTIAIAGSVLVHAALLAVRFAAPDAFRLKPADPGLEVILVNAKHDKAPVKADAI 63 FA++R L++A+ S+LVH +LAV FAAPDAFRLKP+DP LEVILVNAKHDK PV A A+ Sbjct: 18 FAQHRLLSVALGVSLLVHGLMLAVHFAAPDAFRLKPSDPDLEVILVNAKHDKKPVNAQAL 77 Query: 64 AQANLDGGGNANQGRAKSPLPDMRKVETGDSVKAAQRKVAELEAQQQKILAQMNKNAPVV 123 AQANLDGGGNA GRAKSPLPDM++V++GDSVKAAQRKV ELE QQ++++AQ+ ++ V Sbjct: 78 AQANLDGGGNAEDGRAKSPLPDMQRVDSGDSVKAAQRKVVELEQQQRRMMAQLKQSQQHV 137 Query: 124 ATPEREPHKEVQPQLNAKDLLDTAKAVARMEAEVAKNIEEYNKRPKKTQITARTREAGYA 183 A+ E++ E PQLNA+D+++TA+A+ARMEAEVA++IE+YNKRPKKTQIT TRE GYA Sbjct: 138 ASAEQQKQTEA-PQLNARDMIETARAMARMEAEVARDIEQYNKRPKKTQITPSTREVGYA 196 Query: 184 MYYKALQEKIEKIGTLNFPQRDGKKLYGELVIYIPVYQDGSIYDKEGGVRVERSSGNLAL 243 YYK LQ+KIEK+GTLNFP +DGKKLYGEL+I IPV+QDGSIY+++GGV V+ SSGN AL Sbjct: 197 QYYKTLQDKIEKVGTLNFPTKDGKKLYGELLIVIPVFQDGSIYERDGGVVVKSSSGNAAL 256 Query: 244 DAAALTIVRRSAPFGRFPDNMRTTGGKDDIWEVITRFRFTREETLQTDL 292 D AA+ IVRRSAPFGRFPDNMR TGG+DD+WE+ITRFRFTR++ LQ L Sbjct: 257 DQAAVAIVRRSAPFGRFPDNMR-TGGRDDVWEIITRFRFTRDQGLQAQL 304 >ref|YP_001354653.1| hypothetical protein mma_2963 [Janthinobacterium sp. Marseille] gb|ABR89401.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 304 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/294 (69%), Positives = 245/294 (83%), Gaps = 5/294 (1%) Query: 1 VKFFAENRFLTIAIAGSVLVHAALLAVRFAAPDAFRLKPADPGLEVILVNAKHDKAPVKA 60 VK F +NRFL+ A+ SVL HAALLAV F P+AF+ KP DPGLEVILVNAKHDK P+KA Sbjct: 9 VKSFFQNRFLSAAVTISVLAHAALLAVHFTPPEAFKFKPTDPGLEVILVNAKHDKQPLKA 68 Query: 61 DAIAQANLDGGGNANQGRAKSPLPDMRKVETGDSVKAAQRKVAELEAQQQKILAQMNKNA 120 DA+AQANLDGGGNA+ GRAKSPLPD+RK E GDS KAA+RK+ ELE QQK+LAQM K Sbjct: 69 DALAQANLDGGGNADAGRAKSPLPDLRKSEDGDSAKAARRKIEELERHQQKLLAQMEKKT 128 Query: 121 PVVATP---EREPHKEVQPQLNAKDLLDTAKAVARMEAEVAKNIEEYNKRPKKTQITART 177 V TP + EP K++ PQ NA D+LD+AKA+ R EAE++++IEEYNKRPKKTQ+T T Sbjct: 129 -AVHTPKVSDVEPVKDLPPQRNAVDMLDSAKALLRREAEISRSIEEYNKRPKKTQVTPST 187 Query: 178 REAGYAMYYKALQEKIEKIGTLNFPQRDGKKLYGELVIYIPVYQDGSIYDKEGGVRVERS 237 RE GYA YYKALQ++IEK GTLNFPQ+DGKKLYG+LV+YIP++QDG+IY KEGG RVER+ Sbjct: 188 REVGYAAYYKALQDRIEKNGTLNFPQKDGKKLYGQLVVYIPIFQDGTIYMKEGGPRVERT 247 Query: 238 SGNLALDAAALTIVRRSAPFGRFPDNMRTTGGKDDIWEVITRFRFTREETLQTD 291 SGN ALD AAL IVRRSAPFG+FP+NMR+ GKDD+WE+ITRF FTR++ LQT+ Sbjct: 248 SGNPALDQAALNIVRRSAPFGKFPENMRSV-GKDDVWEIITRFNFTRDDALQTE 300 >emb|CAL62871.2| Conserved hypothetical protein; putative TonB protein [Herminiimonas arsenicoxydans] Length = 304 Score = 415 bits (1066), Expect = e-114, Method: Compositional matrix adjust. Identities = 198/293 (67%), Positives = 244/293 (83%), Gaps = 3/293 (1%) Query: 1 VKFFAENRFLTIAIAGSVLVHAALLAVRFAAPDAFRLKPADPGLEVILVNAKHDKAPVKA 60 VK +NR LTIA+A SVL HAALLAV F AP+AF+ +P DPGLEVILVNAKHDKAP+KA Sbjct: 9 VKSLLQNRTLTIAVAVSVLAHAALLAVHFTAPEAFKFQPTDPGLEVILVNAKHDKAPLKA 68 Query: 61 DAIAQANLDGGGNANQGRAKSPLPDMRKVETGDSVKAAQRKVAELEAQQQKILAQMNKNA 120 DA+AQANLDGGGNA+ GRAKSPLPD RK E GDS KAA+RKV ELE QQK+L+Q+ + Sbjct: 69 DALAQANLDGGGNADAGRAKSPLPDFRKSEDGDSAKAARRKVEELERHQQKLLSQLARKT 128 Query: 121 PVVA--TPEREPHKEVQPQLNAKDLLDTAKAVARMEAEVAKNIEEYNKRPKKTQITARTR 178 P A + EP K++ PQ NA D+LD+AKA+ R EAE+A+++E+YNKRPKKTQ+T TR Sbjct: 129 PFRAPQVTDVEPVKDLPPQRNATDMLDSAKALLRREAEIARSVEDYNKRPKKTQVTPSTR 188 Query: 179 EAGYAMYYKALQEKIEKIGTLNFPQRDGKKLYGELVIYIPVYQDGSIYDKEGGVRVERSS 238 E GYA YYKA Q++IEK GTLNFPQ+DGKKLYG+L+++IP++QDG+IY K+GG RVERSS Sbjct: 189 EVGYAAYYKAFQDRIEKYGTLNFPQKDGKKLYGDLILFIPIFQDGTIYMKDGGPRVERSS 248 Query: 239 GNLALDAAALTIVRRSAPFGRFPDNMRTTGGKDDIWEVITRFRFTREETLQTD 291 GN ALD AAL IVRRS PFG+FP++MR++ GKDD+WE+ITRF FTR++ LQT+ Sbjct: 249 GNPALDQAALNIVRRSVPFGKFPEHMRSS-GKDDVWEIITRFSFTRDDALQTE 300 >ref|ZP_08274959.1| TonB protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF31565.1| TonB protein [Oxalobacteraceae bacterium IMCC9480] Length = 297 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 191/297 (64%), Positives = 238/297 (80%), Gaps = 2/297 (0%) Query: 1 VKFFAENRFLTIAIAGSVLVHAALLAVRFAAPDAFRLKPADPGLEVILVNAKHDKAPVKA 60 +K N LTIAIA SVLVH ALLAVRF +P+ FR KP DPGLEVILVNAKH P+KA Sbjct: 1 MKLTLRNPTLTIAIAVSVLVHGALLAVRFTSPELFRQKPDDPGLEVILVNAKHKAPPLKA 60 Query: 61 DAIAQANLDGGGNANQGRAKSPLPDMRKVETGDSVKAAQRKVAELEAQQQKILAQMNKNA 120 + +AQANLDGGGNA GR KSPLPD+R+ + GDSV+A +R+V++LE Q+K+L+Q+NK Sbjct: 61 EVLAQANLDGGGNAEAGRTKSPLPDLRRTQDGDSVQATRRRVSDLEQAQKKLLSQINKPT 120 Query: 121 PVVATPEREPHKEVQPQL-NAKDLLDTAKAVARMEAEVAKNIEEYNKRPKKTQITARTRE 179 P+V + + QP L + D D+ K++AR EAE+A+NIEEYNKRPKKTQIT TRE Sbjct: 121 PLVIPSFSDLARLKQPPLPDGNDDQDSTKSIARREAEIARNIEEYNKRPKKTQITPNTRE 180 Query: 180 AGYAMYYKALQEKIEKIGTLNFPQRDGKKLYGELVIYIPVYQDGSIYDKEGGVRVERSSG 239 GYAMYYK+LQ++IEK GT+NFPQ+DGKKLYGELV+YIPVYQDG+IY+++GG RVERSSG Sbjct: 181 VGYAMYYKSLQDRIEKRGTVNFPQQDGKKLYGELVLYIPVYQDGTIYERDGGPRVERSSG 240 Query: 240 NLALDAAALTIVRRSAPFGRFPDNMRTTGGKDDIWEVITRFRFTREETLQTDLSSSN 296 N ALD AAL IVRR+APFG+FP NMR++ KDD+WE+ITRF+FTRE+ L+ +L N Sbjct: 241 NPALDNAALRIVRRAAPFGKFPPNMRSS-DKDDVWEIITRFKFTREDALEAELRGGN 296 >ref|YP_004751443.1| TonB protein [Collimonas fungivorans Ter331] gb|AEK60620.1| TonB protein [Collimonas fungivorans Ter331] Length = 299 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 188/295 (63%), Positives = 236/295 (80%), Gaps = 5/295 (1%) Query: 1 VKFFAENRFLTIAIAGSVLVHAALLAVRFAAPDAFRLKPADPGLEVILVNAKHDKAPVKA 60 +K F +NR L AIA SVL HA LLAVRFAAP+AFRLKP DP LEVILVNAKH+ PVKA Sbjct: 1 MKSFFQNRILVGAIAASVLAHAGLLAVRFAAPEAFRLKPTDPLLEVILVNAKHNTKPVKA 60 Query: 61 DAIAQANLDGGGNANQGRAKSPLPDMRKVETGDSVKAAQRKVAELEAQQQKILAQMNKNA 120 +A+AQANLDGGGNA+ GRAKSPLPDMRK E GD+V+A +R++ +LE QQQ++LAQM K Sbjct: 61 EALAQANLDGGGNADAGRAKSPLPDMRKSEDGDNVQATRRRIEQLEQQQQQMLAQMRKET 120 Query: 121 PVVATPEREPHKEVQ---PQLNAKDLLDTAKAVARMEAEVAKNIEEYNKRPKKTQITART 177 P+ P + + + PQ + +D++++AKA+AR EAE+AKNI++YNKRPKKTQIT T Sbjct: 121 PL-KMPVMDLNDKASDNTPQPSGRDMVESAKAIARKEAEIAKNIDDYNKRPKKTQITPST 179 Query: 178 REAGYAMYYKALQEKIEKIGTLNFPQRDGKKLYGELVIYIPVYQDGSIYDKEGGVRVERS 237 R GYA YYK+ Q+K+EK+GTLNFP+++G+ LYG LV+YIP+YQDGS+Y +EGG RVERS Sbjct: 180 RAVGYAAYYKSFQDKVEKLGTLNFPKKNGRNLYGRLVVYIPIYQDGSLYTREGGPRVERS 239 Query: 238 SGNLALDAAALTIVRRSAPFGRFPDNMRTTGGKDDIWEVITRFRFTREETLQTDL 292 SGN LD A L I+ RSAPFGRFP+NMR++ GKDD+WEVI+ F FTRE L+ L Sbjct: 240 SGNPELDRATLKIIERSAPFGRFPENMRSS-GKDDVWEVISTFEFTREGVLEAQL 293