BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0059.p (425 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001354657.1| UDP-N-acetylmuramate: L-alanyl-gamma-D-gluta... 664 0.0 ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutam... 661 0.0 ref|YP_004751439.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutam... 655 0.0 ref|YP_001100996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutam... 643 0.0 ref|ZP_08274963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamy... 639 0.0 >ref|YP_001354657.1| UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Janthinobacterium sp. Marseille] gb|ABR89478.1| UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Janthinobacterium sp. Marseille] Length = 457 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/466 (72%), Positives = 374/466 (80%), Gaps = 51/466 (10%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHKVTGCDANVYPPMSTQLEAQGIELIQGFDPGQVKL 60 MHIHILG+CGTFMGGLAVLAK AGH VTGCDANVYPPMSTQLEAQGI+LI+G+ P Q+ L Sbjct: 1 MHIHILGVCGTFMGGLAVLAKAAGHTVTGCDANVYPPMSTQLEAQGIKLIEGYGPEQISL 60 Query: 61 QPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPEWMGNHILRDKWVLAVAGTHGKTTTSAM 120 PDL+VIGNVVSRGNPLMEEILNRGLPY SGP+W+G HIL+ KWVLAVAGTHGKTTTS+M Sbjct: 61 APDLYVIGNVVSRGNPLMEEILNRGLPYTSGPQWIGEHILQGKWVLAVAGTHGKTTTSSM 120 Query: 121 LAWILEDAGYAPGFLIGGVPMNFGISARLSGMKDGKKQDSIFFVIEADEYDTAFFDKRSK 180 LAWILEDAGY PGFLIGGVPMNFGISARLS G ++S FFVIEADEYDTAFFDKRSK Sbjct: 121 LAWILEDAGYDPGFLIGGVPMNFGISARLS----GSGKESSFFVIEADEYDTAFFDKRSK 176 Query: 181 FVHYHARTAILNNLEYDHADIFPDLTAIETQFHHLVRTIPGIGRLVVNGREPALERVIAR 240 FVHYHA+TAILNNLEYDHADIFPDL AIETQFHHLVRT+PG+GR++ NGRE +L+RV+ R Sbjct: 177 FVHYHAKTAILNNLEYDHADIFPDLHAIETQFHHLVRTVPGVGRVIANGREASLQRVLQR 236 Query: 241 GCWSEHENFGVNPGQSGWSLETRDDGSFDIGFNGVPQGTVNWSLTGEHNRMNALA----- 295 GCWSE E FG G+ GWSL T DDG+FD+ FNG QGTV WSLTGEHNRMNALA Sbjct: 237 GCWSESEWFG---GKEGWSLATHDDGNFDVIFNGELQGTVQWSLTGEHNRMNALAAIAAA 293 Query: 296 ---------AIAAARAFP---------------------------IATTVAGLRKKVGKD 319 AIAA F IATTV GLRKKVGK Sbjct: 294 RHVGVLPAQAIAALGQFENVKRRMELRGTVKDIAVYDDFAHHPTAIATTVEGLRKKVGK- 352 Query: 320 GGGRIIAVLEPRSNTMKLGTMKDALPASLTDADLVFGYGAKGSGKEALGWDLAQALSPLG 379 RI+AVLEPRSNTMKLGTMK+ALP SL DADL+FGYGA G+GK+ALGWDLA+AL+PLG Sbjct: 353 --ARILAVLEPRSNTMKLGTMKEALPGSLVDADLIFGYGASGNGKDALGWDLAEALAPLG 410 Query: 380 EKANAFDDLGALVQAIKQAARPGDHVLVMSNGGFGGVHQKLLDALA 425 EKA +F+DL LVQAI Q+A+ GD VLVMSNGGFGGVHQK+LDALA Sbjct: 411 EKARSFNDLPTLVQAIAQSAQAGDQVLVMSNGGFGGVHQKILDALA 456 >ref|YP_003773829.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61921.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 460 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/466 (75%), Positives = 377/466 (80%), Gaps = 47/466 (10%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHKVTGCDANVYPPMSTQLEAQGIELIQGFDPGQVKL 60 MHIHILGICGTFMGGLAVLAKEAGH VTGCDANVYPPMSTQLEAQGI L QGFD QV+L Sbjct: 1 MHIHILGICGTFMGGLAVLAKEAGHTVTGCDANVYPPMSTQLEAQGITLTQGFDAAQVEL 60 Query: 61 QPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPEWMGNHILRDKWVLAVAGTHGKTTTSAM 120 +PDLFVIGNVVSRGNPLMEEILNRGLPYVSGP+WMG +IL+DKWVLAVAGTHGKTTTSAM Sbjct: 61 EPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPQWMGENILQDKWVLAVAGTHGKTTTSAM 120 Query: 121 LAWILEDAGYAPGFLIGGVPMNFGISARLSGMKDGKKQDSIFFVIEADEYDTAFFDKRSK 180 LAW+LE AGY PGFLIGGVPMNFG+SARL DG+ + FFVIEADEYDTAFFDKRSK Sbjct: 121 LAWVLEHAGYQPGFLIGGVPMNFGVSARLG--SDGQGGPAPFFVIEADEYDTAFFDKRSK 178 Query: 181 FVHYHARTAILNNLEYDHADIFPDLTAIETQFHHLVRTIPGIGRLVVNGREPALERVIAR 240 FVHY RTA+LNNLEYDHADIFPDL AIETQFHHLVRT+PGIGRL+VNGREPAL+RV+AR Sbjct: 179 FVHYRTRTAVLNNLEYDHADIFPDLAAIETQFHHLVRTVPGIGRLIVNGREPALQRVLAR 238 Query: 241 GCWSEHENFGVNPGQSGWSLETRDDGSFDIGFNGVPQGTVNWSLTGEHNRMNALA----- 295 GCWSE E+FGV GQSGWSL T +DG FD+ F+G QGTV W LTGEHNRMNALA Sbjct: 239 GCWSEREDFGVAQGQSGWSLLTHEDGRFDVFFDGQTQGTVEWQLTGEHNRMNALAAIAAA 298 Query: 296 ---------AIAAARAF---------------------------PIATTVAGLRKKVGKD 319 AIAA AF IATTVAGLRKKV Sbjct: 299 RHVGVPVAQAIAALGAFQSVKRRMELRGSANGVAVYDDFAHHPTAIATTVAGLRKKV--- 355 Query: 320 GGGRIIAVLEPRSNTMKLGTMKDALPASLTDADLVFGYGAKGSGKEALGWDLAQALSPLG 379 G RI+AVLEPRSNTMKLGTMK ALP SL DADLVFG+GA +G++ALGWDL +AL+PLG Sbjct: 356 GAARILAVLEPRSNTMKLGTMKQALPGSLADADLVFGFGAH-TGRDALGWDLGEALAPLG 414 Query: 380 EKANAFDDLGALVQAIKQAARPGDHVLVMSNGGFGGVHQKLLDALA 425 KA AFDDL ALVQA+K AARPGDHVLVMSNGGFGGVHQKLLDALA Sbjct: 415 AKAAAFDDLAALVQAVKAAARPGDHVLVMSNGGFGGVHQKLLDALA 460 >ref|YP_004751439.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Collimonas fungivorans Ter331] gb|AEK60616.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Collimonas fungivorans Ter331] Length = 470 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/466 (73%), Positives = 371/466 (79%), Gaps = 48/466 (10%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHKVTGCDANVYPPMSTQLEAQGIELIQGFDPGQVKL 60 MHIHILGICGTFMGGLAVLAK+AGHKVTGCDANVYPPMSTQLEAQGI LIQGF Q L Sbjct: 1 MHIHILGICGTFMGGLAVLAKQAGHKVTGCDANVYPPMSTQLEAQGISLIQGFGVEQTGL 60 Query: 61 QPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPEWMGNHILRDKWVLAVAGTHGKTTTSAM 120 QPDL+VIGNVV RGNPLMEEILNRGLPYVSGP+W+G HILRDKWVLAVAGTHGKTTTSAM Sbjct: 61 QPDLYVIGNVVVRGNPLMEEILNRGLPYVSGPQWIGEHILRDKWVLAVAGTHGKTTTSAM 120 Query: 121 LAWILEDAGYAPGFLIGGVPMNFGISARLSGMKDGKKQDSIFFVIEADEYDTAFFDKRSK 180 LAWILEDAGY PGFLIGGVPMNFGISARLSG K+G S FFVIEADEYDTAFFDKRSK Sbjct: 121 LAWILEDAGYDPGFLIGGVPMNFGISARLSG-KEGAAPSS-FFVIEADEYDTAFFDKRSK 178 Query: 181 FVHYHARTAILNNLEYDHADIFPDLTAIETQFHHLVRTIPGIGRLVVNGREPALERVIAR 240 FVHYHA+TAILNNLEYDHADIFPDL AIETQFHHLVRTIPG+GRLVVN REPAL+RV+ R Sbjct: 179 FVHYHAKTAILNNLEYDHADIFPDLAAIETQFHHLVRTIPGVGRLVVNAREPALQRVLDR 238 Query: 241 GCWSEHENFGVNPGQSGWSLETRDDGSFDIGFNGVPQGTVNWSLTGEHNRMNALAAIAAA 300 GCWSE E FG + + GWSL T+D+G F++ F+G PQGTV W L+GEHNRMNALAAIAAA Sbjct: 239 GCWSEKEFFGGD--RQGWSLSTQDNGHFEVSFDGQPQGTVQWGLSGEHNRMNALAAIAAA 296 Query: 301 RAF-----------------------------------------PIATTVAGLRKKVGKD 319 R IATTVAGLRKKV Sbjct: 297 RHVGVPPAQAIETLSRFENVKRRMELRGTVREIAVYDDFAHHPTAIATTVAGLRKKV--- 353 Query: 320 GGGRIIAVLEPRSNTMKLGTMKDALPASLTDADLVFGYGAKGSGKEALGWDLAQALSPLG 379 G RI+AVLEPRSNTMKLG MK+ALP SL +ADLVFGYGA G+GK+AL WDLA AL PLG Sbjct: 354 GAARILAVLEPRSNTMKLGAMKEALPGSLDEADLVFGYGASGTGKDALDWDLAAALQPLG 413 Query: 380 EKANAFDDLGALVQAIKQAARPGDHVLVMSNGGFGGVHQKLLDALA 425 KA+ + +L LV AI +AARPGD VLVMSNGGFGGVHQK+L AL+ Sbjct: 414 AKASTYHELDQLVAAIAKAARPGDQVLVMSNGGFGGVHQKILAALS 459 >ref|YP_001100996.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Herminiimonas arsenicoxydans] emb|CAL62875.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (Murein peptide ligase) [Herminiimonas arsenicoxydans] Length = 459 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/466 (70%), Positives = 366/466 (78%), Gaps = 49/466 (10%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHKVTGCDANVYPPMSTQLEAQGIELIQGFDPGQVKL 60 MHIHILG+CGTFMGGLAVLAK AGH VTGCDANVYPPMSTQLEAQGI+LI+GF Q+ L Sbjct: 1 MHIHILGVCGTFMGGLAVLAKAAGHTVTGCDANVYPPMSTQLEAQGIKLIEGFGTEQLDL 60 Query: 61 QPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPEWMGNHILRDKWVLAVAGTHGKTTTSAM 120 +PDL+VIGNVVSRGNPLMEEILNRGLPY SGP+W+G HIL+ KWVLAVAGTHGKTTTS+M Sbjct: 61 EPDLYVIGNVVSRGNPLMEEILNRGLPYTSGPQWIGEHILQGKWVLAVAGTHGKTTTSSM 120 Query: 121 LAWILEDAGYAPGFLIGGVPMNFGISARLSGMKDGKKQDSIFFVIEADEYDTAFFDKRSK 180 LAWILEDAGY PGFLIGGVPMNFGISARLS G ++S FFVIEADEYDTAFFDKRSK Sbjct: 121 LAWILEDAGYDPGFLIGGVPMNFGISARLS----GTGRESSFFVIEADEYDTAFFDKRSK 176 Query: 181 FVHYHARTAILNNLEYDHADIFPDLTAIETQFHHLVRTIPGIGRLVVNGREPALERVIAR 240 FVHY A+TAILNNLEYDHADIFPDL AIETQFHHLVRT+PG+GR++ N RE +L+RVI R Sbjct: 177 FVHYRAKTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPGVGRMIANAREESLQRVIKR 236 Query: 241 GCWSEHENFGVNPGQSGWSLETRDDGSFDIGFNGVPQGTVNWSLTGEHNRMNALA----- 295 GCWSE E FG + Q GW++ T DD +FD+ FNG QGTV W L GEHNRMNALA Sbjct: 237 GCWSETEWFG-SKEQDGWTMTTHDDDTFDVFFNGEKQGTVQWPLNGEHNRMNALAAIAAA 295 Query: 296 ---------AIAAARAFP---------------------------IATTVAGLRKKVGKD 319 AIA+ F IATTVAGLRKKVG Sbjct: 296 RHVGVLPAQAIASLGQFENVKRRMELRGVVNDIAVYDDFAHHPTAIATTVAGLRKKVGT- 354 Query: 320 GGGRIIAVLEPRSNTMKLGTMKDALPASLTDADLVFGYGAKGSGKEALGWDLAQALSPLG 379 RI+AVLEPRSNTMKLGTMK ALP SL DADLVFGYGA G+GK+ALGWDLA+AL+PLG Sbjct: 355 --ARILAVLEPRSNTMKLGTMKAALPGSLLDADLVFGYGASGNGKDALGWDLAEALAPLG 412 Query: 380 EKANAFDDLGALVQAIKQAARPGDHVLVMSNGGFGGVHQKLLDALA 425 ++ +AF DL ALV AI + A+PGD +LVMSNGGFGGVHQK+LD LA Sbjct: 413 DRGSAFSDLNALVAAIAKNAQPGDQILVMSNGGFGGVHQKILDVLA 458 >ref|ZP_08274963.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF31569.1| UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [Oxalobacteraceae bacterium IMCC9480] Length = 461 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/466 (70%), Positives = 363/466 (77%), Gaps = 48/466 (10%) Query: 1 MHIHILGICGTFMGGLAVLAKEAGHKVTGCDANVYPPMSTQLEAQGIELIQGFDPGQVKL 60 MHIHILGICGTFMGGLAVLA++AGH+VTGCDANVYPPMSTQL+ QGIELI+GFDP Q+ L Sbjct: 1 MHIHILGICGTFMGGLAVLARQAGHRVTGCDANVYPPMSTQLQEQGIELIEGFDPEQISL 60 Query: 61 QPDLFVIGNVVSRGNPLMEEILNRGLPYVSGPEWMGNHILRDKWVLAVAGTHGKTTTSAM 120 PDLFVIGNVVSRGNPLME IL+RGLPY SGP+W+G HIL+D+WVLAVAGTHGKTTT++M Sbjct: 61 APDLFVIGNVVSRGNPLMEAILDRGLPYTSGPQWIGEHILKDRWVLAVAGTHGKTTTASM 120 Query: 121 LAWILEDAGYAPGFLIGGVPMNFGISARLSGMKDGKKQDSIFFVIEADEYDTAFFDKRSK 180 LAWILEDAGY PGFLIGGVP+NFGISARL+ G+ +S FFVIEADEYDTAFFDKRSK Sbjct: 121 LAWILEDAGYQPGFLIGGVPLNFGISARLA----GEGGESAFFVIEADEYDTAFFDKRSK 176 Query: 181 FVHYHARTAILNNLEYDHADIFPDLTAIETQFHHLVRTIPGIGRLVVNGREPALERVIAR 240 FVHY ART +LNNLEYDHADIFPDL AIETQFHHLVRT+P IGRL+VN RE AL VI R Sbjct: 177 FVHYRARTVVLNNLEYDHADIFPDLGAIETQFHHLVRTVPRIGRLLVNQREAALHTVIER 236 Query: 241 GCWSEHENFGVNPGQSGWSLETRDDGSFDIGFNGVPQGTVNWSLTGEHNRMNALA----- 295 GCWSE E FG +GW L+ DGSF + F+G PQGTV+W L GEHNRMNALA Sbjct: 237 GCWSEIEWFGGAADAAGWQLDEHADGSFTVIFHGAPQGTVHWMLNGEHNRMNALAAIAAA 296 Query: 296 ---------AIAAARAF---------------------------PIATTVAGLRKKVGKD 319 AIA+ AF I TTVAGLR+ VG Sbjct: 297 RHVGVPVAQAIASLGAFQNVRRRMELRGEVDAIRVFDDFAHHPTAITTTVAGLRQVVGT- 355 Query: 320 GGGRIIAVLEPRSNTMKLGTMKDALPASLTDADLVFGYGAKGSGKEALGWDLAQALSPLG 379 RI+AVLEPRSNTMKLGTMK ALP SL +ADLVFGYGAKG GK ALGW+LA+AL+PLG Sbjct: 356 --ARILAVLEPRSNTMKLGTMKSALPGSLAEADLVFGYGAKGDGKNALGWNLAEALAPLG 413 Query: 380 EKANAFDDLGALVQAIKQAARPGDHVLVMSNGGFGGVHQKLLDALA 425 +KA AFDDL LV AI AARPGD +LVMSNGGFGGVHQK+LDALA Sbjct: 414 QKAQAFDDLSELVAAIVAAARPGDQILVMSNGGFGGVHQKILDALA 459