BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0047.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754524.1| ribonucleotide reductase of class Ia (aerobi... 733 0.0 ref|YP_003773814.1| transmembrane ribonucleoside reductase small... 728 0.0 ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit... 712 0.0 ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit... 709 0.0 ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic... 689 0.0 >ref|YP_004754524.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Collimonas fungivorans Ter331] gb|AEK63701.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Collimonas fungivorans Ter331] Length = 389 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/400 (88%), Positives = 368/400 (92%), Gaps = 15/400 (3%) Query: 1 MLSWDDEVKATP--APSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAP--VD 56 MLSWD+E + P P+ P + A + RPQ SD ALNPALV + A VD Sbjct: 1 MLSWDEEKSSAPRTVPAQP-----------AFAPSGRPQMSDTALNPALVGQAAAAPAVD 49 Query: 57 VTRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKDPN 116 VT RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK+PN Sbjct: 50 VTHRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPN 109 Query: 117 GLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 176 GLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ Sbjct: 110 GLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 169 Query: 177 YIVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPQFTTGTTENDQKLLKSLIVF 236 YIVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDP+F TGTTENDQKLL+SLIVF Sbjct: 170 YIVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPEFKTGTTENDQKLLRSLIVF 229 Query: 237 ACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHL 296 ACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+KMENPHL Sbjct: 230 ACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKMENPHL 289 Query: 297 WTPEFRNEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPL 356 WTPEFR+EIK+LFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDP+ Sbjct: 290 WTPEFRDEIKALFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPM 349 Query: 357 FAQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 396 F QEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE Sbjct: 350 FPQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 389 >ref|YP_003773814.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum seropedicae SmR1] gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/397 (89%), Positives = 363/397 (91%), Gaps = 10/397 (2%) Query: 1 MLSWDDEVKA-TPAPSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAPVDVTR 59 MLSWDDE K AP P+ QPQLQ A S+ ALNPAL+ + VD TR Sbjct: 1 MLSWDDEAKQPAQAPRTPNL----QPQLQPAFGQ-----SNAALNPALMAGNSEQVDTTR 51 Query: 60 RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKDPNGLT 119 RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK+PNGLT Sbjct: 52 RVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLT 111 Query: 120 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 179 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV Sbjct: 112 EDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 171 Query: 180 ESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPQFTTGTTENDQKLLKSLIVFACI 239 ESLGLDEAEIFNAYHEV SIRDKDEFLIPFI+TLTDP+F TGT ENDQKLLKSLIVFACI Sbjct: 172 ESLGLDEAEIFNAYHEVASIRDKDEFLIPFIDTLTDPEFKTGTMENDQKLLKSLIVFACI 231 Query: 240 MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTP 299 MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTP Sbjct: 232 MEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTP 291 Query: 300 EFRNEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPLFAQ 359 EFR EIKSLFL AVELEYRYAEDTMPRGVLGLNAPMFK YLRFIANRRAQQIGLDPLFAQ Sbjct: 292 EFREEIKSLFLRAVELEYRYAEDTMPRGVLGLNAPMFKSYLRFIANRRAQQIGLDPLFAQ 351 Query: 360 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 396 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL+WE Sbjct: 352 EENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 388 >ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas arsenicoxydans] emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Herminiimonas arsenicoxydans] Length = 395 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/399 (85%), Positives = 365/399 (91%), Gaps = 7/399 (1%) Query: 1 MLSWDDEVKATPAPSAPHASQTPQPQLQSA--AVNARPQFSDVALNPALVT-KDEAPVDV 57 MLSWD+E K P+AP A T QP LQ A R Q DVAL+PA++ K A VD Sbjct: 1 MLSWDEEAK----PAAPQAQPTLQPALQQVRDAAAQRVQAQDVALDPAVMAGKPAATVDP 56 Query: 58 TRRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKDPNG 117 TRR++AADKRIING TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK+PNG Sbjct: 57 TRRMDAADKRIINGKTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNG 116 Query: 118 LTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 177 LT+DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY Sbjct: 117 LTDDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 176 Query: 178 IVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPQFTTGTTENDQKLLKSLIVFA 237 IVESLGLDE EIFNAY+E++SIRDKD+FLIPFI+ LTDP FTTGTTENDQ LL+SLIVFA Sbjct: 177 IVESLGLDEGEIFNAYNEIESIRDKDQFLIPFIDVLTDPNFTTGTTENDQTLLRSLIVFA 236 Query: 238 CIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLW 297 C+MEGLFFYVGF QILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+K+ENPHLW Sbjct: 237 CLMEGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHLW 296 Query: 298 TPEFRNEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPLF 357 TP+FR+EIK+LFL AVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGL+P+F Sbjct: 297 TPQFRDEIKALFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMF 356 Query: 358 AQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 396 QEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE Sbjct: 357 EQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 395 >ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium sp. Marseille] gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium sp. Marseille] Length = 392 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/396 (86%), Positives = 363/396 (91%), Gaps = 4/396 (1%) Query: 1 MLSWDDEVKATPAPSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAPVDVTRR 60 MLSWD+EVK A + Q++ AA R Q DVAL+PALV KD A VD TRR Sbjct: 1 MLSWDEEVKPAAPAPALQPALQ---QVRDAAAQ-RLQTQDVALDPALVAKDAAAVDPTRR 56 Query: 61 VNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKDPNGLTE 120 ++AADKR+ING TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK+PNGLT+ Sbjct: 57 MDAADKRVINGQTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKNPNGLTD 116 Query: 121 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 180 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE Sbjct: 117 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 176 Query: 181 SLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPQFTTGTTENDQKLLKSLIVFACIM 240 SLGLDE EIFNAY+EV+SIRDKD+FLIPFI TLTDP+F TGTTENDQKLL+SLIVFAC+M Sbjct: 177 SLGLDEGEIFNAYNEVESIRDKDQFLIPFIETLTDPEFKTGTTENDQKLLRSLIVFACLM 236 Query: 241 EGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPE 300 EGLFFYVGF QILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINT+K+ENPHLWTP+ Sbjct: 237 EGLFFYVGFAQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKLENPHLWTPQ 296 Query: 301 FRNEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPLFAQE 360 FR EIK+LFL AVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGL+P+F QE Sbjct: 297 FREEIKTLFLRAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFEQE 356 Query: 361 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 396 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE Sbjct: 357 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 392 >ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 416 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/396 (84%), Positives = 359/396 (90%), Gaps = 6/396 (1%) Query: 1 MLSWDDEVKATPAPSAPHASQTPQPQLQSAAVNARPQFSDVALNPALVTKDEAPVDVTRR 60 MLSWD+EV P+ +A L +A A +DVAL+P+LV + E D RR Sbjct: 27 MLSWDEEVTPAVNPAIRNAV------LPTAVTAATTAAADVALDPSLVPQAEPKADPARR 80 Query: 61 VNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKDPNGLTE 120 +NAADKRIING+TDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWK PNGLT+ Sbjct: 81 MNAADKRIINGNTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKSPNGLTD 140 Query: 121 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVE 180 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI E Sbjct: 141 DERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYITE 200 Query: 181 SLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPQFTTGTTENDQKLLKSLIVFACIM 240 SLGLDEAEIFNAYHEVKSIRDKDEFLIPFI+ LTDP FTTGTT NDQKLLKSLIVF+C+M Sbjct: 201 SLGLDEAEIFNAYHEVKSIRDKDEFLIPFIDALTDPLFTTGTTINDQKLLKSLIVFSCLM 260 Query: 241 EGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTVKMENPHLWTPE 300 EGLFFYVGF QILALGRQNKM+GAAEQYQYILRDESMHCNFGIDL+NT+KMENPHLWTPE Sbjct: 261 EGLFFYVGFAQILALGRQNKMVGAAEQYQYILRDESMHCNFGIDLVNTIKMENPHLWTPE 320 Query: 301 FRNEIKSLFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLDPLFAQE 360 FR+EIK+LFL+AVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGL+P+F E Sbjct: 321 FRDEIKALFLTAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLEPMFENE 380 Query: 361 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 396 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGAL+WE Sbjct: 381 ENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWE 416