BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0041.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773810.1| ABC transporter permease [Herbaspirillum ser... 425 e-117 ref|YP_004754531.1| CcsA-like protein [Collimonas fungivorans Te... 413 e-113 ref|YP_001354674.1| ABC-type transport system, permease componen... 390 e-106 ref|YP_001101013.1| hypothetical protein HEAR2775 [Herminiimonas... 382 e-104 ref|ZP_08272678.1| CcsA-like protein [Oxalobacteraceae bacterium... 363 2e-98 >ref|YP_003773810.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61902.1| ABC-type transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 270 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 231/270 (85%), Positives = 252/270 (93%), Gaps = 1/270 (0%) Query: 1 MQTYFFILAALLYLGCAFLPSERRLPISLGTVIGWLLHGGALVYDMFAPDAVRVGFAVML 60 MQTYFFILAALLYL CAF+PS+RR+PISLG V GW+LHGGAL+ DMFAPDA+RVGFAVML Sbjct: 1 MQTYFFILAALLYLACAFMPSQRRMPISLGIVAGWVLHGGALLSDMFAPDALRVGFAVML 60 Query: 61 SATMWVSVAAYWLENRNFSLDSLRVLVLPVAAVAVILPSVFPGNMVELAGKSDWFLWHIA 120 S+T+W+SVAAYWLENRNFSLDS+RVLVLPVAA+AV+LPS+FPGNMV L GKSDWFL HIA Sbjct: 61 SSTLWISVAAYWLENRNFSLDSMRVLVLPVAALAVVLPSIFPGNMVALTGKSDWFLAHIA 120 Query: 121 VSILAYSTLTIAAFHAVLMVLQESRLHTRPKMGAAQPGWFSIALDRLPALLTMEKILFRL 180 +SILAYSTLTIAAFHAVLMVLQESRLHTRP + A Q GWF +ALDRLPALLTMEK+LFRL Sbjct: 121 ISILAYSTLTIAAFHAVLMVLQESRLHTRPGL-ATQSGWFGLALDRLPALLTMEKLLFRL 179 Query: 181 IAFGFVLLTLTVLSGVVFSEQLFQKAFRWDHKTIFTLLSWCLFGLLLAGRKWQGWRGRTA 240 IAFGF LLTLTVLSGVVFSEQLF +WDHKTIFT+LSW LFGLLLAGR+WQGWRGRTA Sbjct: 180 IAFGFTLLTLTVLSGVVFSEQLFGTPLKWDHKTIFTMLSWLLFGLLLAGRRWQGWRGRTA 239 Query: 241 LSFTLAGFAILLLAYVGSRFVLEVVLHRIL 270 LSFTLAGFAILLLAYVGSRFVLEVVLHR+L Sbjct: 240 LSFTLAGFAILLLAYVGSRFVLEVVLHRVL 269 >ref|YP_004754531.1| CcsA-like protein [Collimonas fungivorans Ter331] gb|AEK63708.1| CcsA-like protein [Collimonas fungivorans Ter331] Length = 269 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 212/271 (78%), Positives = 239/271 (88%), Gaps = 2/271 (0%) Query: 1 MQTYFFILAALLYLGCAFLPSERRLPISLGTVIGWLLHGGALVYDMFAPDAVRVGFAVML 60 MQTY F+L ALLY+GC FLPS RR IS+ + W+LHGG L D+ P+ +RVGF++ML Sbjct: 1 MQTYLFVLVALLYIGCTFLPSSRRQTISIVVAVAWVLHGGVLWSDVVGPEQLRVGFSMML 60 Query: 61 SATMWVSVAAYWLENRNFSLDSLRVLVLPVAAVAVILPSVFPGNMVELAGKSDWFLWHIA 120 SAT+WVSVAAYWLENRN++LD LRVLVLP+AA+A ILP++FPGNMV L GKS FLWHI Sbjct: 61 SATLWVSVAAYWLENRNYTLDGLRVLVLPMAALAAILPAIFPGNMVPLNGKSPVFLWHIV 120 Query: 121 VSILAYSTLTIAAFHAVLMVLQESRLHTRPKMGAAQPGWFSIALDRLPALLTMEKILFRL 180 +SILAYSTLTIAAFHAVLMVLQESRLHTRP G A+ GWF +ALDRLPALLTMEK+LFRL Sbjct: 121 ISILAYSTLTIAAFHAVLMVLQESRLHTRP--GVAKAGWFGVALDRLPALLTMEKLLFRL 178 Query: 181 IAFGFVLLTLTVLSGVVFSEQLFQKAFRWDHKTIFTLLSWCLFGLLLAGRKWQGWRGRTA 240 IAFGF LLTLTVLSGVVFSE+LF KAF+WDHKTIFT+LSW LFGLLLAGR+WQGWRGRTA Sbjct: 179 IAFGFFLLTLTVLSGVVFSEELFNKAFKWDHKTIFTMLSWALFGLLLAGRRWQGWRGRTA 238 Query: 241 LSFTLAGFAILLLAYVGSRFVLEVVLHRILV 271 LSFTL GFA+LLLAYVGSRFVLEVVLHR+LV Sbjct: 239 LSFTLTGFAVLLLAYVGSRFVLEVVLHRVLV 269 >ref|YP_001354674.1| ABC-type transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR90038.1| ABC-type transport system, permease component [Janthinobacterium sp. Marseille] Length = 269 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/270 (71%), Positives = 227/270 (84%), Gaps = 2/270 (0%) Query: 1 MQTYFFILAALLYLGCAFLPSERRLPISLGTVIGWLLHGGALVYDMFAPDAVRVGFAVML 60 M TYFF+LAAL Y CAFLP+++R IS GT+IGWLLHG AL D+ A+R+GFA+ML Sbjct: 1 MYTYFFVLAALFYAACAFLPAKQRTAISTGTLIGWLLHGAALWVDVIGHGALRMGFAIML 60 Query: 61 SATMWVSVAAYWLENRNFSLDSLRVLVLPVAAVAVILPSVFPGNMVELAGKSDWFLWHIA 120 S +W+SVA YWLENRNFSLD LR+LVLP AAV V+LP+VFPG+M+ L GKS F WHIA Sbjct: 61 SGALWISVAVYWLENRNFSLDGLRILVLPCAAVGVLLPTVFPGSMIPLDGKSALFPWHIA 120 Query: 121 VSILAYSTLTIAAFHAVLMVLQESRLHTRPKMGAAQPGWFSIALDRLPALLTMEKILFRL 180 +++LAYSTLTIAAFHAVLM LQES+LHTR + + GWF++A+DRLPALLTMEK+LFRL Sbjct: 121 IAMLAYSTLTIAAFHAVLMALQESKLHTR--LSVQKTGWFALAIDRLPALLTMEKLLFRL 178 Query: 181 IAFGFVLLTLTVLSGVVFSEQLFQKAFRWDHKTIFTLLSWCLFGLLLAGRKWQGWRGRTA 240 I GF LLTLTVLSGVVFSE+LF KAF+W+HKTIFT+LSW LFG+LLAGR+W+GWRG+TA Sbjct: 179 IGIGFFLLTLTVLSGVVFSEELFGKAFKWEHKTIFTMLSWILFGVLLAGRRWRGWRGKTA 238 Query: 241 LSFTLAGFAILLLAYVGSRFVLEVVLHRIL 270 LSFTL GF L LAYVGSRFV EV+LHR L Sbjct: 239 LSFTLTGFTTLFLAYVGSRFVFEVILHRSL 268 >ref|YP_001101013.1| hypothetical protein HEAR2775 [Herminiimonas arsenicoxydans] emb|CAL62892.1| Putative cytochrome c assembly protein [Herminiimonas arsenicoxydans] Length = 269 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/268 (74%), Positives = 231/268 (86%), Gaps = 2/268 (0%) Query: 1 MQTYFFILAALLYLGCAFLPSERRLPISLGTVIGWLLHGGALVYDMFAPDAVRVGFAVML 60 M TY F+LAA Y CA LPS+ R+ ISLGT+ GWLLHGGAL D+ ++R+GFA+ML Sbjct: 1 MYTYLFVLAAFCYAVCACLPSKNRMAISLGTLFGWLLHGGALWVDVVTSGSLRMGFAIML 60 Query: 61 SATMWVSVAAYWLENRNFSLDSLRVLVLPVAAVAVILPSVFPGNMVELAGKSDWFLWHIA 120 SAT+W+SVAAYWLENRNFSLD LR+LVLP AAV+V+LP+VFPGN++ L GKS F WHIA Sbjct: 61 SATLWISVAAYWLENRNFSLDGLRILVLPCAAVSVLLPTVFPGNLIPLDGKSALFPWHIA 120 Query: 121 VSILAYSTLTIAAFHAVLMVLQESRLHTRPKMGAAQPGWFSIALDRLPALLTMEKILFRL 180 +++LAYSTLTIAAFHAVLM LQES+LHTR A + GWF++ALDRLPALLTMEK+LFRL Sbjct: 121 IAMLAYSTLTIAAFHAVLMALQESKLHTRQS--AQKAGWFALALDRLPALLTMEKLLFRL 178 Query: 181 IAFGFVLLTLTVLSGVVFSEQLFQKAFRWDHKTIFTLLSWCLFGLLLAGRKWQGWRGRTA 240 I FGF LLTLTVLSGVVFSE+LF KAF+W+HKTIFT+LSW LFG+LLAGRKW+GWRG+TA Sbjct: 179 IGFGFFLLTLTVLSGVVFSEELFGKAFKWEHKTIFTMLSWLLFGILLAGRKWRGWRGKTA 238 Query: 241 LSFTLAGFAILLLAYVGSRFVLEVVLHR 268 LSFTL GF LLLAYVGSRFVLEVVLHR Sbjct: 239 LSFTLTGFTTLLLAYVGSRFVLEVVLHR 266 >ref|ZP_08272678.1| CcsA-like protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33856.1| CcsA-like protein [Oxalobacteraceae bacterium IMCC9480] Length = 272 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 186/269 (69%), Positives = 217/269 (80%), Gaps = 1/269 (0%) Query: 1 MQTYFFILAALLYLGCAFLPSERRLPISLGTVIGWLLHGGALVYDMFAPDAVRVGFAVML 60 MQ Y FI AALLY CAFLP+ RLPIS G + W LHG L D+ D++R+GFA ML Sbjct: 1 MQNYSFIAAALLYASCAFLPARWRLPISGGVALAWALHGLGLWSDVVVQDSLRLGFAQML 60 Query: 61 SATMWVSVAAYWLENRNFSLDSLRVLVLPVAAVAVILPSVFPGNMVELAGKSDWFLWHIA 120 SA +W+SVA YW+ENRN +LDS+RVL+LPVAAVAV+LP VFPGN+V L GK+ F WH+A Sbjct: 61 SAALWISVAVYWVENRNMALDSMRVLMLPVAAVAVLLPIVFPGNVVALDGKTALFPWHVA 120 Query: 121 VSILAYSTLTIAAFHAVLMVLQESRLHT-RPKMGAAQPGWFSIALDRLPALLTMEKILFR 179 V++LAYSTLT AAFHAVLM +QES LH R + + GW++ A+ RLPALLTMEK+LFR Sbjct: 121 VAMLAYSTLTTAAFHAVLMAVQESHLHAHRALLNERKGGWYASAIARLPALLTMEKMLFR 180 Query: 180 LIAFGFVLLTLTVLSGVVFSEQLFQKAFRWDHKTIFTLLSWCLFGLLLAGRKWQGWRGRT 239 LIA GF LLTLTVLSG++FSEQLF KA WDHKTIFTLLSW LFG+LLAGR W+GWRG+T Sbjct: 181 LIAIGFGLLTLTVLSGLLFSEQLFGKALTWDHKTIFTLLSWVLFGVLLAGRHWRGWRGKT 240 Query: 240 ALSFTLAGFAILLLAYVGSRFVLEVVLHR 268 AL+FTL GF LLLAYVGSRFVLEVVLHR Sbjct: 241 ALTFTLTGFVTLLLAYVGSRFVLEVVLHR 269