BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0039.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporte... 444 e-123 ref|ZP_08272674.1| ABC-type nitrate/sulfonate/bicarbonate transp... 418 e-115 ref|YP_001418930.1| binding-protein-dependent transport systems ... 390 e-107 ref|YP_001923918.1| ABC transporter inner membrane protein [Meth... 390 e-107 ref|YP_001638734.1| binding-protein-dependent transport systems ... 388 e-106 >ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61900.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust. Identities = 239/261 (91%), Positives = 248/261 (95%) Query: 1 LLVPVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGE 60 LLVP+ VIA+W+ AS GWINP +LPSPWAV+ KW EYA PLKPYDP G+WLAW FSGE Sbjct: 13 LLVPIIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFSGE 72 Query: 61 LLMDAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAI 120 L+MDAIGSLYRVV GFLIGAGLALPLGLLMGSSQR+YGLMNLTVQVIRPIPPIAYIPLAI Sbjct: 73 LVMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAI 132 Query: 121 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAA 180 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQ TLF+RVMLPAA Sbjct: 133 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAA 192 Query: 181 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA 240 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA Sbjct: 193 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA 252 Query: 241 IDLGMSRLNNYMLRWHRGLEN 261 IDLGMSRLNNYMLRWHRGLEN Sbjct: 253 IDLGMSRLNNYMLRWHRGLEN 273 >ref|ZP_08272674.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Oxalobacteraceae bacterium IMCC9480] gb|EGF33852.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Oxalobacteraceae bacterium IMCC9480] Length = 273 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/261 (79%), Positives = 235/261 (90%) Query: 1 LLVPVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGE 60 L+VPV IAIWQ SS+GW+N LVLPSP+AV+HKWFEY PL PY G+WL W FSGE Sbjct: 13 LVVPVVAIAIWQTFSSMGWVNALVLPSPYAVLHKWFEYLLPLTPYSADSGSWLKWAFSGE 72 Query: 61 LLMDAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAI 120 LL+D S+YRVVVGFL+GAGLALPLGL MG+S+RVY +N +QV+RPIPPIAYIPL+I Sbjct: 73 LLIDTFNSMYRVVVGFLVGAGLALPLGLSMGASKRVYAWLNPLMQVLRPIPPIAYIPLSI 132 Query: 121 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAA 180 LWFGLGNPPA+FLI++GAFFPVL+NTIAGVR VDSIYLRAARNLGASQ TLF+RVMLPAA Sbjct: 133 LWFGLGNPPAVFLIAIGAFFPVLINTIAGVRNVDSIYLRAARNLGASQSTLFLRVMLPAA 192 Query: 181 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA 240 VPYILSGVRIGIGTAFIVVIVAEMIAV+NGLGFRI+EAREYFWSDKIIAGMI+IG+LGL Sbjct: 193 VPYILSGVRIGIGTAFIVVIVAEMIAVNNGLGFRILEAREYFWSDKIIAGMISIGMLGLV 252 Query: 241 IDLGMSRLNNYMLRWHRGLEN 261 IDL ++RLNN++LRWHRGLEN Sbjct: 253 IDLAVTRLNNHLLRWHRGLEN 273 >ref|YP_001418930.1| binding-protein-dependent transport systems inner membrane component [Xanthobacter autotrophicus Py2] gb|ABS69273.1| binding-protein-dependent transport systems inner membrane component [Xanthobacter autotrophicus Py2] Length = 273 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/261 (74%), Positives = 228/261 (87%) Query: 1 LLVPVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGE 60 L VPVA + +WQ A SLG +NP+VLPSP AV +W+ Y AP++ YDPA G++LAWLFSGE Sbjct: 13 LAVPVAALVLWQLACSLGLVNPMVLPSPAAVAVRWWAYLAPMEAYDPAAGSYLAWLFSGE 72 Query: 61 LLMDAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAI 120 ++ DAIGSL RV +GF +GAGLALPLGL MGSS +Y +N +QV+RPIPPIAYIPL+I Sbjct: 73 MIHDAIGSLTRVALGFFVGAGLALPLGLFMGSSDTIYRHINPLMQVLRPIPPIAYIPLSI 132 Query: 121 LWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAA 180 LWFGLGN PA+FLI++GAFFPVLMNTIAGVR VD IY+RAAR+LGAS+ T+F RV+LPAA Sbjct: 133 LWFGLGNAPAVFLIAIGAFFPVLMNTIAGVRHVDGIYIRAARSLGASRLTIFRRVILPAA 192 Query: 181 VPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLA 240 PYILSG RIGIGTAFIVVIVAEMIAV+NGLGFRI+EAREYFWSDKIIAGM TIGLLGLA Sbjct: 193 TPYILSGARIGIGTAFIVVIVAEMIAVNNGLGFRILEAREYFWSDKIIAGMFTIGLLGLA 252 Query: 241 IDLGMSRLNNYMLRWHRGLEN 261 ID+ +SRLNN++LRWHRGLE+ Sbjct: 253 IDMAVSRLNNHLLRWHRGLES 273 >ref|YP_001923918.1| ABC transporter inner membrane protein [Methylobacterium populi BJ001] gb|ACB79383.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium populi BJ001] Length = 273 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/259 (74%), Positives = 228/259 (88%) Query: 3 VPVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGELL 62 VP+AV+ IWQ A + G +NP+VLPSP AV +W+ Y APL+ YDPA+G+W WLFSGE+L Sbjct: 15 VPLAVLVIWQLACTAGLVNPMVLPSPAAVAARWWAYLAPLEAYDPAQGSWFLWLFSGEML 74 Query: 63 MDAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAILW 122 DA+ SLYRVVVGFL+GAGLALPLGL MG+S +Y +N +QV+RPIPPIAYIPL+ILW Sbjct: 75 HDALASLYRVVVGFLVGAGLALPLGLFMGTSDVIYRHINPLMQVLRPIPPIAYIPLSILW 134 Query: 123 FGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAAVP 182 FGLGN PA+FLI++GAFFPVLMNTIAGVR VD IY+RAAR+LGAS+ T+F RV+LPAA P Sbjct: 135 FGLGNAPAVFLIAIGAFFPVLMNTIAGVRHVDGIYIRAARSLGASRMTIFRRVILPAATP 194 Query: 183 YILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAID 242 YILSG RIGIGTAFIVVIVAEMIAV+NGLGFRI+EAREYFWSDKIIAGM+TIG LGL ID Sbjct: 195 YILSGARIGIGTAFIVVIVAEMIAVNNGLGFRILEAREYFWSDKIIAGMLTIGALGLIID 254 Query: 243 LGMSRLNNYMLRWHRGLEN 261 +G+SRLNN++LRWHRGLE+ Sbjct: 255 MGVSRLNNHLLRWHRGLES 273 >ref|YP_001638734.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium extorquens PA1] ref|YP_002420230.1| binding-protein-dependent transporters inner membrane component [Methylobacterium chloromethanicum CM4] gb|ABY29663.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium extorquens PA1] gb|ACK82302.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium chloromethanicum CM4] Length = 273 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 192/259 (74%), Positives = 225/259 (86%) Query: 3 VPVAVIAIWQAASSLGWINPLVLPSPWAVVHKWFEYAAPLKPYDPAEGNWLAWLFSGELL 62 VPVA++ IWQ A + G +NP+VLPSP AV +W+ Y APL+ YDP G+W AWLFSGE+L Sbjct: 15 VPVAILVIWQLACTAGLVNPMVLPSPAAVAVRWWAYLAPLEAYDPEHGSWFAWLFSGEML 74 Query: 63 MDAIGSLYRVVVGFLIGAGLALPLGLLMGSSQRVYGLMNLTVQVIRPIPPIAYIPLAILW 122 DA+ SLYRVVVGF +GAGLALPLGL MGSS +Y +N +QV+RPIPPIAYIPL+ILW Sbjct: 75 HDAMASLYRVVVGFAVGAGLALPLGLFMGSSDLIYRHINPLMQVLRPIPPIAYIPLSILW 134 Query: 123 FGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQRTLFVRVMLPAAVP 182 FGLGN PA+FLI++GAFFPVLMNTIAGVR VD IY+RAAR+LGAS+ T+F RV+LPAA P Sbjct: 135 FGLGNAPAVFLIAIGAFFPVLMNTIAGVRHVDGIYIRAARSLGASRMTIFRRVILPAATP 194 Query: 183 YILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAID 242 YILSG RIGIGTAFIVVIVAEMIAV+NGLGFRI+EAREYFWSDKIIAGM+TIG LGL ID Sbjct: 195 YILSGARIGIGTAFIVVIVAEMIAVNNGLGFRILEAREYFWSDKIIAGMLTIGALGLVID 254 Query: 243 LGMSRLNNYMLRWHRGLEN 261 + +SRLNN++LRWHRGLE+ Sbjct: 255 MAVSRLNNHLLRWHRGLES 273