BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0035.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773806.1| signal recognition particle subunit SRP54 pr...   156   1e-36
ref|ZP_04577380.1| signal recognition particle [Oxalobacter form...   143   1e-32
ref|YP_001897054.1| signal recognition particle protein [Burkhol...   140   6e-32
ref|ZP_02886465.1| signal recognition particle protein [Burkhold...   139   2e-31
ref|YP_004359178.1| Signal recognition particle protein [Burkhol...   139   2e-31

>ref|YP_003773806.1| signal recognition particle subunit SRP54 protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61898.1| signal recognition particle subunit SRP54 protein [Herbaspirillum
           seropedicae SmR1]
          Length = 456

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/83 (93%), Positives = 82/83 (98%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           MDQAEKQVRRMEG+INSMT QERAKPELIKATRKRRIAAGAGVQVQEVNRML+QFEQMQS
Sbjct: 371 MDQAEKQVRRMEGIINSMTPQERAKPELIKATRKRRIAAGAGVQVQEVNRMLSQFEQMQS 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPG 83
           MMKKLKGGGMMKMMR+MKGM+PG
Sbjct: 431 MMKKLKGGGMMKMMRNMKGMLPG 453


>ref|ZP_04577380.1| signal recognition particle [Oxalobacter formigenes HOxBLS]
 gb|EEO28342.1| signal recognition particle [Oxalobacter formigenes HOxBLS]
          Length = 455

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/85 (83%), Positives = 78/85 (91%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
            DQA KQV RM G+INSMT QERAKPELIKA+RKRRIAAGAGVQVQEVNR+L+QFEQMQS
Sbjct: 371 FDQANKQVGRMAGIINSMTPQERAKPELIKASRKRRIAAGAGVQVQEVNRLLSQFEQMQS 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKK+K GGMMK+MR +KGMMPGMR
Sbjct: 431 MMKKMKNGGMMKLMRGLKGMMPGMR 455


>ref|YP_001897054.1| signal recognition particle protein [Burkholderia phytofirmans
           PsJN]
 gb|ACD17830.1| signal recognition particle protein [Burkholderia phytofirmans
           PsJN]
          Length = 455

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 79/85 (92%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           M QAEKQ+RRMEG+INSMT QERAKP+LIKATRKRRIAAGAGVQVQEVNRML Q++QM++
Sbjct: 371 MGQAEKQMRRMEGIINSMTPQERAKPDLIKATRKRRIAAGAGVQVQEVNRMLNQYDQMRT 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKKLKGG + KMMR MKGM+PGMR
Sbjct: 431 MMKKLKGGNLQKMMRGMKGMLPGMR 455


>ref|ZP_02886465.1| signal recognition particle protein [Burkholderia graminis C4D1M]
 gb|EDT07901.1| signal recognition particle protein [Burkholderia graminis C4D1M]
          Length = 455

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/85 (82%), Positives = 78/85 (91%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           M QAEKQ+RRMEG+INSMT  ERAKP+LIKATRKRRIAAGAGVQVQEVNRML Q++QM++
Sbjct: 371 MSQAEKQMRRMEGIINSMTPLERAKPDLIKATRKRRIAAGAGVQVQEVNRMLNQYDQMRT 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKKLKGG M KMMR MKGM+PGMR
Sbjct: 431 MMKKLKGGNMQKMMRGMKGMLPGMR 455


>ref|YP_004359178.1| Signal recognition particle protein [Burkholderia gladioli BSR3]
 gb|AEA59222.1| Signal recognition particle protein [Burkholderia gladioli BSR3]
          Length = 455

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 77/85 (90%)

Query: 1   MDQAEKQVRRMEGMINSMTLQERAKPELIKATRKRRIAAGAGVQVQEVNRMLAQFEQMQS 60
           M QAEKQ+RRMEG+INSMT  ERAKPELIKATRKRRIAAGAGV VQEVNRML Q++QM++
Sbjct: 371 MGQAEKQIRRMEGIINSMTPAERAKPELIKATRKRRIAAGAGVPVQEVNRMLNQYDQMRT 430

Query: 61  MMKKLKGGGMMKMMRSMKGMMPGMR 85
           MMKKLKGG M KMMR +KGMMPG+R
Sbjct: 431 MMKKLKGGNMQKMMRGLKGMMPGLR 455