BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0020.p (280 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004847945.1| LysR family transcriptional regulator [Pseud... 266 3e-69 ref|ZP_03697981.1| transcriptional regulator, LysR family [Lutie... 266 3e-69 ref|YP_725994.1| LysR family transcriptional regulator [Ralstoni... 246 4e-63 ref|NP_249139.1| transcriptional regulator [Pseudomonas aerugino... 238 5e-61 ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudom... 238 8e-61 >ref|YP_004847945.1| LysR family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK77531.1| transcriptional regulator, LysR family [Pseudogulbenkiania sp. NH8B] Length = 302 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 130/288 (45%), Positives = 186/288 (64%), Gaps = 14/288 (4%) Query: 2 LEAFESAARHLSFTRAADELSFTESAISRKIALLEEYLGVQLFTRVKKRLQLTDAGKSYS 61 L+AFE+AARH SFTRAA+EL+ T+SA+ ++IA LEE LG+ LF R+K+R+ L++AG+ Y+ Sbjct: 11 LQAFEAAARHQSFTRAAEELALTQSAVCKQIATLEEMLGIALFNRIKRRVSLSEAGQVYA 70 Query: 62 QRVQESLDKLEMDTTLTMAHDAGRISLELAVLPTFALKWLMPRLHEFNALHPEVTIHVAA 121 + V+E LD+LE T MAH +ELA +PTFA +WL+PRL F A HP +TI++ Sbjct: 71 REVREHLDRLERSTLSIMAHQGSGGVIELAAIPTFATRWLIPRLPGFYAEHPNITINITT 130 Query: 122 REEPFLFSEAPFDAAIHFDHPVWANATSTYLFTEELIPICSPQLIGGKHCRKPADLLDYV 181 R + F+F++ FDA+IHF VW A + +LF EE+IP+CSPQL+ C +P DL+ Sbjct: 131 RSDTFIFADTVFDASIHFGTGVWPGAHADHLFGEEMIPVCSPQLLARHPCLQPQDLVKLK 190 Query: 182 LMHKTGRPEAWSRWFELAGCPDARARGG--------------MXPGIALVPRTYVMDDIE 227 L+H + R +AW +WF AG D A G G+ALVPR V ++I Sbjct: 191 LLHLSARHDAWHKWFAAAGASDLNAMVGPRYELFSMLVEAARAQMGVALVPRFLVQEEIR 250 Query: 228 SGQLTVPWEMVVPGAKDYYFVVPEQKQASQGVQLFLAWLLKVAEQYRD 275 SG L P+++ + Y+ V PE KQ ++ +Q F++WLL+ AEQYR Sbjct: 251 SGSLVTPFDIPMQSEMGYFLVYPESKQEAKVLQAFVSWLLEQAEQYRS 298 >ref|ZP_03697981.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gb|EEG08723.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 302 Score = 266 bits (679), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 130/288 (45%), Positives = 186/288 (64%), Gaps = 14/288 (4%) Query: 2 LEAFESAARHLSFTRAADELSFTESAISRKIALLEEYLGVQLFTRVKKRLQLTDAGKSYS 61 L+AFE+AARH SFTRAA+EL+ T+SA+ ++IA LEE LG+ LF R+K+R+ L++AG+ Y+ Sbjct: 11 LQAFEAAARHQSFTRAAEELALTQSAVCKQIATLEEMLGIALFNRIKRRVSLSEAGQVYA 70 Query: 62 QRVQESLDKLEMDTTLTMAHDAGRISLELAVLPTFALKWLMPRLHEFNALHPEVTIHVAA 121 + V+E LD+LE T MAH +ELA +PTFA +WL+PRL F A HP +TI++ Sbjct: 71 REVREHLDRLERSTLSIMAHQGSGGVIELAAIPTFATRWLIPRLPGFYAEHPNITINITT 130 Query: 122 REEPFLFSEAPFDAAIHFDHPVWANATSTYLFTEELIPICSPQLIGGKHCRKPADLLDYV 181 R + F+F++ FDA+IHF VW A + +LF EE+IP+CSPQL+ C +P DL+ Sbjct: 131 RSDTFIFADTVFDASIHFGTGVWPGAHADHLFGEEMIPVCSPQLLARHPCPQPQDLVKLK 190 Query: 182 LMHKTGRPEAWSRWFELAGCPDARARGG--------------MXPGIALVPRTYVMDDIE 227 L+H + R +AW +WF AG D A G G+ALVPR V ++I Sbjct: 191 LLHLSARHDAWHKWFAAAGASDLNAMVGPRYELFSMLVEAARAQMGVALVPRFLVQEEIR 250 Query: 228 SGQLTVPWEMVVPGAKDYYFVVPEQKQASQGVQLFLAWLLKVAEQYRD 275 SG L P+++ + Y+ V PE KQ ++ +Q F++WLL+ AEQYR Sbjct: 251 SGSLVTPFDIPMQSEMGYFLVYPESKQEAKVLQAFVSWLLEQAEQYRS 298 >ref|YP_725994.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ92626.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 301 Score = 246 bits (627), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 127/289 (43%), Positives = 176/289 (60%), Gaps = 18/289 (6%) Query: 2 LEAFESAARHLSFTRAADELSFTESAISRKIALLEEYLGVQLFTRVKKRLQLTDAGKSYS 61 L FE+AAR SF RAA E+ TESA+SR+IA LE YLGV+LFTRV+K++ L DAG+ Y Sbjct: 11 LAVFEAAARQGSFARAASEVCLTESAVSRQIATLETYLGVKLFTRVRKQVVLNDAGRLYL 70 Query: 62 QRVQESLDKLEMDTTLTMAHDAGRISLELAVLPTFALKWLMPRLHEFNALHPEVTIHVAA 121 + + +L ++E T+ MAH LELAV+PTFA +WL+PRL +F HP++ ++++ Sbjct: 71 KNIARNLAEIEAHTSALMAHKGVGGVLELAVIPTFANRWLLPRLRDFRERHPDIILNLSE 130 Query: 122 REEPFLFSEAPFDAAIHFDHPVWANATSTYLFTEELIPICSPQLIGGKHCRKPADLLDYV 181 R PF F E FDAA++F+HP W N LF EEL+PI SP+ + PADL + Sbjct: 131 RPLPFSFDETNFDAALNFEHPAWTNVVRVDLFDEELVPIVSPRYFDTQLLGAPADLAELP 190 Query: 182 LMHKTGRPEAWSRWFELAGCPD----------------ARARGGMXPGIALVPRTYVMDD 225 L+HK+ RPEAW WF +A D AR G+ G LVPR YV D+ Sbjct: 191 LLHKSTRPEAWRHWFAMAAVADFTPVSSMHFELYGMVIEAARAGL--GAGLVPRMYVQDE 248 Query: 226 IESGQLTVPWEMVVPGAKDYYFVVPEQKQASQGVQLFLAWLLKVAEQYR 274 IE L VP+++ + K Y V PE+K+ S VQLF W++ + +++ Sbjct: 249 IERNDLVVPFDLSLKHEKRYCLVYPERKKDSALVQLFRDWVVGIEAEWK 297 >ref|NP_249139.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] ref|ZP_07797716.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gb|AAG03837.1|AE004482_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gb|EFQ42812.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gb|EGM20783.1| transcriptional regulator [Pseudomonas aeruginosa 138244] dbj|GAA19462.1| probable transcriptional regulator [Pseudomonas aeruginosa NCMG1179] dbj|BAK92561.1| LysR family transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 302 Score = 238 bits (608), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 175/292 (59%), Gaps = 19/292 (6%) Query: 2 LEAFESAARHLSFTRAADELSFTESAISRKIALLEEYLGVQLFTRVKKRLQLTDAGKSYS 61 L +FESAARH SFT+AA+ELS T+SAI R+IA LEE+LGV+LF R ++ ++LT+AG SYS Sbjct: 11 LVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSYS 70 Query: 62 QRVQESLDKLEMDTTLTMAHDAGRISLELAVLPTFALKWLMPRLHEFNALHPEVTIHVAA 121 +RV LD +E DT M H G ++ELAV+PTF +WL+PRL F LHPEVTI++ Sbjct: 71 RRVAVRLDAVERDTLAVMGHQGGG-AIELAVVPTFGTQWLLPRLKRFQRLHPEVTINLTN 129 Query: 122 REEPFLFSEAPFDAAIHFDHPVWANATSTYLFTEELIPICSPQLIGGKHCRKPADLLDYV 181 R PFLF++ FDAA++F W+ S +L E +P+CSP+L+GG+ + Sbjct: 130 RTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRTLSAEQVAGLP 189 Query: 182 LMHKTGRPEAWSRWFELAGCPDAR----------------ARGGMXPGIALVPRTYVMDD 225 LM ++ RP AW +WF G A A GM G+AL+P + D+ Sbjct: 190 LMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGM--GVALIPPFLIQDE 247 Query: 226 IESGQLTVPWEMVVPGAKDYYFVVPEQKQASQGVQLFLAWLLKVAEQYRDVT 277 + G+L VP + YY ++PE++ S + F WL++ A QYR+ Sbjct: 248 LADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYREAN 299 >ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudomonas aeruginosa PACS2] ref|YP_788621.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002438052.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] ref|ZP_04930644.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719] ref|ZP_06876444.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gb|ABJ15413.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ54763.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719] emb|CAW25171.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gb|EGM21129.1| putative transcriptional regulator [Pseudomonas aeruginosa 152504] gb|AEO72935.1| putative transcriptional regulator [Pseudomonas aeruginosa M18] Length = 302 Score = 238 bits (607), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 123/292 (42%), Positives = 175/292 (59%), Gaps = 19/292 (6%) Query: 2 LEAFESAARHLSFTRAADELSFTESAISRKIALLEEYLGVQLFTRVKKRLQLTDAGKSYS 61 L +FESAARH SFT+AA+ELS T+SAI R+IA LEE+LGV+LF R ++ ++LT+AG SYS Sbjct: 11 LVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGVKLTEAGLSYS 70 Query: 62 QRVQESLDKLEMDTTLTMAHDAGRISLELAVLPTFALKWLMPRLHEFNALHPEVTIHVAA 121 +RV LD +E DT M H G ++ELAV+PTF +WL+PRL F LHPEVT+++ Sbjct: 71 RRVAVRLDAVERDTLAVMGHQGGG-AIELAVVPTFGTQWLLPRLKRFQRLHPEVTVNLTN 129 Query: 122 REEPFLFSEAPFDAAIHFDHPVWANATSTYLFTEELIPICSPQLIGGKHCRKPADLLDYV 181 R PFLF++ FDAA++F W+ S +L E +P+CSP+L+GG+ + Sbjct: 130 RTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRTLSAEQVAGLP 189 Query: 182 LMHKTGRPEAWSRWFELAGCPDAR----------------ARGGMXPGIALVPRTYVMDD 225 LM ++ RP AW +WF G A A GM G+AL+P + D+ Sbjct: 190 LMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGM--GVALIPPFLIQDE 247 Query: 226 IESGQLTVPWEMVVPGAKDYYFVVPEQKQASQGVQLFLAWLLKVAEQYRDVT 277 + G+L VP + YY ++PE++ S + F WL++ A QYR+ Sbjct: 248 LADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYREAN 299