BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0015.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003778163.1| amino acid ABC transporter periplasmic prote...   135   2e-30
ref|YP_001901088.1| putative substrate-binding periplasmic (PBP)...   130   6e-29
ref|YP_002983150.1| extracellular ligand-binding receptor [Ralst...   130   7e-29
ref|ZP_07675151.1| amino acid uptake ABC transporter [Ralstonia ...   130   7e-29
ref|YP_003750802.1| branched-chain amino acid transport system p...   130   8e-29

>ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
 emb|CAP19671.1| periplasmic component protein [Herbaspirillum seropedicae]
 gb|ADJ66255.1| ABC-type amino acid transport system, periplasmic component protein
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/109 (67%), Positives = 78/109 (71%), Gaps = 24/109 (22%)

Query: 2   AKVANEKKKVFI------------------------XVALAKGTGSAVVKQGGKSWFFLT 37
           AKVA EKKKV++                         VALAKGTGSAVVKQGGKSWFFLT
Sbjct: 114 AKVAAEKKKVYMQIGAGSARLTNEECSPYTVHYAYDTVALAKGTGSAVVKQGGKSWFFLT 173

Query: 38  ADYAFGHSLESDTSNVVKASGGTVVGSVKHPLGASDFSSFLLQVSERPA 86
           ADYAFGHSLESDT+NVVKASGGTVVG+VKHPLGASDFSSFLLQ     A
Sbjct: 174 ADYAFGHSLESDTANVVKASGGTVVGAVKHPLGASDFSSFLLQAQSSKA 222


>ref|YP_001901088.1| putative substrate-binding periplasmic (PBP) ABC transporter
           protein [Ralstonia pickettii 12J]
 gb|ACD28656.1| putative substrate-binding periplasmic (PBP) ABC transporter
           protein [Ralstonia pickettii 12J]
          Length = 402

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 77/110 (70%), Gaps = 24/110 (21%)

Query: 1   MAKVANEKKKVFI------------------------XVALAKGTGSAVVKQGGKSWFFL 36
           M KVA+EKK+VFI                         VALAKGTGSAVVKQGGKSWFFL
Sbjct: 113 MNKVASEKKRVFIDIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFL 172

Query: 37  TADYAFGHSLESDTSNVVKASGGTVVGSVKHPLGASDFSSFLLQVSERPA 86
           TADYAFGHSLE+DT+ VVKA+GGTVVGSVKHPL ASDFSS+LLQ     A
Sbjct: 173 TADYAFGHSLENDTTAVVKANGGTVVGSVKHPLSASDFSSYLLQAQSSKA 222


>ref|YP_002983150.1| extracellular ligand-binding receptor [Ralstonia pickettii 12D]
 gb|ACS64478.1| Extracellular ligand-binding receptor [Ralstonia pickettii 12D]
          Length = 402

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 77/110 (70%), Gaps = 24/110 (21%)

Query: 1   MAKVANEKKKVFI------------------------XVALAKGTGSAVVKQGGKSWFFL 36
           M KVA+EKK+VFI                         VALAKGTGSAVVKQGGKSWFFL
Sbjct: 113 MNKVASEKKRVFIDIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFL 172

Query: 37  TADYAFGHSLESDTSNVVKASGGTVVGSVKHPLGASDFSSFLLQVSERPA 86
           TADYAFGHSLE+DT+ VVKA+GGTVVGSVKHPL ASDFSS+LLQ     A
Sbjct: 173 TADYAFGHSLENDTTAVVKANGGTVVGSVKHPLSASDFSSYLLQAQSSKA 222


>ref|ZP_07675151.1| amino acid uptake ABC transporter [Ralstonia sp. 5_7_47FAA]
 gb|EFP66441.1| amino acid uptake ABC transporter [Ralstonia sp. 5_7_47FAA]
          Length = 402

 Score =  130 bits (327), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 77/110 (70%), Gaps = 24/110 (21%)

Query: 1   MAKVANEKKKVFI------------------------XVALAKGTGSAVVKQGGKSWFFL 36
           M KVA+EKK+VFI                         VALAKGTGSAVVKQGGKSWFFL
Sbjct: 113 MNKVASEKKRVFIDIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFL 172

Query: 37  TADYAFGHSLESDTSNVVKASGGTVVGSVKHPLGASDFSSFLLQVSERPA 86
           TADYAFGHSLE+DT+ VVKA+GGTVVGSVKHPL ASDFSS+LLQ     A
Sbjct: 173 TADYAFGHSLENDTTAVVKANGGTVVGSVKHPLSASDFSSYLLQAQSSKA 222


>ref|YP_003750802.1| branched-chain amino acid transport system permease, periplasmic
           component [Ralstonia solanacearum PSI07]
 emb|CBJ49480.1| putative branched-chain amino acid transport system permease,
           periplasmic component [Ralstonia solanacearum PSI07]
 emb|CCA80717.1| putative branched-chain amino acid transport system permease,
           periplasmic component [blood disease bacterium R229]
          Length = 402

 Score =  130 bits (326), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 77/110 (70%), Gaps = 24/110 (21%)

Query: 1   MAKVANEKKKVFI------------------------XVALAKGTGSAVVKQGGKSWFFL 36
           M+KVA EKK+VFI                         VALAKGTGSAVVKQGGKSWFFL
Sbjct: 113 MSKVAAEKKRVFIGIGAGTARLTNEECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFL 172

Query: 37  TADYAFGHSLESDTSNVVKASGGTVVGSVKHPLGASDFSSFLLQVSERPA 86
           TADYAFGHSLE+DT+ VVKA+GGTVVGSVKHPL ASDFSS+LLQ     A
Sbjct: 173 TADYAFGHSLENDTAAVVKANGGTVVGSVKHPLSASDFSSYLLQAQSSKA 222