BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0013.p (152 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778163.1| amino acid ABC transporter periplasmic prote... 238 2e-61 ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, a... 217 5e-55 ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, ... 213 1e-53 ref|ZP_01914818.1| ABC branched-chain amino acid family transpor... 204 2e-51 ref|ZP_08400961.1| putative substrate-binding periplasmic (pbp) ... 201 3e-50 >ref|YP_003778163.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19671.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ66255.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 402 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 128/159 (80%), Gaps = 10/159 (6%) Query: 4 FGIPLQALLSQLL--------LGLVN--GSFYADSWYWDTNEETRKFAKRYFEKQKKMPS 53 FGI A L+ LL L L N G + DSWYWD NEETR FAKRYF +KKMPS Sbjct: 244 FGITKTAKLAGLLVFINDVHSLTLKNTEGLYLTDSWYWDANEETRAFAKRYFAVRKKMPS 303 Query: 54 SLQAADYSAALQYLQAVKAAGTDDSDKVMAQLRKTKFNDVFQKNGYLRADGRVVHDMYLY 113 SLQAADYSAALQYL+ VK GTDDSDKVMA LRK KFND++QKNGYLRADGRV+HDMYLY Sbjct: 304 SLQAADYSAALQYLKVVKEIGTDDSDKVMAALRKAKFNDMYQKNGYLRADGRVMHDMYLY 363 Query: 114 QVKTPAESKYPWDYYKLVQTIPAEQAWTTKAESKCSAWK 152 QVK +ESKYPWDYYKLVQTIPAEQAWTTKAESKC+AWK Sbjct: 364 QVKAQSESKYPWDYYKLVQTIPAEQAWTTKAESKCAAWK 402 >ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33985.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 409 Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 94/134 (70%), Positives = 115/134 (85%) Query: 19 LVNGSFYADSWYWDTNEETRKFAKRYFEKQKKMPSSLQAADYSAALQYLQAVKAAGTDDS 78 L G + DSWYWD N+E+RK+++RYFEK KKMPSSLQAADYSA L YL AVKA G+DD+ Sbjct: 276 LTQGMYLTDSWYWDQNDESRKWSRRYFEKMKKMPSSLQAADYSATLTYLNAVKATGSDDT 335 Query: 79 DKVMAQLRKTKFNDVFQKNGYLRADGRVVHDMYLYQVKTPAESKYPWDYYKLVQTIPAEQ 138 DKVMAQ+RKTK ND++ KNG +R DG ++HDMYL QVK+P ESKYPWDYYK++QTIP EQ Sbjct: 336 DKVMAQMRKTKINDMYAKNGMIRDDGSMIHDMYLMQVKSPTESKYPWDYYKVIQTIPGEQ 395 Query: 139 AWTTKAESKCSAWK 152 A+TTKAE+KC++WK Sbjct: 396 AFTTKAETKCASWK 409 >ref|YP_004755053.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] gb|AEK64230.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Collimonas fungivorans Ter331] Length = 408 Score = 213 bits (541), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/160 (64%), Positives = 119/160 (74%), Gaps = 12/160 (7%) Query: 4 FGIPLQALLSQLLLGLVN-----------GSFYADSWYWDTNEETRKFAKRYFEKQKKMP 52 FG+ A L+ LL+ +N G + DSWYWD N+E+RK+AKRYFEK KK P Sbjct: 250 FGVTKNAKLAGLLV-FINDIHSLTLKQTQGMYLTDSWYWDQNDESRKWAKRYFEKMKKEP 308 Query: 53 SSLQAADYSAALQYLQAVKAAGTDDSDKVMAQLRKTKFNDVFQKNGYLRADGRVVHDMYL 112 SSLQA DYSAA+QYL AVK GTDD DKVM QLRK KFND++ KN YLRADGRVVHDM L Sbjct: 309 SSLQAGDYSAAMQYLAAVKTIGTDDGDKVMEQLRKAKFNDMYAKNAYLRADGRVVHDMTL 368 Query: 113 YQVKTPAESKYPWDYYKLVQTIPAEQAWTTKAESKCSAWK 152 YQVK PA+SKYPWDY +QTIP EQA+ +KAESKC+ WK Sbjct: 369 YQVKAPADSKYPWDYLNKIQTIPGEQAFASKAESKCALWK 408 >ref|ZP_01914818.1| ABC branched-chain amino acid family transporter, periplasmic ligand binding protein [Limnobacter sp. MED105] gb|EDM84134.1| ABC branched-chain amino acid family transporter, periplasmic ligand binding protein [Limnobacter sp. MED105] Length = 401 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 95/138 (68%), Positives = 109/138 (78%) Query: 15 LLLGLVNGSFYADSWYWDTNEETRKFAKRYFEKQKKMPSSLQAADYSAALQYLQAVKAAG 74 L LG G + DSWYWD N+ETRK++KR+F+K KKMPSSLQAADYSA LQYL AVKAAG Sbjct: 264 LGLGQTKGMYLTDSWYWDQNDETRKWSKRFFDKMKKMPSSLQAADYSATLQYLNAVKAAG 323 Query: 75 TDDSDKVMAQLRKTKFNDVFQKNGYLRADGRVVHDMYLYQVKTPAESKYPWDYYKLVQTI 134 TDD KVM LRK K NDV+ KNGY R DG ++HDM+L QVK P ESK PWDY K+VQ I Sbjct: 324 TDDGAKVMEALRKQKVNDVYAKNGYYRVDGSMIHDMFLMQVKDPKESKKPWDYLKVVQAI 383 Query: 135 PAEQAWTTKAESKCSAWK 152 P EQA+TTKAE+KC+ WK Sbjct: 384 PGEQAFTTKAETKCALWK 401 >ref|ZP_08400961.1| putative substrate-binding periplasmic (pbp) ABC transporter protein [Rubrivivax benzoatilyticus JA2] gb|EGJ09294.1| putative substrate-binding periplasmic (pbp) ABC transporter protein [Rubrivivax benzoatilyticus JA2] Length = 402 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/159 (59%), Positives = 116/159 (72%), Gaps = 10/159 (6%) Query: 4 FGIPLQALLSQLL--------LGL--VNGSFYADSWYWDTNEETRKFAKRYFEKQKKMPS 53 FGI L+ LL LGL G + DSWYW+ + ETR + +R+FEK K+MPS Sbjct: 244 FGITKSMKLAGLLVFINDIHSLGLKTTQGMYLTDSWYWNRDAETRAWGRRFFEKMKRMPS 303 Query: 54 SLQAADYSAALQYLQAVKAAGTDDSDKVMAQLRKTKFNDVFQKNGYLRADGRVVHDMYLY 113 SLQA DYSAA QYL AVKA GTDD+DKV+AQ+RKT+ ND+F K+G++R DGR+VHDMYL Sbjct: 304 SLQAGDYSAATQYLAAVKATGTDDADKVLAQMRKTRVNDIFAKDGFIRGDGRMVHDMYLM 363 Query: 114 QVKTPAESKYPWDYYKLVQTIPAEQAWTTKAESKCSAWK 152 QVK P +S PWDYY +VQT E+AWTTKAESKC+ WK Sbjct: 364 QVKAPDKSVEPWDYYNVVQTFKGEEAWTTKAESKCALWK 402