BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0008.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004847945.1| LysR family transcriptional regulator [Pseud... 302 5e-80 ref|ZP_03697981.1| transcriptional regulator, LysR family [Lutie... 299 4e-79 ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudom... 292 4e-77 ref|NP_249139.1| transcriptional regulator [Pseudomonas aerugino... 291 6e-77 ref|ZP_04936866.1| hypothetical protein PA2G_04363 [Pseudomonas ... 291 6e-77 >ref|YP_004847945.1| LysR family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK77531.1| transcriptional regulator, LysR family [Pseudogulbenkiania sp. NH8B] Length = 302 Score = 302 bits (773), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 145/295 (49%), Positives = 203/295 (68%) Query: 1 MRRKIPSITALMAFEAAARYQSFSRAADALSLTEGAISRQIAGLEEFLDLLLFHRVKKRV 60 MRRKIPSI AL AFEAAAR+QSF+RAA+ L+LT+ A+ +QIA LEE L + LF+R+K+RV Sbjct: 1 MRRKIPSIEALQAFEAAARHQSFTRAAEELALTQSAVCKQIATLEEMLGIALFNRIKRRV 60 Query: 61 QLTDIGKAYFAHVREDLNRLERNTLSAMAYQDGQQILELAVIPTFATKWLIPRLSEFSRL 120 L++ G+ Y VRE L+RLER+TLS MA+Q ++ELA IPTFAT+WLIPRL F Sbjct: 61 SLSEAGQVYAREVREHLDRLERSTLSIMAHQGSGGVIELAAIPTFATRWLIPRLPGFYAE 120 Query: 121 HPEIVVNLSERALPFLFGDSVFDAAVHYEHPAWAGNAQELLFEEELVPVCSPQLLGGKTA 180 HP I +N++ R+ F+F D+VFDA++H+ W G + LF EE++PVCSPQLL Sbjct: 121 HPNITINITTRSDTFIFADTVFDASIHFGTGVWPGAHADHLFGEEMIPVCSPQLLARHPC 180 Query: 181 LSIDELAAYPLLQKNTREDVWRHWFDMQGFQGRNPVGGPRHDLFSMIIQAACYGRGIALV 240 L +L LL + R D W WF G N + GPR++LFSM+++AA G+ALV Sbjct: 181 LQPQDLVKLKLLHLSARHDAWHKWFAAAGASDLNAMVGPRYELFSMLVEAARAQMGVALV 240 Query: 241 PRLYVEDELRSGALLIPLDRPIRGLKKYCVVYPEHEEASPTLKLFIAWLMQAARE 295 PR V++E+RSG+L+ P D P++ Y +VYPE ++ + L+ F++WL++ A + Sbjct: 241 PRFLVQEEIRSGSLVTPFDIPMQSEMGYFLVYPESKQEAKVLQAFVSWLLEQAEQ 295 >ref|ZP_03697981.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] gb|EEG08723.1| transcriptional regulator, LysR family [Lutiella nitroferrum 2002] Length = 302 Score = 299 bits (765), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 144/295 (48%), Positives = 202/295 (68%) Query: 1 MRRKIPSITALMAFEAAARYQSFSRAADALSLTEGAISRQIAGLEEFLDLLLFHRVKKRV 60 MRRKIPSI AL AFEAAAR+QSF+RAA+ L+LT+ A+ +QIA LEE L + LF+R+K+RV Sbjct: 1 MRRKIPSIEALQAFEAAARHQSFTRAAEELALTQSAVCKQIATLEEMLGIALFNRIKRRV 60 Query: 61 QLTDIGKAYFAHVREDLNRLERNTLSAMAYQDGQQILELAVIPTFATKWLIPRLSEFSRL 120 L++ G+ Y VRE L+RLER+TLS MA+Q ++ELA IPTFAT+WLIPRL F Sbjct: 61 SLSEAGQVYAREVREHLDRLERSTLSIMAHQGSGGVIELAAIPTFATRWLIPRLPGFYAE 120 Query: 121 HPEIVVNLSERALPFLFGDSVFDAAVHYEHPAWAGNAQELLFEEELVPVCSPQLLGGKTA 180 HP I +N++ R+ F+F D+VFDA++H+ W G + LF EE++PVCSPQLL Sbjct: 121 HPNITINITTRSDTFIFADTVFDASIHFGTGVWPGAHADHLFGEEMIPVCSPQLLARHPC 180 Query: 181 LSIDELAAYPLLQKNTREDVWRHWFDMQGFQGRNPVGGPRHDLFSMIIQAACYGRGIALV 240 +L LL + R D W WF G N + GPR++LFSM+++AA G+ALV Sbjct: 181 PQPQDLVKLKLLHLSARHDAWHKWFAAAGASDLNAMVGPRYELFSMLVEAARAQMGVALV 240 Query: 241 PRLYVEDELRSGALLIPLDRPIRGLKKYCVVYPEHEEASPTLKLFIAWLMQAARE 295 PR V++E+RSG+L+ P D P++ Y +VYPE ++ + L+ F++WL++ A + Sbjct: 241 PRFLVQEEIRSGSLVTPFDIPMQSEMGYFLVYPESKQEAKVLQAFVSWLLEQAEQ 295 >ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudomonas aeruginosa PACS2] ref|YP_788621.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002438052.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] ref|ZP_04930644.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719] ref|ZP_06876444.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gb|ABJ15413.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ54763.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719] emb|CAW25171.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gb|EGM21129.1| putative transcriptional regulator [Pseudomonas aeruginosa 152504] gb|AEO72935.1| putative transcriptional regulator [Pseudomonas aeruginosa M18] Length = 302 Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 142/295 (48%), Positives = 198/295 (67%), Gaps = 1/295 (0%) Query: 1 MRRKIPSITALMAFEAAARYQSFSRAADALSLTEGAISRQIAGLEEFLDLLLFHRVKKRV 60 MRRKIPS AL++FE+AAR++SF++AA+ LSLT+ AI RQIA LEEFL + LF R ++ V Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 QLTDIGKAYFAHVREDLNRLERNTLSAMAYQDGQQILELAVIPTFATKWLIPRLSEFSRL 120 +LT+ G +Y V L+ +ER+TL+ M +Q G I ELAV+PTF T+WL+PRL F RL Sbjct: 61 KLTEAGLSYSRRVAVRLDAVERDTLAVMGHQGGGAI-ELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 HPEIVVNLSERALPFLFGDSVFDAAVHYEHPAWAGNAQELLFEEELVPVCSPQLLGGKTA 180 HPE+ VNL+ R PFLF D+ FDAA+++ W+G L E VPVCSP+LLGG+ Sbjct: 120 HPEVTVNLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 LSIDELAAYPLLQKNTREDVWRHWFDMQGFQGRNPVGGPRHDLFSMIIQAACYGRGIALV 240 LS +++A PL+Q++TR WR WF QG + + GPR++LFSM+ QAA +G G+AL+ Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 241 PRLYVEDELRSGALLIPLDRPIRGLKKYCVVYPEHEEASPTLKLFIAWLMQAARE 295 P ++DEL G L++P+ Y ++ PE S L F WL++ AR+ Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQ 294 >ref|NP_249139.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] ref|ZP_07797716.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gb|AAG03837.1|AE004482_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gb|EFQ42812.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gb|EGM20783.1| transcriptional regulator [Pseudomonas aeruginosa 138244] dbj|GAA19462.1| probable transcriptional regulator [Pseudomonas aeruginosa NCMG1179] dbj|BAK92561.1| LysR family transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 302 Score = 291 bits (746), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 141/295 (47%), Positives = 198/295 (67%), Gaps = 1/295 (0%) Query: 1 MRRKIPSITALMAFEAAARYQSFSRAADALSLTEGAISRQIAGLEEFLDLLLFHRVKKRV 60 MRRKIPS AL++FE+AAR++SF++AA+ LSLT+ AI RQIA LEEFL + LF R ++ V Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 QLTDIGKAYFAHVREDLNRLERNTLSAMAYQDGQQILELAVIPTFATKWLIPRLSEFSRL 120 +LT+ G +Y V L+ +ER+TL+ M +Q G I ELAV+PTF T+WL+PRL F RL Sbjct: 61 KLTEAGLSYSRRVAVRLDAVERDTLAVMGHQGGGAI-ELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 HPEIVVNLSERALPFLFGDSVFDAAVHYEHPAWAGNAQELLFEEELVPVCSPQLLGGKTA 180 HPE+ +NL+ R PFLF D+ FDAA+++ W+G L E VPVCSP+LLGG+ Sbjct: 120 HPEVTINLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 LSIDELAAYPLLQKNTREDVWRHWFDMQGFQGRNPVGGPRHDLFSMIIQAACYGRGIALV 240 LS +++A PL+Q++TR WR WF QG + + GPR++LFSM+ QAA +G G+AL+ Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 241 PRLYVEDELRSGALLIPLDRPIRGLKKYCVVYPEHEEASPTLKLFIAWLMQAARE 295 P ++DEL G L++P+ Y ++ PE S L F WL++ AR+ Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQ 294 >ref|ZP_04936866.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192] gb|EAZ60985.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192] Length = 302 Score = 291 bits (746), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 142/295 (48%), Positives = 197/295 (66%), Gaps = 1/295 (0%) Query: 1 MRRKIPSITALMAFEAAARYQSFSRAADALSLTEGAISRQIAGLEEFLDLLLFHRVKKRV 60 MRRKIPS AL++FE+AAR++SF++AA+ LSLT+ AI RQIA LEEFL + LF R ++ V Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 QLTDIGKAYFAHVREDLNRLERNTLSAMAYQDGQQILELAVIPTFATKWLIPRLSEFSRL 120 +LT+ G Y V L+ +ER+TL+ M +Q G I ELAV+PTF T+WL+PRL F RL Sbjct: 61 KLTEAGLTYSRRVAVRLDAVERDTLAVMGHQGGGAI-ELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 HPEIVVNLSERALPFLFGDSVFDAAVHYEHPAWAGNAQELLFEEELVPVCSPQLLGGKTA 180 HPE+ VNL+ R PFLF D+ FDAA+++ W+G L E VPVCSP+LLGG+ Sbjct: 120 HPEVTVNLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 LSIDELAAYPLLQKNTREDVWRHWFDMQGFQGRNPVGGPRHDLFSMIIQAACYGRGIALV 240 LS +++A PL+Q++TR WR WF QG + + GPR++LFSM+ QAA +G G+AL+ Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 241 PRLYVEDELRSGALLIPLDRPIRGLKKYCVVYPEHEEASPTLKLFIAWLMQAARE 295 P ++DEL G L++P+ Y ++ PE S L F WL++ AR+ Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQ 294