BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0005.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_725997.1| putative aspartate oxidase [Ralstonia eutropha ... 336 3e-90 ref|YP_004682811.1| fumarate reductase flavoprotein subunit [Cup... 292 5e-77 ref|YP_004348258.1| putative aspartate oxidase [Burkholderia gla... 287 2e-75 ref|YP_004687999.1| fumarate reductase flavoprotein subunit [Cup... 286 2e-75 gb|AAZ93599.1| putative succinate dehydrogenase/fumarate reducta... 242 6e-62 >ref|YP_725997.1| putative aspartate oxidase [Ralstonia eutropha H16] emb|CAJ92629.1| putative aspartate oxidase [Ralstonia eutropha H16] Length = 489 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 169/248 (68%), Positives = 203/248 (81%), Gaps = 1/248 (0%) Query: 21 ANCDLLVIGSGISGLSAAVSAAAAGARVLVLERSVREEFGGNTRWTESYFRMKSDTEVSD 80 A D++VIG GISGLSAAV+AA GARV VLER+ R E+GGNTRWTE+YFRMKSDTEVSD Sbjct: 8 AYYDVVVIGCGISGLSAAVAAAGKGARVAVLERATRAEYGGNTRWTEAYFRMKSDTEVSD 67 Query: 81 DFEERLISNAGYNLDPNIIREVSGEYATWPSFVKAHGMPDPELISTLSEQAGPTVQWLKG 140 DF++ L +NAG NLDPN++R ++ YA WP++VKAHGMPDPEL+STLS +AGPTVQWL+ Sbjct: 68 DFDDLLSANAGDNLDPNVVRSMAAPYAEWPAYVKAHGMPDPELLSTLSCEAGPTVQWLQT 127 Query: 141 FGVRFDTLPTYFVTAAAPRLMPIGGGLAMIEALLAHAQKIGVEFRYETTATKME-RGLDQ 199 FG+RFD LPTYFVTAAAPRLMP+GGGLAMIEAL A A +GV+F YETTA + R + Sbjct: 128 FGIRFDALPTYFVTAAAPRLMPVGGGLAMIEALHARAGDLGVKFYYETTANSLSRRDANG 187 Query: 200 VFGVTVTGPDGRQEVLRAANVMIASGGFEGNPEMLTQYLGNSARFVRPVARGGYYNRGEG 259 + + G DG L +V+IASGGFEGNPEMLTQY+G +AR++RPVARGGYYN+GEG Sbjct: 188 QLRLGLVGADGNAFELLGRSVVIASGGFEGNPEMLTQYMGPAARYIRPVARGGYYNKGEG 247 Query: 260 IRMALDAG 267 IRMAL+ G Sbjct: 248 IRMALNLG 255 >ref|YP_004682811.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] gb|AEI82963.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] Length = 487 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 134/248 (54%), Positives = 184/248 (74%), Gaps = 1/248 (0%) Query: 21 ANCDLLVIGSGISGLSAAVSAAAAGARVLVLERSVREEFGGNTRWTESYFRMKSDTEVSD 80 ++ D+L++G G++GLSAAV+A AG +V+ LERS +FGGN+RWTE+Y RMK+DTE+SD Sbjct: 5 SDADVLIVGCGVAGLSAAVTALEAGLKVINLERSDESQFGGNSRWTEAYMRMKNDTEISD 64 Query: 81 DFEERLISNAGYNLDPNIIREVSGEYATWPSFVKAHGMPDPELISTLSEQAGPTVQWLKG 140 DFEE +NAG+N+DPN++ ++ YA WPSFVK+H +PDPE+IS + PT+ WLKG Sbjct: 65 DFEEHFANNAGWNIDPNVLDALTDSYANWPSFVKSHSLPDPEVISAFANSVPPTISWLKG 124 Query: 141 FGVRFDTLPTYFVTAAAPRLMPIGGGLAMIEALLAHAQKIGVEFRYETTATKMERGLD-Q 199 G++F+ P Y +T R+ GGGLA+IEAL A A +G E RY TTAT + R + Sbjct: 125 LGLKFEPQPIYLLTQNTTRIAAKGGGLAIIEALRAKALALGGEIRYRTTATDLVRNDNGA 184 Query: 200 VFGVTVTGPDGRQEVLRAANVMIASGGFEGNPEMLTQYLGNSARFVRPVARGGYYNRGEG 259 G+ +T PDG + L A +V++ASGGF+GNPEM+T+Y+G A+ +RPVA GGYYNRGEG Sbjct: 185 ACGLVITTPDGVRSQLLAKHVVLASGGFQGNPEMMTKYVGPRAKHIRPVAIGGYYNRGEG 244 Query: 260 IRMALDAG 267 I+MAL+AG Sbjct: 245 IQMALNAG 252 >ref|YP_004348258.1| putative aspartate oxidase [Burkholderia gladioli BSR3] gb|AEA62746.1| putative aspartate oxidase [Burkholderia gladioli BSR3] Length = 495 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 156/244 (63%), Positives = 186/244 (76%), Gaps = 1/244 (0%) Query: 24 DLLVIGSGISGLSAAVSAAAAGARVLVLERSVREEFGGNTRWTESYFRMKSDTEVSDDFE 83 D+ V+G+GISGLS AV+AAAAGA V VLER+ +EFGGNTRWTE+YFRM S+ EVS DFE Sbjct: 10 DVTVVGAGISGLSVAVAAAAAGAHVAVLERATEDEFGGNTRWTEAYFRMSSEDEVSADFE 69 Query: 84 ERLISNAGYNLDPNIIREVSGEYATWPSFVKAHGMPDPELISTLSEQAGPTVQWLKGFGV 143 ERL NAG +LDP I+ ++ PSFV+AHGMPDPELI+ L+ +A TV+WLK FGV Sbjct: 70 ERLAENAGDHLDPYIVEQIVQPDHLRPSFVRAHGMPDPELIAELANRAPETVKWLKTFGV 129 Query: 144 RFDTLPTYFVTAAAPRLMPIGGGLAMIEALLAHAQKIGVEFRYETTATKMERGLDQVFGV 203 RFD LPTYF+TAAAPRLMP+GGGLA+IEAL AHA + GVE YET+A + R F + Sbjct: 130 RFDLLPTYFLTAAAPRLMPVGGGLALIEALRAHALRSGVEIFYETSARSLSRERGGAFHL 189 Query: 204 TVTGPDGRQEVLRAANVMIASGGFEGNPEMLTQYLGNSARFVRPVARGGYYNRGEGIRMA 263 G G V +A V++ SGGFEGNPEML +YLG AR+VRPVARGGY NRGEGIRMA Sbjct: 190 VGAGRHG-DVVFGSAAVVLCSGGFEGNPEMLARYLGGVARYVRPVARGGYQNRGEGIRMA 248 Query: 264 LDAG 267 L+ G Sbjct: 249 LELG 252 >ref|YP_004687999.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] gb|AEI81961.1| fumarate reductase flavoprotein subunit [Cupriavidus necator N-1] Length = 487 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 132/247 (53%), Positives = 181/247 (73%), Gaps = 1/247 (0%) Query: 22 NCDLLVIGSGISGLSAAVSAAAAGARVLVLERSVREEFGGNTRWTESYFRMKSDTEVSDD 81 + D++++G G++GLSAAV+A AG +V+ LERS FGGN+RWTE+Y RMK+D+E+S D Sbjct: 6 DADVVIVGCGVAGLSAAVTALEAGLKVINLERSDESHFGGNSRWTEAYMRMKNDSEISAD 65 Query: 82 FEERLISNAGYNLDPNIIREVSGEYATWPSFVKAHGMPDPELISTLSEQAGPTVQWLKGF 141 FEE +NAG+N+DPN++ ++ YA WPSFVK+H +PDPE+IS + PT+ WLKG Sbjct: 66 FEEHFANNAGWNIDPNVLDALTDSYADWPSFVKSHSLPDPEVISAFANSVPPTISWLKGL 125 Query: 142 GVRFDTLPTYFVTAAAPRLMPIGGGLAMIEALLAHAQKIGVEFRYETTATKMERGLD-QV 200 G++F+ P Y +T R+ GGGLA+IEAL A A +G E RY TTAT + R + Sbjct: 126 GLKFEPQPIYLLTQNTTRIAAKGGGLAIIEALRAKALALGGEIRYRTTATDLVRNDNGAA 185 Query: 201 FGVTVTGPDGRQEVLRAANVMIASGGFEGNPEMLTQYLGNSARFVRPVARGGYYNRGEGI 260 GV +T PDG + L A +V++ASGGF+GNPEM+T+Y+G A+ +RPVA GGYYNRGEGI Sbjct: 186 CGVVITNPDGVRSQLLAKHVVLASGGFQGNPEMMTKYVGPRAKHIRPVAIGGYYNRGEGI 245 Query: 261 RMALDAG 267 +MAL+AG Sbjct: 246 QMALNAG 252 >gb|AAZ93599.1| putative succinate dehydrogenase/fumarate reductase flavoprotein subunit [Paracoccus pantotrophus] Length = 487 Score = 242 bits (618), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 123/245 (50%), Positives = 167/245 (68%), Gaps = 2/245 (0%) Query: 24 DLLVIGSGISGLSAAVSAAAAGARVLVLERSVREEFGGNTRWTESYFRMKSDTEVSDDFE 83 D++V+G GI+GLSAAV+AA GA+V VL+R+ +E GGNTRWTE++ RMKS EV+DDF Sbjct: 6 DVVVVGCGIAGLSAAVAAAEGGAKVAVLDRASFDERGGNTRWTEAFMRMKSIDEVADDFA 65 Query: 84 ERLISNAGYNLDPNIIREVSGEYATWPSFVKAHGMPDPELISTLSEQAGPTVQWLKGFGV 143 E + NAG +LDP II+E + Y W VKAHG DPE+I L E A T+ WL G G+ Sbjct: 66 EHFMDNAGSHLDPEIIKEAARPYEDWSPIVKAHGFTDPEVIGRLVEDAPSTLNWLTGLGI 125 Query: 144 RFDTLPTYFVTAAAPRLMPIGGGLAMIEALLAHAQKIGVEFRYETTATKM-ERGLDQVFG 202 F +PTY +T + R+ PIGGGLA++E L A+ +GV F +ET A ++ + L V G Sbjct: 126 TFTDMPTYLLTQSTTRICPIGGGLALVEVLTKKAEDLGVTFHFETAARRLTQDALGTVTG 185 Query: 203 VTVTGPDGRQEVLRAANVMIASGGFEGNPEMLTQYLGNSARFVRPVARGGYYNRGEGIRM 262 + G +++ V++A GG++GN EM +Y G AR++RP+ARGGYYNRGEGI+M Sbjct: 186 LLADNAKG-EKLAFTGKVILACGGYQGNAEMQARYFGERARYIRPIARGGYYNRGEGIQM 244 Query: 263 ALDAG 267 ALD G Sbjct: 245 ALDVG 249