BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0106.p (348 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776007.1| glycine cleavage system protein T [Herbaspir... 446 e-123 ref|YP_004752472.1| putative aminomethyltransferase [Collimonas ... 436 e-120 ref|YP_001353678.1| glycine cleavage T protein [Janthinobacteriu... 433 e-119 ref|YP_001099693.1| hypothetical protein HEAR1394 [Herminiimonas... 388 e-105 ref|ZP_08275261.1| Folate-dependent protein for Fe/S cluster syn... 379 e-103 >ref|YP_003776007.1| glycine cleavage system protein T [Herbaspirillum seropedicae SmR1] gb|ADJ64099.1| glycine cleavage T (aminomethyltransferase) protein [Herbaspirillum seropedicae SmR1] Length = 360 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 228/365 (62%), Positives = 266/365 (72%), Gaps = 22/365 (6%) Query: 1 MTDPTPARSAWHTFLDQQGSHINADAG--------------ALLP---DNFVAPLNDLGL 43 MT+ T + SAW FL QQG+ AD+ A P ++F+APL LGL Sbjct: 1 MTEMTSSPSAWRDFLAQQGAQFEADSAEPVDHADVIGFAPTAAAPQSLESFMAPLTSLGL 60 Query: 44 ISLTGDDAASFLHNQITNDVEKLDLASVRLAGYCTPKGRLLATFLMWKDADQIVLQLPRT 103 I++TG+DAASFLH Q+TNDV+ LD S RLAGYC+PKGRLLATFLMW+D LQLPR+ Sbjct: 61 IAVTGEDAASFLHGQLTNDVQHLDTGSARLAGYCSPKGRLLATFLMWRDDQASWLQLPRS 120 Query: 104 LQPAIQKRLQMFVLRAKAKLADISEQRVALGLAGNTAAAALQQWFPQLPAQPYGKTDNEH 163 LQPAIQKRLQMFV+RAKAKLAD S +R LGLAG A AL +WFP LPA PY K DN H Sbjct: 121 LQPAIQKRLQMFVMRAKAKLADASTERGVLGLAGPATANALAEWFPVLPAAPYDKIDNSH 180 Query: 164 GTLLRVADSRGAPRFQWITTEEQAIAAWPLLAQKLTVADAHAWRLSDIYAGVPTITQPTQ 223 GTL+R+AD+ G+PR+QWI + AAWP LAQ LT + AWRLS+I AGVP I TQ Sbjct: 181 GTLIRLADAAGSPRYQWIAAIDTLTAAWPRLAQHLTPTASLAWRLSEIRAGVPGIVAATQ 240 Query: 224 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRSVLALVAAGQVAAGTEVFS 283 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRR++LA + + AG EVF+ Sbjct: 241 EQFVPQMINFELIGGVNFKKGCYPGQEIVARSQYLGKLKRRTMLATIDSAAARAGQEVFA 300 Query: 284 SADPGQPCGMVVNAEPXKKKKKKKNSACLVEIKLAAAESGSIHLGSVDGPALQLQTLPYE 343 +ADPGQPCGMVVNAE ++ LVE+KLAAAE ++HLG+ DGPAL LPYE Sbjct: 301 AADPGQPCGMVVNAEAL----DDGHALALVEMKLAAAED-AVHLGAADGPALHFHALPYE 355 Query: 344 LTDPQ 348 L DPQ Sbjct: 356 LADPQ 360 >ref|YP_004752472.1| putative aminomethyltransferase [Collimonas fungivorans Ter331] gb|AEK61649.1| putative aminomethyltransferase [Collimonas fungivorans Ter331] Length = 350 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 231/345 (66%), Positives = 261/345 (75%), Gaps = 15/345 (4%) Query: 9 SAWHTFLDQQGSHI---NADAGALLPDNFVAPLNDLGLISLTGDDAASFLHNQITNDVEK 65 S W F QQ A AGA +FVAPL DLGLI+ +G+DAASFLH Q+TNDV+ Sbjct: 6 STWLDFSQQQSFDALPATATAGA----SFVAPLTDLGLIAFSGEDAASFLHTQLTNDVQN 61 Query: 66 LDLASVRLAGYCTPKGRLLATFLMWKDADQIVLQLPRTLQPAIQKRLQMFVLRAKAKLAD 125 L RLAGYC+PKGRLLATFLMWK D I+LQLPR+LQ AIQKRLQMFV+RAKAK AD Sbjct: 62 LPAGQARLAGYCSPKGRLLATFLMWKSGDSILLQLPRSLQAAIQKRLQMFVMRAKAKPAD 121 Query: 126 ISEQRVALGLAGNTAAAALQQWFPQLPAQPYGKTDNEHGTLLRVADSR----GAPRFQWI 181 +S+ ++ LGLAGN A AAL WFP LPA+PY K DNEHGTL+RVAD+ PR+QWI Sbjct: 122 VSDTQIILGLAGNAAGAALAPWFPALPAEPYAKLDNEHGTLIRVADADTGTGSVPRYQWI 181 Query: 182 TTEEQAIAAWPLLAQKLTVADAHAWRLSDIYAGVPTITQPTQEQFVPQMINFELIGGVNF 241 T+ E AIAAWP L + L A AWRL DI AGVP IT PTQEQFVPQMINFE+IGGVNF Sbjct: 182 TSPEHAIAAWPQLGKNLQPVAASAWRLGDILAGVPQITLPTQEQFVPQMINFEVIGGVNF 241 Query: 242 KKGCYPGQEIVARSQYLGKLKRRSVLALVAAGQVAAGTEVFSSADPGQPCGMVVNAEPXK 301 KKGCYPGQEIVARSQYLGKLKRR+VLA VAA +AAGTEVFSSADP QPCGM+VNAE Sbjct: 242 KKGCYPGQEIVARSQYLGKLKRRAVLASVAATGIAAGTEVFSSADPDQPCGMIVNAE--- 298 Query: 302 KKKKKKNSACLVEIKLAAAESGSIHLGSVDGPALQLQTLPYELTD 346 +S CL+EIKLAA E+G++HLGS GP LQ Q LPY + D Sbjct: 299 -ADSAGSSRCLLEIKLAALENGTVHLGSTAGPQLQFQALPYSIVD 342 >ref|YP_001353678.1| glycine cleavage T protein [Janthinobacterium sp. Marseille] gb|ABR89841.1| glycine cleavage T protein [Janthinobacterium sp. Marseille] Length = 349 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 221/351 (62%), Positives = 260/351 (74%), Gaps = 17/351 (4%) Query: 9 SAWHTFLDQQGSHINADA-------GALLP-----DNFVAPLNDLGLISLTGDDAASFLH 56 + W TFL QG++I+ DA GA +P NF+APL LGLI+ +GDDAA+FLH Sbjct: 2 TTWLTFLADQGANISDDAAPRIVSFGAEIPGETAKTNFIAPLTHLGLIAASGDDAANFLH 61 Query: 57 NQITNDVEKLDLASVRLAGYCTPKGRLLATFLMWKDADQIVLQLPRTLQPAIQKRLQMFV 116 NQ+TNDVE L + RLAGYC+PKGRLLA+FL W+ AD+I+LQLPR LQ IQKRLQMF+ Sbjct: 62 NQLTNDVEHLGSSEARLAGYCSPKGRLLASFLYWQTADRIMLQLPRELQATIQKRLQMFI 121 Query: 117 LRAKAKLADISEQRVALGLAGNTAAAALQQWFPQLPAQPYGKTDNEHGTLLRVADSRGAP 176 LRAKAKLAD+SE+ V LG+AG AA+AL WFP LP YGK DNE GT++R +++ P Sbjct: 122 LRAKAKLADVSEEYVMLGIAGPAAASALMPWFPTLPVAIYGKVDNEAGTVIRHSNAFEVP 181 Query: 177 RFQWITTEEQAIAAWPLLAQKLTVADAHAWRLSDIYAGVPTITQPTQEQFVPQMINFELI 236 R+QWITT EQAI AWP L + L + A AW L++I GVP IT TQEQFVPQMINFEL+ Sbjct: 182 RYQWITTVEQAIEAWPHLTEILQASGADAWHLAEIDGGVPHITAATQEQFVPQMINFELL 241 Query: 237 GGVNFKKGCYPGQEIVARSQYLGKLKRRSVLALVAAGQVAAGTEVFSSADPGQPCGMVVN 296 GGVNFKKGCYPGQEIVARSQYLGKLKRR + A V A QVA GTE+FS+ DP QPCGMVVN Sbjct: 242 GGVNFKKGCYPGQEIVARSQYLGKLKRRMLHASVTATQVAPGTEIFSANDPDQPCGMVVN 301 Query: 297 AEPXKKKKKKKNSACLVEIKLAAAESGSIHLGSVDGPALQLQTLPYELTDP 347 AE + S CLVEIKLAA ++ +HLGS GP L Q LPY LTDP Sbjct: 302 AE----RSGADISDCLVEIKLAATDA-PVHLGSASGPLLSFQPLPYPLTDP 347 >ref|YP_001099693.1| hypothetical protein HEAR1394 [Herminiimonas arsenicoxydans] emb|CAL61566.1| putative Glycine cleavage T protein (aminomethyl transferase) [Herminiimonas arsenicoxydans] Length = 352 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 208/355 (58%), Positives = 250/355 (70%), Gaps = 21/355 (5%) Query: 9 SAWHTFLDQQGS---------------HINADAGALLP-DNFVAPLNDLGLISLTGDDAA 52 + W FL +QG+ H A + P +FVAP+ LGLI+ +GD+AA Sbjct: 2 TTWLNFLAEQGAQFGTSGSAEAVPELLHFGAQMTSETPRTDFVAPIIYLGLIAASGDEAA 61 Query: 53 SFLHNQITNDVEKLDLASVRLAGYCTPKGRLLATFLMWKDADQIVLQLPRTLQPAIQKRL 112 FLH+Q+TNDVE LD + RLAGYC+PKGRLLA+ L+WK AD I+LQLPR LQ ++QKRL Sbjct: 62 HFLHSQLTNDVEHLDAGAARLAGYCSPKGRLLASLLIWKTADGIMLQLPRELQASVQKRL 121 Query: 113 QMFVLRAKAKLADISEQRVALGLAGNTAAAALQQWFPQLPAQPYGKTDNEHGTLLRVADS 172 QMFVLRAKA+L D +E V LGLAG A+ LQQWFP LPA Y K ++ GTL+R D+ Sbjct: 122 QMFVLRAKARLIDATENHVMLGLAGPAASKVLQQWFPVLPAAIYDKAESAAGTLIRHPDA 181 Query: 173 RGAPRFQWITTEEQAIAAWPLLAQKLTVADAHAWRLSDIYAGVPTITQPTQEQFVPQMIN 232 G R+QWITT QA+ AWP L + L A A AW+L++I +GVP I+ TQE+FVPQMIN Sbjct: 182 FGTARYQWITTAAQAVEAWPQLTKVLQAAGAAAWQLAEIDSGVPHISIATQEKFVPQMIN 241 Query: 233 FELIGGVNFKKGCYPGQEIVARSQYLGKLKRRSVLALVAAGQVAAGTEVFSSADPGQPCG 292 FELIGGVNF+KGCYPGQEIVARSQYLGKLKRR + A V+A GTE+FS +DP QPCG Sbjct: 242 FELIGGVNFRKGCYPGQEIVARSQYLGKLKRRMLHAKVSAASAEPGTEIFSVSDPEQPCG 301 Query: 293 MVVNAEPXKKKKKKKNSACLVEIKLAAAESGSIHLGSVDGPALQLQTLPYELTDP 347 MVVNAE + + ACLVEIKLAAAES + LGS GP L Q LPY LTDP Sbjct: 302 MVVNAE----RTNAQEIACLVEIKLAAAES-EVRLGSAQGPVLLFQPLPYPLTDP 351 >ref|ZP_08275261.1| Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress [Oxalobacteraceae bacterium IMCC9480] gb|EGF31267.1| Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress [Oxalobacteraceae bacterium IMCC9480] Length = 334 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/336 (58%), Positives = 241/336 (71%), Gaps = 7/336 (2%) Query: 11 WHTFLDQQGSHINADAGALLPDNFVAPLNDLGLISLTGDDAASFLHNQITNDVEKLDLAS 70 WH F+ Q+ +D A D+F + L DLGLI+ GDDAA+FLHNQ+TNDVE L + Sbjct: 4 WHHFIAQENPL--SDTPATTSDSFFSALTDLGLIAFEGDDAANFLHNQLTNDVEHLGIDQ 61 Query: 71 VRLAGYCTPKGRLLATFLMWKDADQIVLQLPRTLQPAIQKRLQMFVLRAKAKLADISEQR 130 RLAGYCTPKGRLLA+FLMW+ D IVL++ R +QPAIQKRLQMFV+RAKAK +D+++ Sbjct: 62 ARLAGYCTPKGRLLASFLMWRTVDSIVLEVARDIQPAIQKRLQMFVMRAKAKSSDLTDSS 121 Query: 131 VALGLAGNTAAAALQQWFPQLPAQPYGKTDNEHGTLLRVADSRGAPRFQWITTEEQAIAA 190 +GL G+ A AAL WFP LP PY K +N GT++R+AD+ R+QWITT E AIAA Sbjct: 122 AIIGLGGDAAGAALASWFPLLPDAPYAKVENAAGTVIRLADAGTMVRYQWITTPEIAIAA 181 Query: 191 WPLLAQKLTVADAHAWRLSDIYAGVPTITQPTQEQFVPQMINFELIGGVNFKKGCYPGQE 250 WP L L A WRL++I A +P IT TQE+FVPQM+N E IGGVNF+KGCYPGQE Sbjct: 182 WPQLGTTLRQAGTEHWRLTEILAAIPHITLATQEKFVPQMVNLEAIGGVNFRKGCYPGQE 241 Query: 251 IVARSQYLGKLKRRSVLALVAAGQVAAGTEVFSSADPGQPCGMVVNAEPXKKKKKKKNSA 310 IVARSQYLGKLKRR++ A V+A +VAAG EVF++ +P QPCGM+VNA + Sbjct: 242 IVARSQYLGKLKRRTLPASVSAPEVAAGMEVFAANEPEQPCGMIVNA----ARDASGLHH 297 Query: 311 CLVEIKLAAAESGSIHLGSVDGPALQLQTLPYELTD 346 CLVEIK AA ++G+IHLG+ GPAL LPY L D Sbjct: 298 CLVEIKTAALDAGTIHLGA-QGPALHFTALPYALPD 332