BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0094.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775634.1| LysR family transcription regulator protein ... 513 e-143 ref|YP_004753978.1| LysR family transcriptional regulator [Colli... 454 e-126 ref|YP_004680281.1| LysR family transcriptional regulator [Cupri... 288 5e-76 ref|YP_728234.1| LysR family transcriptional regulator [Ralstoni... 288 6e-76 ref|YP_588007.1| LysR family transcriptional regulator [Cupriavi... 287 1e-75 >ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63726.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/297 (82%), Positives = 275/297 (92%) Query: 1 MQANISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVT 60 MQ NISTRLLQ FLAL DCRHFGHAA+RCHVSQSAFS MIQK+EAAAGA+LF RDTRNVT Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 61 LTAEGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQ 120 LT EGELFV+VARQL++DIEAAFS+MSDYVARRKG+V+IAALPSLAAGWLPPVLA YR + Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 121 YPGVTVELFDALSDHCLNYLRQGKADIALTAPGPNLMEFDTQPLCEDPFYLVCRRDHKLA 180 YPGVTVELFDA+SD CL+ LR GK DIALTAPGPNL+EFDT+PLC DPFYLVCR+DHKLA Sbjct: 121 YPGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLEFDTRPLCSDPFYLVCRKDHKLA 180 Query: 181 KKRVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGV 240 KR I+VPQLAGCE+IHLARSTSVRQHLDA+L+P GV++TGLEVEHLATVA LIESGLGV Sbjct: 181 SKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHTGLEVEHLATVAALIESGLGV 240 Query: 241 SLVPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRS 297 S+VPELTLFQFR PNLVAIPL+AP+L RPLLIV KERSLS+AAQGLLEL++ K+++ Sbjct: 241 SVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLSVAAQGLLELVEGKAKA 297 >ref|YP_004753978.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63155.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 305 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 218/294 (74%), Positives = 256/294 (87%) Query: 1 MQANISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVT 60 M+ NISTR L FLAL +C+HF HAAERC +SQSAFSVMIQKLE A GAKLF RDTRNVT Sbjct: 1 MKLNISTRSLHAFLALQECKHFTHAAERCFMSQSAFSVMIQKLEVAVGAKLFERDTRNVT 60 Query: 61 LTAEGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQ 120 LTAEGELF EVAR L++DIE+AF++MSDYVARRKG+V+IAALPSLAA LP V+A Y+ Sbjct: 61 LTAEGELFAEVARSLVSDIESAFADMSDYVARRKGRVAIAALPSLAANGLPAVIAEYKRA 120 Query: 121 YPGVTVELFDALSDHCLNYLRQGKADIALTAPGPNLMEFDTQPLCEDPFYLVCRRDHKLA 180 YPG+TV+LFDALSD CL LRQGK DIALTAPG L+EFDT+ LC DPFYLVCR+DH LA Sbjct: 121 YPGITVQLFDALSDQCLAMLRQGKVDIALTAPGSGLIEFDTKTLCSDPFYLVCRQDHALA 180 Query: 181 KKRVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGV 240 KR I++ L+GCELIHLARSTSVRQH++ LL+ + V+N+GLEVEHLATVAGLIESGLGV Sbjct: 181 GKRRIRISDLSGCELIHLARSTSVRQHVELLLRGIPVMNSGLEVEHLATVAGLIESGLGV 240 Query: 241 SLVPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEK 294 S+VPELTLFQFRH +LV+IP++A D+VRP+LIVK KERSLSIAAQG+ ELI+++ Sbjct: 241 SIVPELTLFQFRHMDLVSIPIDAHDIVRPILIVKKKERSLSIAAQGMSELIEKR 294 >ref|YP_004680281.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79049.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 301 Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 153/299 (51%), Positives = 203/299 (67%), Gaps = 3/299 (1%) Query: 4 NISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVTLTA 63 N+S + L+ F+AL R+F AA CH+SQSAFS ++Q LE AG++LF R TR+V L++ Sbjct: 2 NLSVKHLRAFVALATYRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSS 61 Query: 64 EGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQYPG 123 +G F + AR+L+ D E AF ++ + RRKG+VSIAALPSLAAG LPP+LA +RA YPG Sbjct: 62 DGVRFEQTARRLLADFETAFEDLRAHAERRKGRVSIAALPSLAAGDLPPLLAQFRALYPG 121 Query: 124 VTVELFDALSDHCLNYLRQGKADIALTAPGP-NLMEFDTQPLCEDPFYLVCRRDHKLAKK 182 + +ELFD L+D C+ +RQG+AD AL AP P + +PL D F+LVC DH LA+K Sbjct: 122 IALELFDQLADGCIELVRQGRADFAL-APAPAQDDDLRVEPLVRDTFHLVCPADHPLARK 180 Query: 183 RVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGVSL 242 R I LAG I L+R+TSVRQHLDA L P+ + + +EVEHLATVA L+++GLGVS Sbjct: 181 RRITPEMLAGLPFIQLSRTTSVRQHLDAALHPLRLTSV-MEVEHLATVAALVQAGLGVSA 239 Query: 243 VPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSGFAP 301 VP L LFQFR L PL P LVR + +V+ K+R S AA +++ +Q R G P Sbjct: 240 VPSLALFQFRREGLAIRPLQLPSLVRDICLVRLKDRGDSAAAAAMIDCLQAFYRGGKPP 298 >ref|YP_728234.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ94869.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 301 Score = 288 bits (738), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 153/299 (51%), Positives = 202/299 (67%), Gaps = 3/299 (1%) Query: 4 NISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVTLTA 63 N+S + L+ F+AL R+F AA CH+SQSAFS ++Q LE AG++LF R TR+V L++ Sbjct: 2 NLSVKHLRAFVALATYRNFTRAARACHLSQSAFSALVQTLEEQAGSRLFERTTRHVELSS 61 Query: 64 EGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQYPG 123 +G F + AR+L+ D E AF ++ + RRKG+VSIAALPSLA G LPP+LA +RA YPG Sbjct: 62 DGVRFEQTARRLLADFETAFEDLRAHAERRKGRVSIAALPSLAGGDLPPLLAQFRALYPG 121 Query: 124 VTVELFDALSDHCLNYLRQGKADIALTAPGPNLME-FDTQPLCEDPFYLVCRRDHKLAKK 182 + +ELFD L+D C+ +RQG+AD AL AP P E +PL D F+LVC DH LA+K Sbjct: 122 IALELFDQLADGCIELVRQGRADFAL-APAPAQDEDLRVEPLVRDTFHLVCPADHALARK 180 Query: 183 RVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLGVSL 242 R I LAG I L+R+TSVRQHLDA L P+ + + +EVEHLATVA L+++GLGVS Sbjct: 181 RRITPQMLAGLPFIQLSRTTSVRQHLDAALHPLRLTSV-MEVEHLATVAALVQAGLGVSA 239 Query: 243 VPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSGFAP 301 VP L LFQFR L PL P LVR + +V+ K+R S AA +++ +Q R G P Sbjct: 240 VPSLALFQFRREGLAIRPLQLPSLVRDICLVRLKDRGDSAAAAAMIDCLQAFYRGGKPP 298 >ref|YP_588007.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF12738.1| transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 299 Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 151/299 (50%), Positives = 205/299 (68%), Gaps = 3/299 (1%) Query: 1 MQANISTRLLQGFLALNDCRHFGHAAERCHVSQSAFSVMIQKLEAAAGAKLFVRDTRNVT 60 M +N+S + L+ F+AL R+F AA+ CH+SQSAFS +IQ LE AG +LF R TR+V Sbjct: 1 MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVD 60 Query: 61 LTAEGELFVEVARQLMTDIEAAFSNMSDYVARRKGKVSIAALPSLAAGWLPPVLAAYRAQ 120 L+ +G F E+AR+L+ D EAAF ++ D+ RRKG+V+IAALPSLA G LPP+LA++ Q Sbjct: 61 LSTDGRRFEEMARRLLGDFEAAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQ 120 Query: 121 YPGVTVELFDALSDHCLNYLRQGKADIALTAPGP-NLMEFDTQPLCEDPFYLVCRRDHKL 179 YPG+ +EL D L+D C+ ++R+G+AD AL AP P + + L D F+LVC DH L Sbjct: 121 YPGIALELHDQLADGCIEFVRRGQADFAL-APAPAQDADLRVEALVRDSFHLVCPADHPL 179 Query: 180 AKKRVIQVPQLAGCELIHLARSTSVRQHLDALLQPVGVVNTGLEVEHLATVAGLIESGLG 239 A KR + LAG I L+R++SVRQHLDA L P+ +N +EVEHLATVA L+E+GLG Sbjct: 180 AGKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLK-LNGVMEVEHLATVAALVEAGLG 238 Query: 240 VSLVPELTLFQFRHPNLVAIPLNAPDLVRPLLIVKAKERSLSIAAQGLLELIQEKSRSG 298 VS+VP L LFQFR L P+ P LVR + +V+ K+R S AA +L+ ++ RSG Sbjct: 239 VSVVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSG 297