BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0093.p (438 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775633.1| H+/citrate symporter protein [Herbaspirillum... 594 e-167 ref|YP_001893322.1| citrate/H+ symporter, CitMHS family [Ralston... 573 e-161 ref|YP_235749.1| citrate transporter [Pseudomonas syringae pv. s... 572 e-161 gb|EGH80244.1| citrate transporter [Pseudomonas syringae pv. apt... 571 e-160 ref|YP_773458.1| CitMHS family citrate/H+ symporter [Burkholderi... 571 e-160 >ref|YP_003775633.1| H+/citrate symporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ63725.1| H+/citrate symporter protein [Herbaspirillum seropedicae SmR1] Length = 433 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 299/438 (68%), Positives = 358/438 (81%), Gaps = 6/438 (1%) Query: 1 MLALLGFITIIVLLTAILTKKMSPLAALIAIPFAAALIGGFGLGVGKFMVDGIKSIAPIV 60 MLALLGF+TI+ L TAILTKKMSPL ALIAIP AAL+GGFGL KF+V G+ +IAP+ Sbjct: 1 MLALLGFVTIVSLFTAILTKKMSPLVALIAIPIVAALLGGFGLQTSKFIVQGVTAIAPVA 60 Query: 61 GMFVFAILFFGILKDAGMLDPIINKVLKVVGMRPSRIVLGSAVLAAVVHLDGSGAVTFLV 120 GMFVFAILFFGI+ DAGMLDPII+++LK VG RP+RIV G+A+LA ++HLDGSGAVTFL+ Sbjct: 61 GMFVFAILFFGIVTDAGMLDPIISRILKTVGSRPTRIVPGTALLALLIHLDGSGAVTFLI 120 Query: 121 TIPALLPLYERLQMDKRILACVVAMAAGVANALPWGGPTLRAAAALHIPVADLYLPLVPV 180 TIPA+LPLY RL +DKRILACV +MAAGV N LPW GP +RA+AALHIPV+D++ PL+PV Sbjct: 121 TIPAMLPLYTRLGIDKRILACVTSMAAGV-NFLPWTGPMIRASAALHIPVSDIFTPLIPV 179 Query: 181 QICGMLFVFTCAWLLGKKEERRLGLTSENAAIKYQGISHHQQELSEDQQELRRPGRFLIN 240 Q+ G+ FVF ++LLG KEERRLGL + A + + Q ELSE Q ++RRP F N Sbjct: 180 QLVGLTFVFIASYLLGLKEERRLGL-GKGATVDFV----QQHELSEAQLKIRRPQNFWAN 234 Query: 241 VALVLVVLGTMITGKVDPVVCFMIGTVLALFINYPDMAQQRARIDAHAKAALMMASILLA 300 + L + VLG MI+GKVDPVV FMIG VLAL INY D+ QR RIDAHAKAAL+MASIL A Sbjct: 235 IVLTIFVLGVMISGKVDPVVMFMIGVVLALMINYRDVTMQRERIDAHAKAALLMASILFA 294 Query: 301 AGVFTGIMKGTGMLTAMAKFVAGSIPVDMAHHLPAALAVISMPLSLLFDPDSFYFGVLPV 360 AGVFTGIM +GML+AMAK G +P +MA H+P L V+SMPLSLLFDPDSFYFGVLPV Sbjct: 295 AGVFTGIMTKSGMLSAMAKTAVGLVPPEMASHIPVVLGVLSMPLSLLFDPDSFYFGVLPV 354 Query: 361 LAEATSALGVPSVQMAQASLLGQMTTGFPVSPLTPATFLLIGLVGIELSDHQKFTIPFLF 420 +AE + LGVP++Q+AQA+LLGQMTTGFPVSPLTPATFL+ GL GIEL+DHQK+TIPFLF Sbjct: 355 IAEVSHMLGVPTIQVAQAALLGQMTTGFPVSPLTPATFLVCGLAGIELADHQKYTIPFLF 414 Query: 421 ATTIFMTIVAIMLGLFPL 438 ++ MTI ++LGLFPL Sbjct: 415 GASLVMTIACVVLGLFPL 432 >ref|YP_001893322.1| citrate/H+ symporter, CitMHS family [Ralstonia pickettii 12J] ref|YP_002983665.1| citrate/H+ symporter, CitMHS family [Ralstonia pickettii 12D] gb|ACD29895.1| citrate/H+ symporter, CitMHS family [Ralstonia pickettii 12J] gb|ACS64993.1| citrate/H+ symporter, CitMHS family [Ralstonia pickettii 12D] Length = 432 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 290/437 (66%), Positives = 355/437 (81%), Gaps = 6/437 (1%) Query: 1 MLALLGFITIIVLLTAILTKKMSPLAALIAIPFAAALIGGFGLGVGKFMVDGIKSIAPIV 60 MLALLG +TI+ L ILTK+MSPL ALIAIP AAL+GGFGL KF++ GIK +AP+ Sbjct: 1 MLALLGLLTIVALFVVILTKRMSPLVALIAIPVIAALVGGFGLNTSKFIIGGIKDVAPVA 60 Query: 61 GMFVFAILFFGILKDAGMLDPIINKVLKVVGMRPSRIVLGSAVLAAVVHLDGSGAVTFLV 120 GMF+FAIL+FGI+ DAGMLDPII+++L+ VG RP RIV+GSA+LA ++HLDGSGAV FL+ Sbjct: 61 GMFIFAILYFGIVTDAGMLDPIIDRILRTVGSRPPRIVVGSALLALLIHLDGSGAVAFLI 120 Query: 121 TIPALLPLYERLQMDKRILACVVAMAAGVANALPWGGPTLRAAAALHIPVADLYLPLVPV 180 TIPA+LPLY+RL MD+RILACV +MA GV N LPW GP +RA+A+LH+PV D++ PL+PV Sbjct: 121 TIPAMLPLYDRLGMDRRILACVTSMACGV-NFLPWTGPMIRASASLHMPVTDIFNPLIPV 179 Query: 181 QICGMLFVFTCAWLLGKKEERRLGLTSENAAIKYQGISHHQQELSEDQQELRRPGRFLIN 240 QI G++FVF CAWLLGK+EE+RLGLT+ G + LS+ +Q LRRP F IN Sbjct: 180 QIAGLVFVFACAWLLGKREEKRLGLTNHAG-----GAQVVARPLSDAEQALRRPRNFWIN 234 Query: 241 VALVLVVLGTMITGKVDPVVCFMIGTVLALFINYPDMAQQRARIDAHAKAALMMASILLA 300 + L +VV+G M++GKVDPVV FM+G V AL INYP++ QQR R+DAHAKAALMMASILLA Sbjct: 235 IILTVVVMGVMVSGKVDPVVMFMLGVVAALLINYPNVDQQRQRVDAHAKAALMMASILLA 294 Query: 301 AGVFTGIMKGTGMLTAMAKFVAGSIPVDMAHHLPAALAVISMPLSLLFDPDSFYFGVLPV 360 AGVFTGIM +GMLTAMAK IP MAHH+P L V+SMPLSLLFDPDSFYFGVLPV Sbjct: 295 AGVFTGIMSKSGMLTAMAKTAVDFIPSGMAHHIPVVLGVLSMPLSLLFDPDSFYFGVLPV 354 Query: 361 LAEATSALGVPSVQMAQASLLGQMTTGFPVSPLTPATFLLIGLVGIELSDHQKFTIPFLF 420 +AEA+ LGV V +AQA++LGQMTTGFPVSPLTPATFL++GL GIEL+DHQKF+IPFLF Sbjct: 355 VAEASKMLGVAPVHVAQAAVLGQMTTGFPVSPLTPATFLVVGLCGIELADHQKFSIPFLF 414 Query: 421 ATTIFMTIVAIMLGLFP 437 ++ MT VA++LG+ P Sbjct: 415 GASLLMTAVAVVLGVLP 431 >ref|YP_235749.1| citrate transporter [Pseudomonas syringae pv. syringae B728a] gb|AAY37711.1| Citrate transporter [Pseudomonas syringae pv. syringae B728a] Length = 430 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 289/436 (66%), Positives = 355/436 (81%), Gaps = 6/436 (1%) Query: 1 MLALLGFITIIVLLTAILTKKMSPLAALIAIPFAAALIGGFGLGVGKFMVDGIKSIAPIV 60 MLA LG ITI+ +L +I++K++SPL ALIA+P AAL+ GFGL F++ GIK++AP+V Sbjct: 1 MLATLGVITILAMLVSIMSKRISPLVALIALPIIAALLAGFGLQTSGFIITGIKNVAPVV 60 Query: 61 GMFVFAILFFGILKDAGMLDPIINKVLKVVGMRPSRIVLGSAVLAAVVHLDGSGAVTFLV 120 GMFVFAILFFGI+ DAGMLDPII+++LK VG RP+RIV+G+A+LA +VHLDGSGAVTFLV Sbjct: 61 GMFVFAILFFGIMTDAGMLDPIIDRILKRVGTRPTRIVMGTALLALLVHLDGSGAVTFLV 120 Query: 121 TIPALLPLYERLQMDKRILACVVAMAAGVANALPWGGPTLRAAAALHIPVADLYLPLVPV 180 TIPA+LPLY RL MDKRILACV AMAAGV N LPW GP LR++AALH+PV+DL+ PL+PV Sbjct: 121 TIPAMLPLYTRLGMDKRILACVTAMAAGV-NFLPWTGPVLRSSAALHVPVSDLFQPLIPV 179 Query: 181 QICGMLFVFTCAWLLGKKEERRLGLTSENAAIKYQGISHHQQELSEDQQELRRPGRFLIN 240 QI G++FVFTCA+ LG++EERRLGL +N +K HQ+ LS+ ++ELR+P F IN Sbjct: 180 QIVGLIFVFTCAFFLGRREERRLGLGPDNLDVK-----PHQRVLSDAERELRKPRLFWIN 234 Query: 241 VALVLVVLGTMITGKVDPVVCFMIGTVLALFINYPDMAQQRARIDAHAKAALMMASILLA 300 + L LVV+G MI G VDPVV FM+GTV+AL INYP + QRARIDAHAK AL MASILLA Sbjct: 235 LLLTLVVMGVMIAGVVDPVVMFMLGTVIALCINYPAVDTQRARIDAHAKTALTMASILLA 294 Query: 301 AGVFTGIMKGTGMLTAMAKFVAGSIPVDMAHHLPAALAVISMPLSLLFDPDSFYFGVLPV 360 AGVFTGIM+GTGML AMA+ G IP +P + ISMPLSLLFDPDSFYFG++PV Sbjct: 295 AGVFTGIMQGTGMLKAMAEVAVGQIPAGHGKLIPVVVGFISMPLSLLFDPDSFYFGIMPV 354 Query: 361 LAEATSALGVPSVQMAQASLLGQMTTGFPVSPLTPATFLLIGLVGIELSDHQKFTIPFLF 420 +AE ALGV +Q+AQASLLG TTGFPVSPLTPATFLL+GL IEL+DHQ+FTIPFLF Sbjct: 355 VAEVGKALGVDPMQVAQASLLGVHTTGFPVSPLTPATFLLVGLCKIELADHQRFTIPFLF 414 Query: 421 ATTIFMTIVAIMLGLF 436 A ++ MT+ A+++G+F Sbjct: 415 AASVIMTLTAMVIGVF 430 >gb|EGH80244.1| citrate transporter [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 430 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 288/436 (66%), Positives = 355/436 (81%), Gaps = 6/436 (1%) Query: 1 MLALLGFITIIVLLTAILTKKMSPLAALIAIPFAAALIGGFGLGVGKFMVDGIKSIAPIV 60 MLA LG ITI+ +L +I++K++SPL ALIA+P AAL+ GFGL F++ GIK++AP+V Sbjct: 1 MLATLGVITILAMLVSIMSKRISPLVALIALPIIAALLAGFGLQTSGFIITGIKNVAPVV 60 Query: 61 GMFVFAILFFGILKDAGMLDPIINKVLKVVGMRPSRIVLGSAVLAAVVHLDGSGAVTFLV 120 GMFVFAILFFGI+ DAGMLDPII+++LK VG RP+RIV+G+A+LA +VHLDGSGAVTFLV Sbjct: 61 GMFVFAILFFGIMTDAGMLDPIIDRILKRVGTRPTRIVMGTALLALLVHLDGSGAVTFLV 120 Query: 121 TIPALLPLYERLQMDKRILACVVAMAAGVANALPWGGPTLRAAAALHIPVADLYLPLVPV 180 TIPA+LPLY RL MDKRILACV AMAAGV N LPW GP LR++AALH+PV+DL+ PL+PV Sbjct: 121 TIPAMLPLYTRLGMDKRILACVTAMAAGV-NFLPWTGPVLRSSAALHVPVSDLFQPLIPV 179 Query: 181 QICGMLFVFTCAWLLGKKEERRLGLTSENAAIKYQGISHHQQELSEDQQELRRPGRFLIN 240 QI G++FVFTCA+ LG++EERRLGL +N +K HQ+ LS+ ++ELR+P F +N Sbjct: 180 QIVGLIFVFTCAFFLGRREERRLGLGPDNLDVK-----PHQRVLSDAERELRKPRLFWVN 234 Query: 241 VALVLVVLGTMITGKVDPVVCFMIGTVLALFINYPDMAQQRARIDAHAKAALMMASILLA 300 + L LVV+G MI G VDPVV FM+GTV+AL INYP + QRARIDAHAK AL MASILLA Sbjct: 235 LLLTLVVMGVMIAGVVDPVVMFMLGTVIALCINYPAVDAQRARIDAHAKTALTMASILLA 294 Query: 301 AGVFTGIMKGTGMLTAMAKFVAGSIPVDMAHHLPAALAVISMPLSLLFDPDSFYFGVLPV 360 AGVFTGIM+GTGML AMA+ G IP +P + ISMPLSLLFDPDSFYFG++PV Sbjct: 295 AGVFTGIMQGTGMLKAMAEVAVGQIPPGHGKLIPVVVGFISMPLSLLFDPDSFYFGIMPV 354 Query: 361 LAEATSALGVPSVQMAQASLLGQMTTGFPVSPLTPATFLLIGLVGIELSDHQKFTIPFLF 420 +AE ALGV +Q+AQASLLG TTGFPVSPLTPATFLL+GL IEL+DHQ+FTIPFLF Sbjct: 355 VAEVGKALGVDPMQVAQASLLGVHTTGFPVSPLTPATFLLVGLCKIELADHQRFTIPFLF 414 Query: 421 ATTIFMTIVAIMLGLF 436 A ++ MT+ A+++G+F Sbjct: 415 AASVIMTLTAMVIGVF 430 >ref|YP_773458.1| CitMHS family citrate/H+ symporter [Burkholderia ambifaria AMMD] gb|ABI87124.1| citrate/H+ symporter, CitMHS family [Burkholderia ambifaria AMMD] Length = 433 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 286/438 (65%), Positives = 355/438 (81%), Gaps = 5/438 (1%) Query: 1 MLALLGFITIIVLLTAILTKKMSPLAALIAIPFAAALIGGFGLGVGKFMVDGIKSIAPIV 60 MLA +G I I+ L I+TK++SPL ALI +P AA+L GFGL GKF+V G+++I PI Sbjct: 1 MLAWIGAIAIVALFGLIITKRLSPLVALIVVPVAASLAAGFGLSTGKFIVHGVQNIGPIA 60 Query: 61 GMFVFAILFFGILKDAGMLDPIINKVLKVVGMRPSRIVLGSAVLAAVVHLDGSGAVTFLV 120 GMFVFAILFFGIL DAGMLDPII VL+V+G P RIV+GSA+LA ++HLDGSGAVTFLV Sbjct: 61 GMFVFAILFFGILTDAGMLDPIIAGVLRVIGCHPPRIVMGSALLALLIHLDGSGAVTFLV 120 Query: 121 TIPALLPLYERLQMDKRILACVVAMAAGVANALPWGGPTLRAAAALHIPVADLYLPLVPV 180 T+PA++PLY RL MD+RILACV +MAAGV N LPW GP LRA+AALHIP + +++P++PV Sbjct: 121 TLPAMMPLYTRLGMDRRILACVASMAAGV-NFLPWVGPMLRASAALHIPGSAIFMPMIPV 179 Query: 181 QICGMLFVFTCAWLLGKKEERRLGLTSENAAIKYQGISHHQQELSEDQQELRRPGRFLIN 240 QI G++FVF A++LG +E +RLGL AA ++ +EL++ ++ LRRPGRF IN Sbjct: 180 QIVGLVFVFGTAYVLGAREAKRLGLDRAGAA----SLAIAPRELTDAERALRRPGRFRIN 235 Query: 241 VALVLVVLGTMITGKVDPVVCFMIGTVLALFINYPDMAQQRARIDAHAKAALMMASILLA 300 +AL LVVLGT+++G VDP+V FM+GTV AL INYPD+ QR RIDAHAKAALMMAS+LLA Sbjct: 236 LALTLVVLGTLVSGIVDPMVMFMLGTVAALVINYPDVQAQRERIDAHAKAALMMASVLLA 295 Query: 301 AGVFTGIMKGTGMLTAMAKFVAGSIPVDMAHHLPAALAVISMPLSLLFDPDSFYFGVLPV 360 AG FTGIM GTGML AMA+ V +PV+ A H+P L ++SMPLSLLFDPDSFYFGVLPV Sbjct: 296 AGAFTGIMSGTGMLKAMAEVVVAHVPVEHARHMPFVLGLLSMPLSLLFDPDSFYFGVLPV 355 Query: 361 LAEATSALGVPSVQMAQASLLGQMTTGFPVSPLTPATFLLIGLVGIELSDHQKFTIPFLF 420 LAE+ LGVP +QMAQA+LLGQMTTGFPVSPLTPATFL++GL G+EL++HQKFTIPFLF Sbjct: 356 LAESGKLLGVPPIQMAQAALLGQMTTGFPVSPLTPATFLIVGLTGVELAEHQKFTIPFLF 415 Query: 421 ATTIFMTIVAIMLGLFPL 438 A T+ M A+++G+FPL Sbjct: 416 AATVLMVFAAVIVGVFPL 433