BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0084.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752998.1| putative integral membrane sensor protein [C... 404 e-110 ref|YP_003775625.1| transmembrane protein [Herbaspirillum serope... 344 2e-92 ref|ZP_07675846.1| membrane protein [Ralstonia sp. 5_7_47FAA] >g... 342 1e-91 ref|YP_001898426.1| putative PAS/PAC sensor protein [Ralstonia p... 341 1e-91 ref|YP_582758.1| putative integral membrane sensor protein [Cupr... 334 2e-89 >ref|YP_004752998.1| putative integral membrane sensor protein [Collimonas fungivorans Ter331] gb|AEK62175.1| putative integral membrane sensor protein [Collimonas fungivorans Ter331] Length = 475 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 240/429 (55%), Positives = 298/429 (69%), Gaps = 4/429 (0%) Query: 3 SNNLAAPLLWAALYFVFGFVSHALNGSFVATGYIWLPAGITVSALLLTPTVRWFPLLVLL 62 +N LLW LY V G++SH LNG TGYIWLPAG+TV+A +LT T RW PL++ Sbjct: 45 TNQTVIALLWGLLYLVTGYMSHQLNGPIATTGYIWLPAGVTVAAFMLTRTARWLPLVIGF 104 Query: 63 FAAQILLGWLEHRELWRMALFCLDEIGVAAVAVWLVRRAPFPMEGLYFVRGLLMVGVGAS 122 AQ+LLG +E R L R+ALF LDEIG+AA+ V LVR+A PMEGLYFVRGLL+ V S Sbjct: 105 VLAQLLLGVIEERNLLRVALFALDEIGIAAIVVALVRKAQLPMEGLYFVRGLLIAAVACS 164 Query: 123 VVSGLFGAAWFAATQGTSFWPTLRVWALSDLVGILIMTPVLASWSQFRATRSGGIARTEF 182 VS GAAWF Q FWPT R+WA SDLVGILI+TPVLA WS+F A RSGG+ R++F Sbjct: 165 AVSAAIGAAWFTLVQHVPFWPTARIWAASDLVGILIVTPVLAGWSRFHAMRSGGMDRSDF 224 Query: 183 LLGLACFIAVIATGYLAFDSD-LDRIIFDIDFSTTYLPLFFIALVALLWGGRGGALSVAV 241 LLGLA F+A+ T ++ FD + + + ++F+ TY+PLFF A+V LLWGGRGG+L+VA+ Sbjct: 225 LLGLAAFLALGVTAFVIFDGNSISKFSAGVNFALTYIPLFFAAVVTLLWGGRGGSLAVAM 284 Query: 242 LSLMAFIYNSLGRGPFVELVRLNSSNALLELQIYLAVASLLSLLISALKTTREQLHEDVA 301 L+ A + G GPF + S ++LLE Q+YLAVA+LL LLISALKTTREQLHED A Sbjct: 285 LAFFALLNTVQGEGPFAAFSDIFSRHSLLEAQLYLAVAALLCLLISALKTTREQLHEDAA 344 Query: 302 RWKSNVELALTVSRQLVYSIDPGKKTIAWSGDVQSLLGLSPDKLATLDHALKLVHPLDQH 361 +WKS+VELAL VSRQLVYSIDP K + W+GD+Q LLG+S + LD L VHP D+ Sbjct: 345 QWKSDVELALAVSRQLVYSIDPHSKKLCWNGDLQGLLGVSNAAFSELDQVLAHVHPDDRQ 404 Query: 362 RLRQRWLEEESGGSDDAREDMPFRLLLADGKIIGAIDMSRSLRDPDGSLVMVAGTWHFDG 421 LR RWL++ DDAR D FRLLL G++ DMS L D D S+ MVAG W + Sbjct: 405 PLRSRWLDDS---DDDARPDFGFRLLLPAGEVSHVSDMSAVLLDADESVAMVAGAWRLNL 461 Query: 422 ADLAQGRSE 430 + AQ RS Sbjct: 462 KEDAQQRSS 470 >ref|YP_003775625.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63717.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 438 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 214/424 (50%), Positives = 274/424 (64%), Gaps = 9/424 (2%) Query: 1 VKSNNLAAPLLWAALYFVFGFVSHALNGSFVATGYIWLPAGITVSALLLTPTVRWFPLLV 60 V+SN LAAPL WAA YF+ G L+G+ A G++WLPAGITV+AL LTP RWF LLV Sbjct: 23 VQSNELAAPLAWAAAYFLAGLACLHLHGAIFAGGHVWLPAGITVAALWLTPLPRWFALLV 82 Query: 61 LLFAAQILLGWLEHRELWRMALFCLDEIGVAAVAVWLVRRAPFPMEGLYFVRGLLMVGVG 120 L+ AAQ+ LG LE RELWR+ L +E GVAAVAV L+ R P P+ GL FVR LL+V G Sbjct: 83 LIIAAQVGLGALEQRELWRVLLLAFNETGVAAVAVALLHRRPRPLSGLAFVRALLLVAGG 142 Query: 121 ASVVSGLFGAAWFAATQGTSFWPTLRVWALSDLVGILIMTPVLASWSQFRATRSGGIART 180 ASV S L GA W TQG F +LR+W S+LVGIL++TP L G+AR Sbjct: 143 ASVASALLGAGWQQVTQGLPFASSLRLWIFSELVGILLVTPALLLCVPGARAHPRGLARG 202 Query: 181 EFLLGLACFIAVIATGYLAFDSDLDRIIFDIDFSTTYLPLFFIALVALLWGGRGGALSVA 240 EFL+GLAC ++AT YL+F+SDLDR + D++F+T+YLPL +A++ L WG R GA + Sbjct: 203 EFLIGLACLAGMLATTYLSFNSDLDRRLLDVEFATSYLPLLLLAVLTLAWGARSGAWAAL 262 Query: 241 VLSLMAFIYNSLGRGPFVELVRLNSSNALLELQIYLAVASLLSLLISALKTTREQLHEDV 300 +L+L+A +Y++ G GPFV+LV+L++SNALLELQ+YL VA+LL+L + A KT R Q ++ Sbjct: 263 LLALLAMVYDARGGGPFVKLVQLHASNALLELQVYLGVAALLALFVGAFKTRRGQQLDEA 322 Query: 301 ARWKSNVELALTVSRQLVYSIDPGKKTIAWSGDVQSLLGLSPDKLATLDHALKLVHPLDQ 360 R + + LAL SRQ+ Y D + W GDV +LG+ TLD L LV PLDQ Sbjct: 323 ERSRRELHLALAASRQVAYVFDVQTRCFTWQGDVAGVLGVPTAAAQTLDQVLALVSPLDQ 382 Query: 361 HRLRQRWLEEESGGSDDAR-EDMPFRLLLADGKIIGAIDMSRSLRDPDGSLVMVAGTWHF 419 RLRQRWL+ G D AR MP R L DG + +D SR L + V G W Sbjct: 383 ARLRQRWLD----GEDPARVVQMPVR--LQDGSAV--LDRSRPLPRSRDAGPRVGGVWLI 434 Query: 420 DGAD 423 D AD Sbjct: 435 DPAD 438 >ref|ZP_07675846.1| membrane protein [Ralstonia sp. 5_7_47FAA] gb|EFP65833.1| membrane protein [Ralstonia sp. 5_7_47FAA] Length = 428 Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 205/425 (48%), Positives = 268/425 (63%), Gaps = 6/425 (1%) Query: 2 KSNNLAAPLLWAALYFVFGFVSHALNGSFVATGYIWLPAGITVSALLLTPTVRWFPLLVL 61 + + A LW ALY V VSH LNG TGYIWLPAG+ ++A +L P W L Sbjct: 5 RPSTTVATALWGALYLVAAIVSHRLNGPIDMTGYIWLPAGVAMAAFMLRPYREWPGLGAA 64 Query: 62 LFAAQILLGWLEHRELWRMALFCLDEIGVAAVAVWLVRRAPFPMEGLYFVRGLLMVGVGA 121 AQ++L +E LF LDE G AA+AV LVR A P+EGLYFVR +L+ G + Sbjct: 65 FAVAQLMLAAIERTNPAHAMLFVLDEAGSAALAVALVRLARVPLEGLYFVRAMLVAGAVS 124 Query: 122 SVVSGLFGAAWFAATQGTSFWPTLRVWALSDLVGILIMTPVLASWSQFRATRSGGIARTE 181 +++ LFGAAWFA +QG SF LR+WA SD +G+LI+TPVLA+WS+FRA RSGG RT+ Sbjct: 125 ALLGALFGAAWFAWSQGGSFGHVLRIWAASDFLGVLIVTPVLAAWSRFRAFRSGGTDRTD 184 Query: 182 FLLGLACFIAVIATGYLAFDSDLDRIIFD-IDFSTTYLPLFFIALVALLWGGRGGALSVA 240 FLLGLA +A+ + Y+ FD + D D I F+ TY+PLFF +VAL+WGGRGG+L+V Sbjct: 185 FLLGLAAVVALALSSYIIFDGNSDAKFGDGIGFALTYVPLFFAVVVALMWGGRGGSLAVL 244 Query: 241 VLSLMAFIYNSLGRGPFVELVRLNSSNALLELQIYLAVASLLSLLISALKTTREQLHEDV 300 +L+L+A + G GPF L + +LLE Q+YL +A+LL LL+SALKTTREQLHE Sbjct: 245 LLTLVALTQTAEGDGPFAVLDH-HYGQSLLETQLYLGIAALLVLLVSALKTTREQLHEQS 303 Query: 301 ARWKSNVELALTVSRQLVYSIDPGKKTIAWSGDVQSLLGLSPDKLATLDHALKLVHPLDQ 360 A+W++ VELAL S QLVY+IDP I W GDV + G P +A++ L+LVHP D+ Sbjct: 304 AQWQNRVELALAASGQLVYTIDPASGRIDWGGDVALMFGHEPASMASISTVLQLVHPDDR 363 Query: 361 HRLRQRWLEE---ESGGSDDAREDMPFRLLLADGKIIGAIDMSRSLRDPDGSLVMVAGTW 417 LR RWL E + AR R+ DG + +D R L D G+ +VAGTW Sbjct: 364 DALRARWLGAAVLEGDAATPARRQT-LRITARDGTLHTVVDTGRPLTDAVGNTALVAGTW 422 Query: 418 HFDGA 422 + A Sbjct: 423 SVETA 427 >ref|YP_001898426.1| putative PAS/PAC sensor protein [Ralstonia pickettii 12J] ref|YP_002980885.1| PAS/PAC sensor protein [Ralstonia pickettii 12D] gb|ACD25994.1| putative PAS/PAC sensor protein [Ralstonia pickettii 12J] gb|ACS62213.1| putative PAS/PAC sensor protein [Ralstonia pickettii 12D] Length = 428 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 205/425 (48%), Positives = 268/425 (63%), Gaps = 6/425 (1%) Query: 2 KSNNLAAPLLWAALYFVFGFVSHALNGSFVATGYIWLPAGITVSALLLTPTVRWFPLLVL 61 + + A LW ALY V VSH LNG TGYIWLPAG+ ++A +L P W L Sbjct: 5 RPSTTVATALWGALYLVAAIVSHRLNGPIDMTGYIWLPAGVAMAAFMLRPYREWPGLGAA 64 Query: 62 LFAAQILLGWLEHRELWRMALFCLDEIGVAAVAVWLVRRAPFPMEGLYFVRGLLMVGVGA 121 AQ++L +E LF LDE G AA+AV LVR A P+EGLYFVR +L+ G + Sbjct: 65 FAVAQLVLAAIERTNPAHAMLFVLDEAGSAALAVALVRLARVPLEGLYFVRAMLVAGAVS 124 Query: 122 SVVSGLFGAAWFAATQGTSFWPTLRVWALSDLVGILIMTPVLASWSQFRATRSGGIARTE 181 +++ LFGAAWFA +QG SF LR+WA SD +G+LI+TPVLA+WS+FRA RSGG RT+ Sbjct: 125 ALLGALFGAAWFAWSQGGSFGHVLRIWAASDFLGVLIVTPVLAAWSRFRAFRSGGTDRTD 184 Query: 182 FLLGLACFIAVIATGYLAFDSDLDRIIFD-IDFSTTYLPLFFIALVALLWGGRGGALSVA 240 FLLGLA +A+ + Y+ FD + D D I F+ TY+PLFF +VAL+WGGRGG+L+V Sbjct: 185 FLLGLAAVVALALSSYIIFDGNSDAKFGDGIGFALTYVPLFFAVVVALMWGGRGGSLAVL 244 Query: 241 VLSLMAFIYNSLGRGPFVELVRLNSSNALLELQIYLAVASLLSLLISALKTTREQLHEDV 300 +L+L+A + G GPF L + +LLE Q+YL +A+LL LL+SALKTTREQLHE Sbjct: 245 LLTLVALTQTAEGDGPFAVLDH-HYGQSLLETQLYLGIAALLVLLVSALKTTREQLHEQS 303 Query: 301 ARWKSNVELALTVSRQLVYSIDPGKKTIAWSGDVQSLLGLSPDKLATLDHALKLVHPLDQ 360 A+W++ VELAL S QLVY+IDP I W GDV + G P +A++ L+LVHP D+ Sbjct: 304 AQWQNRVELALAASGQLVYTIDPASGRIDWGGDVALMFGHEPASMASISTVLQLVHPDDR 363 Query: 361 HRLRQRWLEE---ESGGSDDAREDMPFRLLLADGKIIGAIDMSRSLRDPDGSLVMVAGTW 417 LR RWL E + AR R+ DG + +D R L D G+ +VAGTW Sbjct: 364 DALRARWLGAAVLEGDAATPARRQT-LRITARDGTLHTVVDTGRPLTDAVGNTALVAGTW 422 Query: 418 HFDGA 422 + A Sbjct: 423 SVETA 427 >ref|YP_582758.1| putative integral membrane sensor protein [Cupriavidus metallidurans CH34] gb|ABF07489.1| putative integral membrane sensor protein precursor [Cupriavidus metallidurans CH34] Length = 429 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 200/419 (47%), Positives = 268/419 (63%), Gaps = 5/419 (1%) Query: 11 LWAALYFVFGFVSHALNGSFVATGYIWLPAGITVSALLLTPTVRWFPLLVLLFAAQILLG 70 LWA LYFV G+ SH NG F A GYIWLPAG+TV+A +L P RW L + AQ+LLG Sbjct: 12 LWAILYFVLGYFSHKFNGPFTAAGYIWLPAGVTVAAFMLAPMRRWLGLGLAFLVAQMLLG 71 Query: 71 WLEHRELWRMALFCLDEIGVAAVAVWLVRRAPFPMEGLYFVRGLLMVGVGASVVSGLFGA 130 +E R+ +RM LF LDEIG AA+AV ++ F +EGL F+RGLL+ GV ASV + GA Sbjct: 72 MVEGRDAFRMLLFSLDEIGFAALAVAVIHLTKFSLEGLAFLRGLLLAGVIASVGGAVIGA 131 Query: 131 AWFAATQGTSFWPTLRVWALSDLVGILIMTPVLASWSQFRATRSGGIARTEFLLGLACFI 190 WF FW T +VWA +D VG+LI+TPV A W++FRA RSGG EF GLA Sbjct: 132 GWFWLFLDVPFWATAKVWAAADFVGVLIVTPVFAGWARFRAARSGGRQPGEFFFGLAALA 191 Query: 191 AVIATGYLAFD-SDLDRIIFDIDFSTTYLPLFFIALVALLWGGRGGALSVAVLSLMAFIY 249 V+AT L FD + + ++ + ++ TY+PLFF+A+VALL GGRGG+++VA+L+++ + Sbjct: 192 CVLATAALVFDGTRIAQLSLGVAYALTYIPLFFVAIVALLLGGRGGSVAVALLTVLVLVN 251 Query: 250 NSLGRGPFVELVRLNSSNALLELQIYLAVASLLSLLISALKTTREQLHEDVARWKSNVEL 309 + G GPF E L ++LL Q+YLAVA+LL+LLI+ L+T REQ + A +++VEL Sbjct: 252 TAQGDGPFAETA-LYHGDSLLIAQLYLAVAALLTLLINTLRTAREQTNAQAAARQNDVEL 310 Query: 310 ALTVSRQLVYSIDPGKKTIAWSGDVQSLLGLSPDKLATLDHALKLVHPLDQHRLRQRWLE 369 AL S QLVY +DP + WSG V+ LGL L+TLD L VHP D+ +R+RWL Sbjct: 311 ALAASGQLVYRLDPHSGRLRWSGSVERALGLHDSALSTLDDVLARVHPDDRAEVRRRWLR 370 Query: 370 EESGGSDDAREDMPFRLLLADGKIIGAIDMSRSLRDPDGSLVMVAGTWHFDGADLAQGR 428 E G + R D+ FRLLL G +DMS L D D S+ ++AG W + +GR Sbjct: 371 ECDG---ETRGDLTFRLLLPAGATTTIVDMSGPLLDGDDSVALIAGAWRVIASHDTEGR 426