BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0073.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_523476.1| hypothetical protein Rfer_2222 [Rhodoferax ferr... 99 2e-19 ref|YP_001684107.1| 2'-5' RNA ligase [Caulobacter sp. K31] >gi|1... 96 1e-18 ref|NP_420451.1| hypothetical protein CC_1641 [Caulobacter cresc... 93 2e-17 ref|YP_004155231.1| phosphoesterase hxtx [Variovorax paradoxus E... 92 2e-17 ref|YP_549259.1| 2',5' RNA ligase [Polaromonas sp. JS666] >gi|91... 87 8e-16 >ref|YP_523476.1| hypothetical protein Rfer_2222 [Rhodoferax ferrireducens T118] gb|ABD69945.1| conserved hypothetical protein [Rhodoferax ferrireducens T118] Length = 205 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/145 (42%), Positives = 81/145 (55%), Gaps = 4/145 (2%) Query: 14 HGVTGKRVGPERLHITLELVGHDSD--ERVVEAACRAADAVRFAAIDARFDAAMTFSAPS 71 HG+ GK + RLH+TL +G + +V A A DAV A D FD AM+F + S Sbjct: 61 HGLLGKPLLAHRLHVTLHDLGGYAQLPPDIVRTAREAGDAVAAPAFDVVFDHAMSFPS-S 119 Query: 72 GPFVLLGGKGLDGVRELRTALGCAMAEHGFTPQRSYEPHMTLGYDPRHRVERIAIDPIGF 131 G +VL G G + R +LG AM G +RS+ PHMT+ YD RH + AI+PI + Sbjct: 120 GTYVLCSGAGTAQLAAFRQSLGLAMDHAGLPVKRSFTPHMTVLYD-RHPIAEHAIEPIIW 178 Query: 132 RIAEFALVKSHIGLSRHEVLRVWPL 156 EF L+KSH+G HEVL W L Sbjct: 179 TAKEFVLIKSHVGQGVHEVLGRWSL 203 >ref|YP_001684107.1| 2'-5' RNA ligase [Caulobacter sp. K31] gb|ABZ71609.1| 2'-5' RNA ligase [Caulobacter sp. K31] Length = 189 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 6/155 (3%) Query: 7 AEKLLALHGVTGKRVGPERLHITLELVGHDSDER--VVEAACRAADAVRFAAIDARFDAA 64 A +L A H ++G+ + PER H+TL +G + R +V A AA+ + A D FD A Sbjct: 35 AAQLRAAHALSGRPLAPERFHVTLHHLGDHAGVRRDIVAMASEAAEMIATPAFDVTFDRA 94 Query: 65 MTF-SAPSGPFVLLGGKGLDGVRELRTALGCAMAEHGF--TPQRSYEPHMTLGYDPRHRV 121 +F + + P VL GG+GLD ++ + LG AMA G +S+ PH+T+ YDPR Sbjct: 95 ASFHNGGNNPHVLQGGEGLDALKAFQRDLGLAMARAGLGRLADKSFTPHVTMLYDPRLVA 154 Query: 122 ERIAIDPIGFRIAEFALVKSHIGLSRHEVLRVWPL 156 E+ A+ P+ +R+A F LV S +G + H L+ W L Sbjct: 155 EQ-AVAPVTWRVAGFTLVHSLLGRTEHVPLQRWAL 188 >ref|NP_420451.1| hypothetical protein CC_1641 [Caulobacter crescentus CB15] ref|YP_002517086.1| 2'-5' RNA ligase [Caulobacter crescentus NA1000] gb|AAK23619.1| hypothetical protein CC_1641 [Caulobacter crescentus CB15] gb|ACL95178.1| 2'-5' RNA ligase [Caulobacter crescentus NA1000] Length = 192 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 5/155 (3%) Query: 7 AEKLLALHGVTGKRVGPERLHITLELVGHDS--DERVVEAACRAADAVRFAAIDARFDAA 64 A +L G+ G + RLHITL +G + +V A DAV A + FD A Sbjct: 39 AARLKRASGLAGPLLQTGRLHITLHHLGDYAGLPNDIVSKGRFAGDAVEAGAFEVVFDRA 98 Query: 65 MTFSAPSG--PFVLLGGKGLDGVRELRTALGCAMAEHGFTPQRSYEPHMTLGYDPRHRVE 122 +F+ SG PF L GG+G+ + + ALG MA P RS+ PH+TL YD R + Sbjct: 99 ASFANRSGNNPFTLQGGEGIQPLIAFQKALGEKMAGAALRPDRSFTPHITLLYD-RQVMP 157 Query: 123 RIAIDPIGFRIAEFALVKSHIGLSRHEVLRVWPLG 157 AI PI + ++ FALV+S +G ++H VLR W LG Sbjct: 158 EQAITPISWTVSRFALVQSKLGRTQHIVLREWDLG 192 >ref|YP_004155231.1| phosphoesterase hxtx [Variovorax paradoxus EPS] gb|ADU37120.1| Phosphoesterase HXTX [Variovorax paradoxus EPS] Length = 201 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 4/155 (2%) Query: 3 LDAFAEKLLALHGVTGKRVGPERLHITL-ELVGHDSDE-RVVEAACRAADAVRFAAIDAR 60 L A +L H + G RLH+TL +L G+D+ + V+AA AA AV + D Sbjct: 48 LAALGAQLNDRHALKGTLSEAHRLHVTLHDLGGYDTVPCKKVQAALEAAAAVAPPSFDVV 107 Query: 61 FDAAMTFSAPSGPFVLLGGKGLDGVRELRTALGCAMAEHGFTPQRSYEPHMTLGYDPRHR 120 FD AMT+ A S FVL G +G + + R LG A+A+ G P RS+ PHMTL Y R + Sbjct: 108 FDHAMTY-ANSKAFVLCGEEGTAALADFRQRLGEALADAGLKPDRSFTPHMTLAYT-RRK 165 Query: 121 VERIAIDPIGFRIAEFALVKSHIGLSRHEVLRVWP 155 VE+ AI+P+ + FAL+ SH+G HEVL WP Sbjct: 166 VEKHAIEPVRWTAGSFALIDSHVGEGLHEVLGRWP 200 >ref|YP_549259.1| 2',5' RNA ligase [Polaromonas sp. JS666] gb|ABE44361.1| 2',5' RNA ligase [Polaromonas sp. JS666] Length = 196 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 68/167 (40%), Positives = 91/167 (54%), Gaps = 12/167 (7%) Query: 1 VRLDAFAEKLLALHGVTGKRVGPERLHITL----ELVGHDSDERVVEAACRAADAVR-FA 55 VR+ A A++L H + G+ + ER H+TL + VG D VV A +AA AV A Sbjct: 33 VRIAALAQQLRGEHELHGRPLARERFHVTLHHLGDYVGVPRD--VVAMADKAAMAVTTMA 90 Query: 56 AIDARFDAAMTFS-APSG-PFVLLGGKGLDGVRELRTALGCAMAEHGF--TPQRSYEPHM 111 + FD A +FS AP PFVL GG G+ + E + ALG AM + G + Y PH+ Sbjct: 91 PFEVAFDRAASFSSAPRNRPFVLRGGDGVAALMEFQQALGMAMKQAGLGRWAKPGYTPHV 150 Query: 112 TLGYDPRHRVERIAIDPIGFRIAEFALVKSHIGLSRHEVLRVWPLGG 158 TL YD R E+ A++ I + EF LV S +G +RH L WPL G Sbjct: 151 TLLYDDRCVAEQ-AVETINWTAREFVLVHSLLGKTRHVALARWPLHG 196